data_6L1X # _model_server_result.job_id l8LcBgzxv-fOyKZCoj7UNw _model_server_result.datetime_utc '2024-10-19 10:24:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6l1x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":801}' # _entry.id 6L1X # _exptl.entry_id 6L1X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6L1X _cell.length_a 96.12 _cell.length_b 116.68 _cell.length_c 123.55 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6L1X _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 76 A GLY 76 1_555 E CA CA . A CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc2 A OH TYR 78 A TYR 78 1_555 E CA CA . A CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc3 A NE2 HIS 172 A HIS 172 1_555 G ZN ZN . A ZN 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? metalc ? metalc4 A ND1 HIS 257 A HIS 257 1_555 F ZN ZN . A ZN 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc5 A NE2 HIS 335 A HIS 335 1_555 B FE HEM . A HEM 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.887 ? metalc ? metalc6 A OE1 GLU 411 A GLU 411 1_555 E CA CA . A CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc7 A OE2 GLU 411 A GLU 411 1_555 E CA CA . A CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.806 ? metalc ? metalc8 A ND1 HIS 490 A HIS 490 1_555 D FE FE . A FE 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.886 ? metalc ? metalc9 A OE1 GLU 494 A GLU 494 1_555 H ZN ZN . A ZN 807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc10 A OE2 GLU 494 A GLU 494 1_555 H ZN ZN . A ZN 807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc11 A OE1 GLU 498 A GLU 498 1_555 H ZN ZN . A ZN 807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc12 A OE2 GLU 498 A GLU 498 1_555 H ZN ZN . A ZN 807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc13 A NE2 HIS 541 A HIS 541 1_555 D FE FE . A FE 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.881 ? metalc ? metalc14 A NE2 HIS 542 A HIS 542 1_555 D FE FE . A FE 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.898 ? metalc ? metalc15 A OE1 GLU 563 A GLU 563 1_555 H ZN ZN . A ZN 807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc16 A OE2 GLU 563 A GLU 563 1_555 H ZN ZN . A ZN 807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc17 A OE1 GLU 573 A GLU 573 1_555 F ZN ZN . A ZN 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc18 A OE1 GLU 576 A GLU 576 1_555 F ZN ZN . A ZN 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc19 A NE2 HIS 577 A HIS 577 1_555 F ZN ZN . A ZN 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc20 A NE2 HIS 633 A HIS 633 1_555 C FE HEM . A HEM 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.879 ? metalc ? metalc21 A NE2 HIS 635 A HIS 635 1_555 B FE HEM . A HEM 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.873 ? metalc ? metalc22 A OE1 GLN 713 A GLN 713 1_555 G ZN ZN . A ZN 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc23 B O1D HEM . A HEM 801 1_555 E CA CA . A CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc24 C O1A HEM . A HEM 802 1_555 E CA CA . A CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc25 C FE HEM . A HEM 802 1_555 I O HOH . A HOH 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc26 D FE FE . A FE 803 1_555 I O HOH . A HOH 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 6L1X _atom_sites.fract_transf_matrix[1][1] 0.010404 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00857 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008094 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 801 773 HEM HEM . C 2 HEM A 1 802 774 HEM HEM . D 3 FE A 1 803 801 FE FE . E 4 CA A 1 804 778 CA CA . F 5 ZN A 1 805 901 ZN ZN . G 5 ZN A 1 806 902 ZN ZN . H 5 ZN A 1 807 903 ZN ZN . I 6 HOH A 1 901 904 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 18.694 31.82 -33.462 1 70.63 ? CHA HEM 801 A 1 HETATM 2 C CHB HEM . . . B 2 17.01 32.32 -37.97 1 70.7 ? CHB HEM 801 A 1 HETATM 3 C CHC HEM . . . B 2 17.772 27.563 -38.716 1 73.84 ? CHC HEM 801 A 1 HETATM 4 C CHD HEM . . . B 2 18.592 27.013 -33.979 1 64.98 ? CHD HEM 801 A 1 HETATM 5 C C1A HEM . . . B 2 18.099 32.325 -34.598 1 72.5 ? C1A HEM 801 A 1 HETATM 6 C C2A HEM . . . B 2 17.533 33.608 -34.694 1 75.68 ? C2A HEM 801 A 1 HETATM 7 C C3A HEM . . . B 2 17.062 33.751 -35.961 1 75.22 ? C3A HEM 801 A 1 HETATM 8 C C4A HEM . . . B 2 17.342 32.561 -36.656 1 71.05 ? C4A HEM 801 A 1 HETATM 9 C CMA HEM . . . B 2 16.368 34.968 -36.525 1 77.66 ? CMA HEM 801 A 1 HETATM 10 C CAA HEM . . . B 2 17.46 34.638 -33.594 1 77 ? CAA HEM 801 A 1 HETATM 11 C CBA HEM . . . B 2 18.58 35.675 -33.756 1 80.24 ? CBA HEM 801 A 1 HETATM 12 C CGA HEM . . . B 2 18.379 36.825 -32.797 1 81.88 ? CGA HEM 801 A 1 HETATM 13 O O1A HEM . . . B 2 18.14 36.585 -31.586 1 83.6 ? O1A HEM 801 A 1 HETATM 14 O O2A HEM . . . B 2 18.46 38.012 -33.211 1 80.12 ? O2A HEM 801 A 1 HETATM 15 C C1B HEM . . . B 2 17.125 31.057 -38.553 1 73.3 ? C1B HEM 801 A 1 HETATM 16 C C2B HEM . . . B 2 16.832 30.818 -39.927 1 77.01 ? C2B HEM 801 A 1 HETATM 17 C C3B HEM . . . B 2 17.039 29.487 -40.169 1 74.12 ? C3B HEM 801 A 1 HETATM 18 C C4B HEM . . . B 2 17.468 28.921 -38.87 1 74.03 ? C4B HEM 801 A 1 HETATM 19 C CMB HEM . . . B 2 16.372 31.858 -40.922 1 84.08 ? CMB HEM 801 A 1 HETATM 20 C CAB HEM . . . B 2 16.878 28.717 -41.427 1 71.32 ? CAB HEM 801 A 1 HETATM 21 C CBB HEM . . . B 2 16.762 29.283 -42.626 1 68.79 ? CBB HEM 801 A 1 HETATM 22 C C1C HEM . . . B 2 18.065 26.982 -37.487 1 71.94 ? C1C HEM 801 A 1 HETATM 23 C C2C HEM . . . B 2 18.369 25.625 -37.269 1 69.36 ? C2C HEM 801 A 1 HETATM 24 C C3C HEM . . . B 2 18.593 25.475 -35.917 1 71.26 ? C3C HEM 801 A 1 HETATM 25 C C4C HEM . . . B 2 18.431 26.757 -35.31 1 68.88 ? C4C HEM 801 A 1 HETATM 26 C CMC HEM . . . B 2 18.437 24.517 -38.287 1 66.35 ? CMC HEM 801 A 1 HETATM 27 C CAC HEM . . . B 2 18.951 24.208 -35.247 1 72.41 ? CAC HEM 801 A 1 HETATM 28 C CBC HEM . . . B 2 18.005 23.364 -34.864 1 75.48 ? CBC HEM 801 A 1 HETATM 29 C C1D HEM . . . B 2 18.742 28.305 -33.491 1 65.4 ? C1D HEM 801 A 1 HETATM 30 C C2D HEM . . . B 2 19.148 28.55 -32.101 1 63.71 ? C2D HEM 801 A 1 HETATM 31 C C3D HEM . . . B 2 19.174 29.885 -31.944 1 65.12 ? C3D HEM 801 A 1 HETATM 32 C C4D HEM . . . B 2 18.786 30.452 -33.245 1 69.07 ? C4D HEM 801 A 1 HETATM 33 C CMD HEM . . . B 2 19.459 27.502 -31.062 1 61.38 ? CMD HEM 801 A 1 HETATM 34 C CAD HEM . . . B 2 19.538 30.657 -30.698 1 65.6 ? CAD HEM 801 A 1 HETATM 35 C CBD HEM . . . B 2 20.91 31.268 -30.973 1 65.89 ? CBD HEM 801 A 1 HETATM 36 C CGD HEM . . . B 2 21.482 32.143 -29.888 1 65.22 ? CGD HEM 801 A 1 HETATM 37 O O1D HEM . . . B 2 20.811 32.569 -28.906 1 67.66 ? O1D HEM 801 A 1 HETATM 38 O O2D HEM . . . B 2 22.692 32.442 -30.012 1 64.38 ? O2D HEM 801 A 1 HETATM 39 N NA HEM . . . B 2 17.966 31.697 -35.81 1 69.22 ? NA HEM 801 A 1 HETATM 40 N NB HEM . . . B 2 17.496 29.919 -37.961 1 73.27 ? NB HEM 801 A 1 HETATM 41 N NC HEM . . . B 2 18.109 27.659 -36.289 1 71.51 ? NC HEM 801 A 1 HETATM 42 N ND HEM . . . B 2 18.541 29.47 -34.132 1 70.37 ? ND HEM 801 A 1 HETATM 43 FE FE HEM . . . B 2 18.02 29.727 -35.925 1 73.6 ? FE HEM 801 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #