data_6L1X # _model_server_result.job_id kr1yq7juD37oy4gMQkRipw _model_server_result.datetime_utc '2024-10-19 10:15:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6l1x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":802}' # _entry.id 6L1X # _exptl.entry_id 6L1X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6L1X _cell.length_a 96.12 _cell.length_b 116.68 _cell.length_c 123.55 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6L1X _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 76 A GLY 76 1_555 E CA CA . A CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc2 A OH TYR 78 A TYR 78 1_555 E CA CA . A CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc3 A NE2 HIS 172 A HIS 172 1_555 G ZN ZN . A ZN 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? metalc ? metalc4 A ND1 HIS 257 A HIS 257 1_555 F ZN ZN . A ZN 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc5 A NE2 HIS 335 A HIS 335 1_555 B FE HEM . A HEM 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.887 ? metalc ? metalc6 A OE1 GLU 411 A GLU 411 1_555 E CA CA . A CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc7 A OE2 GLU 411 A GLU 411 1_555 E CA CA . A CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.806 ? metalc ? metalc8 A ND1 HIS 490 A HIS 490 1_555 D FE FE . A FE 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.886 ? metalc ? metalc9 A OE1 GLU 494 A GLU 494 1_555 H ZN ZN . A ZN 807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc10 A OE2 GLU 494 A GLU 494 1_555 H ZN ZN . A ZN 807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc11 A OE1 GLU 498 A GLU 498 1_555 H ZN ZN . A ZN 807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc12 A OE2 GLU 498 A GLU 498 1_555 H ZN ZN . A ZN 807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc13 A NE2 HIS 541 A HIS 541 1_555 D FE FE . A FE 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.881 ? metalc ? metalc14 A NE2 HIS 542 A HIS 542 1_555 D FE FE . A FE 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.898 ? metalc ? metalc15 A OE1 GLU 563 A GLU 563 1_555 H ZN ZN . A ZN 807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc16 A OE2 GLU 563 A GLU 563 1_555 H ZN ZN . A ZN 807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc17 A OE1 GLU 573 A GLU 573 1_555 F ZN ZN . A ZN 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc18 A OE1 GLU 576 A GLU 576 1_555 F ZN ZN . A ZN 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc19 A NE2 HIS 577 A HIS 577 1_555 F ZN ZN . A ZN 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc20 A NE2 HIS 633 A HIS 633 1_555 C FE HEM . A HEM 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.879 ? metalc ? metalc21 A NE2 HIS 635 A HIS 635 1_555 B FE HEM . A HEM 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.873 ? metalc ? metalc22 A OE1 GLN 713 A GLN 713 1_555 G ZN ZN . A ZN 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc23 B O1D HEM . A HEM 801 1_555 E CA CA . A CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc24 C O1A HEM . A HEM 802 1_555 E CA CA . A CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc25 C FE HEM . A HEM 802 1_555 I O HOH . A HOH 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc26 D FE FE . A FE 803 1_555 I O HOH . A HOH 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 6L1X _atom_sites.fract_transf_matrix[1][1] 0.010404 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00857 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008094 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 801 773 HEM HEM . C 2 HEM A 1 802 774 HEM HEM . D 3 FE A 1 803 801 FE FE . E 4 CA A 1 804 778 CA CA . F 5 ZN A 1 805 901 ZN ZN . G 5 ZN A 1 806 902 ZN ZN . H 5 ZN A 1 807 903 ZN ZN . I 6 HOH A 1 901 904 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . C 2 27.095 28.804 -26.676 1 75.92 ? CHA HEM 802 A 1 HETATM 2 C CHB HEM . . . C 2 25.33 24.755 -28.627 1 86.16 ? CHB HEM 802 A 1 HETATM 3 C CHC HEM . . . C 2 29.758 22.718 -28.467 1 90.39 ? CHC HEM 802 A 1 HETATM 4 C CHD HEM . . . C 2 31.446 26.69 -26.3 1 81.71 ? CHD HEM 802 A 1 HETATM 5 C C1A HEM . . . C 2 26.261 27.888 -27.268 1 77.13 ? C1A HEM 802 A 1 HETATM 6 C C2A HEM . . . C 2 24.911 28.143 -27.639 1 76.22 ? C2A HEM 802 A 1 HETATM 7 C C3A HEM . . . C 2 24.43 26.993 -28.194 1 77.2 ? C3A HEM 802 A 1 HETATM 8 C C4A HEM . . . C 2 25.464 26.042 -28.158 1 83.28 ? C4A HEM 802 A 1 HETATM 9 C CMA HEM . . . C 2 23.058 26.72 -28.753 1 73.15 ? CMA HEM 802 A 1 HETATM 10 C CAA HEM . . . C 2 24.154 29.45 -27.466 1 73.87 ? CAA HEM 802 A 1 HETATM 11 C CBA HEM . . . C 2 23.398 29.499 -26.131 1 71.01 ? CBA HEM 802 A 1 HETATM 12 C CGA HEM . . . C 2 22.629 30.79 -25.892 1 72.08 ? CGA HEM 802 A 1 HETATM 13 O O1A HEM . . . C 2 22.013 31.408 -26.795 1 70.02 ? O1A HEM 802 A 1 HETATM 14 O O2A HEM . . . C 2 22.574 31.267 -24.741 1 74.86 ? O2A HEM 802 A 1 HETATM 15 C C1B HEM . . . C 2 26.418 23.888 -28.736 1 87.47 ? C1B HEM 802 A 1 HETATM 16 C C2B HEM . . . C 2 26.25 22.607 -29.313 1 91.6 ? C2B HEM 802 A 1 HETATM 17 C C3B HEM . . . C 2 27.468 21.998 -29.29 1 95.07 ? C3B HEM 802 A 1 HETATM 18 C C4B HEM . . . C 2 28.4 22.978 -28.664 1 91.68 ? C4B HEM 802 A 1 HETATM 19 C CMB HEM . . . C 2 24.955 22.035 -29.845 1 91.81 ? CMB HEM 802 A 1 HETATM 20 C CAB HEM . . . C 2 27.755 20.638 -29.799 1 99.46 ? CAB HEM 802 A 1 HETATM 21 C CBB HEM . . . C 2 28.934 20.041 -29.639 1 107.28 ? CBB HEM 802 A 1 HETATM 22 C C1C HEM . . . C 2 30.63 23.622 -27.884 1 85.43 ? C1C HEM 802 A 1 HETATM 23 C C2C HEM . . . C 2 32.018 23.432 -27.719 1 84.06 ? C2C HEM 802 A 1 HETATM 24 C C3C HEM . . . C 2 32.503 24.572 -27.1 1 85.13 ? C3C HEM 802 A 1 HETATM 25 C C4C HEM . . . C 2 31.388 25.451 -26.893 1 83.39 ? C4C HEM 802 A 1 HETATM 26 C CMC HEM . . . C 2 32.84 22.231 -28.133 1 79.84 ? CMC HEM 802 A 1 HETATM 27 C CAC HEM . . . C 2 33.916 24.802 -26.714 1 85.27 ? CAC HEM 802 A 1 HETATM 28 C CBC HEM . . . C 2 34.693 25.694 -27.318 1 84.09 ? CBC HEM 802 A 1 HETATM 29 C C1D HEM . . . C 2 30.371 27.579 -26.247 1 76.9 ? C1D HEM 802 A 1 HETATM 30 C C2D HEM . . . C 2 30.518 28.925 -25.674 1 74.08 ? C2D HEM 802 A 1 HETATM 31 C C3D HEM . . . C 2 29.323 29.534 -25.78 1 71.62 ? C3D HEM 802 A 1 HETATM 32 C C4D HEM . . . C 2 28.433 28.534 -26.411 1 74.38 ? C4D HEM 802 A 1 HETATM 33 C CMD HEM . . . C 2 31.778 29.514 -25.09 1 74.32 ? CMD HEM 802 A 1 HETATM 34 C CAD HEM . . . C 2 29.043 30.943 -25.286 1 67.73 ? CAD HEM 802 A 1 HETATM 35 C CBD HEM . . . C 2 28.082 31.786 -26.132 1 67.07 ? CBD HEM 802 A 1 HETATM 36 C CGD HEM . . . C 2 27.331 32.812 -25.291 1 72.01 ? CGD HEM 802 A 1 HETATM 37 O O1D HEM . . . C 2 26.99 33.906 -25.82 1 70.66 ? O1D HEM 802 A 1 HETATM 38 O O2D HEM . . . C 2 27.026 32.591 -24.081 1 73.09 ? O2D HEM 802 A 1 HETATM 39 N NA HEM . . . C 2 26.594 26.59 -27.591 1 81.98 ? NA HEM 802 A 1 HETATM 40 N NB HEM . . . C 2 27.696 24.085 -28.361 1 85.86 ? NB HEM 802 A 1 HETATM 41 N NC HEM . . . C 2 30.271 24.846 -27.383 1 80.13 ? NC HEM 802 A 1 HETATM 42 N ND HEM . . . C 2 29.117 27.396 -26.666 1 76.29 ? ND HEM 802 A 1 HETATM 43 FE FE HEM . . . C 2 28.449 25.845 -27.459 1 75.27 ? FE HEM 802 A 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #