data_6L1Z # _model_server_result.job_id '_Wleiud_5TmgK0i_6b7Wow' _model_server_result.datetime_utc '2024-11-24 21:24:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6l1z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 6L1Z # _exptl.entry_id 6L1Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 300.263 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (6aR)-3,4,6a,10-tetrakis(oxidanyl)-6,7-dihydroindeno[2,1-c]chromen-9-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6L1Z _cell.length_a 51.609 _cell.length_b 78.664 _cell.length_c 79.903 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6L1Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C16 H12 O6' _chem_comp.formula_weight 300.263 _chem_comp.id E3U _chem_comp.mon_nstd_flag . _chem_comp.name (6aR)-3,4,6a,10-tetrakis(oxidanyl)-6,7-dihydroindeno[2,1-c]chromen-9-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C12 C11 E3U sing 83 n n C12 C16 E3U doub 84 n n C12 C13 E3U sing 85 n n C11 C14 E3U sing 86 n n C11 C07 E3U doub 87 n n C10 C08 E3U sing 88 n n C10 O09 E3U sing 89 n n C16 C17 E3U sing 90 n n C15 C17 E3U sing 91 n n C15 C14 E3U doub 92 n n C15 O19 E3U sing 93 n n C17 O18 E3U doub 94 n n C13 C08 E3U sing 95 n n C01 C02 E3U sing 96 n y C01 C03 E3U doub 97 n y C01 C07 E3U sing 98 n n C02 C04 E3U doub 99 n y C03 C05 E3U sing 100 n y C03 O09 E3U sing 101 n n C04 C06 E3U sing 102 n y C05 C06 E3U doub 103 n y C05 O21 E3U sing 104 n n C06 O22 E3U sing 105 n n C07 C08 E3U sing 106 n n C08 O20 E3U sing 107 n n C10 H1 E3U sing 108 n n C10 H2 E3U sing 109 n n C16 H3 E3U sing 110 n n C14 H5 E3U sing 111 n n C13 H6 E3U sing 112 n n C13 H7 E3U sing 113 n n C02 H8 E3U sing 114 n n C04 H9 E3U sing 115 n n O19 H11 E3U sing 116 n n O20 H12 E3U sing 117 n n O21 H13 E3U sing 118 n n O22 H14 E3U sing 119 n n # _atom_sites.entry_id 6L1Z _atom_sites.fract_transf_matrix[1][1] 0.019376 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012712 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012515 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 E3U A 1 401 1 E3U HMT . C 3 HOH A 1 501 109 HOH HOH . C 3 HOH A 2 502 107 HOH HOH . C 3 HOH A 3 503 120 HOH HOH . C 3 HOH A 4 504 70 HOH HOH . C 3 HOH A 5 505 123 HOH HOH . C 3 HOH A 6 506 81 HOH HOH . C 3 HOH A 7 507 25 HOH HOH . C 3 HOH A 8 508 32 HOH HOH . C 3 HOH A 9 509 134 HOH HOH . C 3 HOH A 10 510 46 HOH HOH . C 3 HOH A 11 511 89 HOH HOH . C 3 HOH A 12 512 44 HOH HOH . C 3 HOH A 13 513 27 HOH HOH . C 3 HOH A 14 514 33 HOH HOH . C 3 HOH A 15 515 22 HOH HOH . C 3 HOH A 16 516 155 HOH HOH . C 3 HOH A 17 517 64 HOH HOH . C 3 HOH A 18 518 78 HOH HOH . C 3 HOH A 19 519 30 HOH HOH . C 3 HOH A 20 520 13 HOH HOH . C 3 HOH A 21 521 10 HOH HOH . C 3 HOH A 22 522 26 HOH HOH . C 3 HOH A 23 523 41 HOH HOH . C 3 HOH A 24 524 105 HOH HOH . C 3 HOH A 25 525 31 HOH HOH . C 3 HOH A 26 526 114 HOH HOH . C 3 HOH A 27 527 43 HOH HOH . C 3 HOH A 28 528 34 HOH HOH . C 3 HOH A 29 529 39 HOH HOH . C 3 HOH A 30 530 56 HOH HOH . C 3 HOH A 31 531 16 HOH HOH . C 3 HOH A 32 532 77 HOH HOH . C 3 HOH A 33 533 102 HOH HOH . C 3 HOH A 34 534 55 HOH HOH . C 3 HOH A 35 535 2 HOH HOH . C 3 HOH A 36 536 17 HOH HOH . C 3 HOH A 37 537 6 HOH HOH . C 3 HOH A 38 538 14 HOH HOH . C 3 HOH A 39 539 18 HOH HOH . C 3 HOH A 40 540 37 HOH HOH . C 3 HOH A 41 541 57 HOH HOH . C 3 HOH A 42 542 23 HOH HOH . C 3 HOH A 43 543 21 HOH HOH . C 3 HOH A 44 544 85 HOH HOH . C 3 HOH A 45 545 135 HOH HOH . C 3 HOH A 46 546 118 HOH HOH . C 3 HOH A 47 547 104 HOH HOH . C 3 HOH A 48 548 68 HOH HOH . C 3 HOH A 49 549 92 HOH HOH . C 3 HOH A 50 550 47 HOH HOH . C 3 HOH A 51 551 9 HOH HOH . C 3 HOH A 52 552 79 HOH HOH . C 3 HOH A 53 553 83 HOH HOH . C 3 HOH A 54 554 63 HOH HOH . C 3 HOH A 55 555 49 HOH HOH . C 3 HOH A 56 556 50 HOH HOH . C 3 HOH A 57 557 66 HOH HOH . C 3 HOH A 58 558 67 HOH HOH . C 3 HOH A 59 559 58 HOH HOH . C 3 HOH A 60 560 53 HOH HOH . C 3 HOH A 61 561 3 HOH HOH . C 3 HOH A 62 562 19 HOH HOH . C 3 HOH A 63 563 62 HOH HOH . C 3 HOH A 64 564 138 HOH HOH . C 3 HOH A 65 565 76 HOH HOH . C 3 HOH A 66 566 8 HOH HOH . C 3 HOH A 67 567 103 HOH HOH . C 3 HOH A 68 568 60 HOH HOH . C 3 HOH A 69 569 88 HOH HOH . C 3 HOH A 70 570 20 HOH HOH . C 3 HOH A 71 571 90 HOH HOH . C 3 HOH A 72 572 5 HOH HOH . C 3 HOH A 73 573 146 HOH HOH . C 3 HOH A 74 574 71 HOH HOH . C 3 HOH A 75 575 158 HOH HOH . C 3 HOH A 76 576 111 HOH HOH . C 3 HOH A 77 577 12 HOH HOH . C 3 HOH A 78 578 38 HOH HOH . C 3 HOH A 79 579 29 HOH HOH . C 3 HOH A 80 580 51 HOH HOH . C 3 HOH A 81 581 80 HOH HOH . C 3 HOH A 82 582 4 HOH HOH . C 3 HOH A 83 583 94 HOH HOH . C 3 HOH A 84 584 7 HOH HOH . C 3 HOH A 85 585 73 HOH HOH . C 3 HOH A 86 586 59 HOH HOH . C 3 HOH A 87 587 140 HOH HOH . C 3 HOH A 88 588 132 HOH HOH . C 3 HOH A 89 589 129 HOH HOH . C 3 HOH A 90 590 115 HOH HOH . C 3 HOH A 91 591 125 HOH HOH . C 3 HOH A 92 592 91 HOH HOH . C 3 HOH A 93 593 117 HOH HOH . C 3 HOH A 94 594 61 HOH HOH . C 3 HOH A 95 595 124 HOH HOH . C 3 HOH A 96 596 141 HOH HOH . C 3 HOH A 97 597 82 HOH HOH . C 3 HOH A 98 598 52 HOH HOH . C 3 HOH A 99 599 147 HOH HOH . C 3 HOH A 100 600 154 HOH HOH . C 3 HOH A 101 601 87 HOH HOH . C 3 HOH A 102 602 35 HOH HOH . C 3 HOH A 103 603 45 HOH HOH . C 3 HOH A 104 604 101 HOH HOH . C 3 HOH A 105 605 133 HOH HOH . C 3 HOH A 106 606 36 HOH HOH . C 3 HOH A 107 607 1 HOH HOH . C 3 HOH A 108 608 113 HOH HOH . C 3 HOH A 109 609 40 HOH HOH . C 3 HOH A 110 610 24 HOH HOH . C 3 HOH A 111 611 74 HOH HOH . C 3 HOH A 112 612 136 HOH HOH . C 3 HOH A 113 613 84 HOH HOH . C 3 HOH A 114 614 86 HOH HOH . C 3 HOH A 115 615 116 HOH HOH . C 3 HOH A 116 616 65 HOH HOH . C 3 HOH A 117 617 126 HOH HOH . C 3 HOH A 118 618 156 HOH HOH . C 3 HOH A 119 619 69 HOH HOH . C 3 HOH A 120 620 42 HOH HOH . C 3 HOH A 121 621 72 HOH HOH . C 3 HOH A 122 622 28 HOH HOH . C 3 HOH A 123 623 15 HOH HOH . C 3 HOH A 124 624 139 HOH HOH . C 3 HOH A 125 625 54 HOH HOH . C 3 HOH A 126 626 152 HOH HOH . C 3 HOH A 127 627 48 HOH HOH . C 3 HOH A 128 628 75 HOH HOH . C 3 HOH A 129 629 157 HOH HOH . C 3 HOH A 130 630 108 HOH HOH . C 3 HOH A 131 631 100 HOH HOH . C 3 HOH A 132 632 122 HOH HOH . C 3 HOH A 133 633 121 HOH HOH . C 3 HOH A 134 634 11 HOH HOH . C 3 HOH A 135 635 98 HOH HOH . C 3 HOH A 136 636 110 HOH HOH . C 3 HOH A 137 637 127 HOH HOH . C 3 HOH A 138 638 149 HOH HOH . C 3 HOH A 139 639 95 HOH HOH . C 3 HOH A 140 640 97 HOH HOH . C 3 HOH A 141 641 150 HOH HOH . C 3 HOH A 142 642 128 HOH HOH . C 3 HOH A 143 643 148 HOH HOH . C 3 HOH A 144 644 93 HOH HOH . C 3 HOH A 145 645 153 HOH HOH . C 3 HOH A 146 646 96 HOH HOH . C 3 HOH A 147 647 144 HOH HOH . C 3 HOH A 148 648 131 HOH HOH . C 3 HOH A 149 649 142 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C12 E3U . . . B 2 -0.097 -8.245 -24.747 1 33.54 ? C12 E3U 401 A 1 HETATM 2 C C11 E3U . . . B 2 -0.228 -9.159 -23.831 1 27.07 ? C11 E3U 401 A 1 HETATM 3 C C10 E3U . . . B 2 -1.218 -10.802 -27.171 1 38.26 ? C10 E3U 401 A 1 HETATM 4 C C16 E3U . . . B 2 0.271 -6.906 -24.364 1 23.41 ? C16 E3U 401 A 1 HETATM 5 C C15 E3U . . . B 2 0.335 -7.571 -22.094 1 27.1 ? C15 E3U 401 A 1 HETATM 6 C C17 E3U . . . B 2 0.476 -6.608 -23.046 1 36.36 ? C17 E3U 401 A 1 HETATM 7 C C14 E3U . . . B 2 -0.017 -8.856 -22.456 1 34.8 ? C14 E3U 401 A 1 HETATM 8 C C13 E3U . . . B 2 -0.317 -8.584 -26.116 1 30.25 ? C13 E3U 401 A 1 HETATM 9 C C01 E3U . . . B 2 -0.926 -11.77 -24.406 1 35.45 ? C01 E3U 401 A 1 HETATM 10 C C02 E3U . . . B 2 -0.914 -12.245 -23.088 1 43.85 ? C02 E3U 401 A 1 HETATM 11 C C03 E3U . . . B 2 -1.26 -12.652 -25.525 1 39.01 ? C03 E3U 401 A 1 HETATM 12 C C04 E3U . . . B 2 -1.222 -13.602 -22.841 1 40.4 ? C04 E3U 401 A 1 HETATM 13 C C05 E3U . . . B 2 -1.562 -13.993 -25.27 1 37.96 ? C05 E3U 401 A 1 HETATM 14 C C06 E3U . . . B 2 -1.549 -14.482 -23.94 1 41.28 ? C06 E3U 401 A 1 HETATM 15 C C07 E3U . . . B 2 -0.634 -10.413 -24.739 1 28.21 ? C07 E3U 401 A 1 HETATM 16 C C08 E3U . . . B 2 -0.233 -10.049 -26.156 1 36.45 ? C08 E3U 401 A 1 HETATM 17 O O09 E3U . . . B 2 -1.276 -12.136 -26.979 1 46.38 ? O09 E3U 401 A 1 HETATM 18 O O18 E3U . . . B 2 0.786 -5.478 -22.721 1 45.37 ? O18 E3U 401 A 1 HETATM 19 O O19 E3U . . . B 2 0.549 -7.255 -20.739 1 41.64 ? O19 E3U 401 A 1 HETATM 20 O O20 E3U . . . B 2 0.821 -9.596 -27.035 1 48.66 ? O20 E3U 401 A 1 HETATM 21 O O21 E3U . . . B 2 -1.881 -14.857 -26.334 1 44.82 ? O21 E3U 401 A 1 HETATM 22 O O22 E3U . . . B 2 -1.855 -15.833 -23.687 1 52.52 ? O22 E3U 401 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 452 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 22 #