data_6L23
#
_model_server_result.job_id            2DVGfjR7YeLUsltmrnuMgg 
_model_server_result.datetime_utc      '2024-10-26 02:32:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6l23 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":410}' 
#
_entry.id    6L23 
#
_exptl.entry_id    6L23 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              300.263 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (6aR)-3,4,6a,10-tetrakis(oxidanyl)-6,7-dihydroindeno[2,1-c]chromen-9-one 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6L23 
_cell.length_a            51.861 
_cell.length_b            79.021 
_cell.length_c            79.775 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6L23 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    'P 2ac 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             K 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C16 H12 O6' 
_chem_comp.formula_weight    300.263 
_chem_comp.id                E3U 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (6aR)-3,4,6a,10-tetrakis(oxidanyl)-6,7-dihydroindeno[2,1-c]chromen-9-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C12 C11 E3U sing 83 n n 
C12 C16 E3U doub 84 n n 
C12 C13 E3U sing 85 n n 
C11 C14 E3U sing 86 n n 
C11 C07 E3U doub 87 n n 
C10 C08 E3U sing 88 n n 
C10 O09 E3U sing 89 n n 
C16 C17 E3U sing 90 n n 
C15 C17 E3U sing 91 n n 
C15 C14 E3U doub 92 n n 
C15 O19 E3U sing 93 n n 
C17 O18 E3U doub 94 n n 
C13 C08 E3U sing 95 n n 
C01 C02 E3U sing 96 n y 
C01 C03 E3U doub 97 n y 
C01 C07 E3U sing 98 n n 
C02 C04 E3U doub 99 n y 
C03 C05 E3U sing 100 n y 
C03 O09 E3U sing 101 n n 
C04 C06 E3U sing 102 n y 
C05 C06 E3U doub 103 n y 
C05 O21 E3U sing 104 n n 
C06 O22 E3U sing 105 n n 
C07 C08 E3U sing 106 n n 
C08 O20 E3U sing 107 n n 
C10 H1 E3U sing 108 n n 
C10 H2 E3U sing 109 n n 
C16 H3 E3U sing 110 n n 
C14 H5 E3U sing 111 n n 
C13 H6 E3U sing 112 n n 
C13 H7 E3U sing 113 n n 
C02 H8 E3U sing 114 n n 
C04 H9 E3U sing 115 n n 
O19 H11 E3U sing 116 n n 
O20 H12 E3U sing 117 n n 
O21 H13 E3U sing 118 n n 
O22 H14 E3U sing 119 n n 
#
_atom_sites.entry_id                     6L23 
_atom_sites.fract_transf_matrix[1][1]    0.019282 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012655 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012535 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 EDO A 1 401 402 EDO EDO . 
C 2 EDO A 1 402 403 EDO EDO . 
D 2 EDO A 1 403 405 EDO EDO . 
E 2 EDO A 1 404 406 EDO EDO . 
F 2 EDO A 1 405 407 EDO EDO . 
G 2 EDO A 1 406 409 EDO EDO . 
H 2 EDO A 1 407 416 EDO EDO . 
I 2 EDO A 1 408 1 EDO EDO . 
J 2 EDO A 1 409 3 EDO EDO . 
K 3 E3U A 1 410 1 E3U HMT . 
L 4 HOH A 1 501 50 HOH HOH . 
L 4 HOH A 2 502 32 HOH HOH . 
L 4 HOH A 3 503 22 HOH HOH . 
L 4 HOH A 4 504 40 HOH HOH . 
L 4 HOH A 5 505 91 HOH HOH . 
L 4 HOH A 6 506 67 HOH HOH . 
L 4 HOH A 7 507 86 HOH HOH . 
L 4 HOH A 8 508 113 HOH HOH . 
L 4 HOH A 9 509 84 HOH HOH . 
L 4 HOH A 10 510 48 HOH HOH . 
L 4 HOH A 11 511 31 HOH HOH . 
L 4 HOH A 12 512 4 HOH HOH . 
L 4 HOH A 13 513 15 HOH HOH . 
L 4 HOH A 14 514 18 HOH HOH . 
L 4 HOH A 15 515 6 HOH HOH . 
L 4 HOH A 16 516 12 HOH HOH . 
L 4 HOH A 17 517 29 HOH HOH . 
L 4 HOH A 18 518 87 HOH HOH . 
L 4 HOH A 19 519 102 HOH HOH . 
L 4 HOH A 20 520 21 HOH HOH . 
L 4 HOH A 21 521 61 HOH HOH . 
L 4 HOH A 22 522 35 HOH HOH . 
L 4 HOH A 23 523 94 HOH HOH . 
L 4 HOH A 24 524 105 HOH HOH . 
L 4 HOH A 25 525 62 HOH HOH . 
L 4 HOH A 26 526 65 HOH HOH . 
L 4 HOH A 27 527 57 HOH HOH . 
L 4 HOH A 28 528 115 HOH HOH . 
L 4 HOH A 29 529 30 HOH HOH . 
L 4 HOH A 30 530 46 HOH HOH . 
L 4 HOH A 31 531 54 HOH HOH . 
L 4 HOH A 32 532 16 HOH HOH . 
L 4 HOH A 33 533 27 HOH HOH . 
L 4 HOH A 34 534 79 HOH HOH . 
L 4 HOH A 35 535 26 HOH HOH . 
L 4 HOH A 36 536 77 HOH HOH . 
L 4 HOH A 37 537 47 HOH HOH . 
L 4 HOH A 38 538 41 HOH HOH . 
L 4 HOH A 39 539 92 HOH HOH . 
L 4 HOH A 40 540 119 HOH HOH . 
L 4 HOH A 41 541 99 HOH HOH . 
L 4 HOH A 42 542 55 HOH HOH . 
L 4 HOH A 43 543 122 HOH HOH . 
L 4 HOH A 44 544 111 HOH HOH . 
L 4 HOH A 45 545 33 HOH HOH . 
L 4 HOH A 46 546 75 HOH HOH . 
L 4 HOH A 47 547 121 HOH HOH . 
L 4 HOH A 48 548 110 HOH HOH . 
L 4 HOH A 49 549 90 HOH HOH . 
L 4 HOH A 50 550 8 HOH HOH . 
L 4 HOH A 51 551 36 HOH HOH . 
L 4 HOH A 52 552 66 HOH HOH . 
L 4 HOH A 53 553 85 HOH HOH . 
L 4 HOH A 54 554 14 HOH HOH . 
L 4 HOH A 55 555 3 HOH HOH . 
L 4 HOH A 56 556 108 HOH HOH . 
L 4 HOH A 57 557 59 HOH HOH . 
L 4 HOH A 58 558 24 HOH HOH . 
L 4 HOH A 59 559 103 HOH HOH . 
L 4 HOH A 60 560 116 HOH HOH . 
L 4 HOH A 61 561 7 HOH HOH . 
L 4 HOH A 62 562 114 HOH HOH . 
L 4 HOH A 63 563 5 HOH HOH . 
L 4 HOH A 64 564 2 HOH HOH . 
L 4 HOH A 65 565 120 HOH HOH . 
L 4 HOH A 66 566 11 HOH HOH . 
L 4 HOH A 67 567 58 HOH HOH . 
L 4 HOH A 68 568 44 HOH HOH . 
L 4 HOH A 69 569 28 HOH HOH . 
L 4 HOH A 70 570 19 HOH HOH . 
L 4 HOH A 71 571 82 HOH HOH . 
L 4 HOH A 72 572 17 HOH HOH . 
L 4 HOH A 73 573 112 HOH HOH . 
L 4 HOH A 74 574 93 HOH HOH . 
L 4 HOH A 75 575 74 HOH HOH . 
L 4 HOH A 76 576 95 HOH HOH . 
L 4 HOH A 77 577 25 HOH HOH . 
L 4 HOH A 78 578 34 HOH HOH . 
L 4 HOH A 79 579 9 HOH HOH . 
L 4 HOH A 80 580 78 HOH HOH . 
L 4 HOH A 81 581 73 HOH HOH . 
L 4 HOH A 82 582 70 HOH HOH . 
L 4 HOH A 83 583 60 HOH HOH . 
L 4 HOH A 84 584 106 HOH HOH . 
L 4 HOH A 85 585 80 HOH HOH . 
L 4 HOH A 86 586 88 HOH HOH . 
L 4 HOH A 87 587 1 HOH HOH . 
L 4 HOH A 88 588 39 HOH HOH . 
L 4 HOH A 89 589 100 HOH HOH . 
L 4 HOH A 90 590 45 HOH HOH . 
L 4 HOH A 91 591 52 HOH HOH . 
L 4 HOH A 92 592 56 HOH HOH . 
L 4 HOH A 93 593 10 HOH HOH . 
L 4 HOH A 94 594 107 HOH HOH . 
L 4 HOH A 95 595 81 HOH HOH . 
L 4 HOH A 96 596 53 HOH HOH . 
L 4 HOH A 97 597 69 HOH HOH . 
L 4 HOH A 98 598 38 HOH HOH . 
L 4 HOH A 99 599 42 HOH HOH . 
L 4 HOH A 100 600 97 HOH HOH . 
L 4 HOH A 101 601 117 HOH HOH . 
L 4 HOH A 102 602 23 HOH HOH . 
L 4 HOH A 103 603 71 HOH HOH . 
L 4 HOH A 104 604 13 HOH HOH . 
L 4 HOH A 105 605 64 HOH HOH . 
L 4 HOH A 106 606 49 HOH HOH . 
L 4 HOH A 107 607 118 HOH HOH . 
L 4 HOH A 108 608 72 HOH HOH . 
L 4 HOH A 109 609 83 HOH HOH . 
L 4 HOH A 110 610 63 HOH HOH . 
L 4 HOH A 111 611 104 HOH HOH . 
L 4 HOH A 112 612 68 HOH HOH . 
L 4 HOH A 113 613 51 HOH HOH . 
L 4 HOH A 114 614 89 HOH HOH . 
L 4 HOH A 115 615 76 HOH HOH . 
L 4 HOH A 116 616 98 HOH HOH . 
L 4 HOH A 117 617 37 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C12 E3U . A . K 3 0.349 9.378 -23.005 0.7 24.84 ? C12 E3U 410 A 1 
HETATM 2 C C12 E3U . B . K 3 -0.464 8.641 -24.23 0.3 26.23 ? C12 E3U 410 A 1 
HETATM 3 C C11 E3U . A . K 3 -0.044 8.611 -23.974 0.7 26.06 ? C11 E3U 410 A 1 
HETATM 4 C C11 E3U . B . K 3 -0.022 9.621 -23.499 0.3 25.27 ? C11 E3U 410 A 1 
HETATM 5 C C10 E3U . A . K 3 1.495 11.716 -25.672 0.7 31.24 ? C10 E3U 410 A 1 
HETATM 6 C C10 E3U . B . K 3 0.081 10.84 -27.187 0.3 28.35 ? C10 E3U 410 A 1 
HETATM 7 C C16 E3U . A . K 3 0.208 8.889 -21.657 0.7 30.63 ? C16 E3U 410 A 1 
HETATM 8 C C16 E3U . B . K 3 -0.851 7.414 -23.591 0.3 25.18 ? C16 E3U 410 A 1 
HETATM 9 C C15 E3U . A . K 3 -0.732 6.876 -22.466 0.7 22.34 ? C15 E3U 410 A 1 
HETATM 10 C C15 E3U . B . K 3 -0.3 8.351 -21.483 0.3 25.3 ? C15 E3U 410 A 1 
HETATM 11 C C17 E3U . A . K 3 -0.321 7.645 -21.432 0.7 22.07 ? C17 E3U 410 A 1 
HETATM 12 C C17 E3U . B . K 3 -0.765 7.308 -22.227 0.3 21.57 ? C17 E3U 410 A 1 
HETATM 13 C C14 E3U . A . K 3 -0.595 7.317 -23.766 0.7 25.64 ? C14 E3U 410 A 1 
HETATM 14 C C14 E3U . B . K 3 0.073 9.525 -22.09 0.3 28.12 ? C14 E3U 410 A 1 
HETATM 15 C C13 E3U . A . K 3 0.905 10.683 -23.281 0.7 28.04 ? C13 E3U 410 A 1 
HETATM 16 C C13 E3U . B . K 3 -0.543 8.799 -25.652 0.3 26 ? C13 E3U 410 A 1 
HETATM 17 C C01 E3U . A . K 3 0.092 9.284 -26.571 0.7 27.36 ? C01 E3U 410 A 1 
HETATM 18 C C01 E3U . B . K 3 0.766 12.027 -24.531 0.3 26.52 ? C01 E3U 410 A 1 
HETATM 19 C C02 E3U . A . K 3 -0.452 8.066 -27.015 0.7 25.08 ? C02 E3U 410 A 1 
HETATM 20 C C02 E3U . B . K 3 1.097 12.607 -23.296 0.3 26.46 ? C02 E3U 410 A 1 
HETATM 21 C C03 E3U . A . K 3 0.505 10.338 -27.482 0.7 27.61 ? C03 E3U 410 A 1 
HETATM 22 C C03 E3U . B . K 3 0.904 12.754 -25.789 0.3 27.32 ? C03 E3U 410 A 1 
HETATM 23 C C04 E3U . A . K 3 -0.618 7.869 -28.403 0.7 25.21 ? C04 E3U 410 A 1 
HETATM 24 C C04 E3U . B . K 3 1.589 13.933 -23.28 0.3 27.78 ? C04 E3U 410 A 1 
HETATM 25 C C05 E3U . A . K 3 0.336 10.135 -28.84 0.7 31.41 ? C05 E3U 410 A 1 
HETATM 26 C C05 E3U . B . K 3 1.393 14.058 -25.755 0.3 26.93 ? C05 E3U 410 A 1 
HETATM 27 C C06 E3U . A . K 3 -0.219 8.922 -29.302 0.7 28.59 ? C06 E3U 410 A 1 
HETATM 28 C C06 E3U . B . K 3 1.736 14.656 -24.519 0.3 29.28 ? C06 E3U 410 A 1 
HETATM 29 C C07 E3U . A . K 3 0.291 9.559 -25.195 0.7 24.09 ? C07 E3U 410 A 1 
HETATM 30 C C07 E3U . B . K 3 0.243 10.707 -24.631 0.3 25.75 ? C07 E3U 410 A 1 
HETATM 31 C C08 E3U . A . K 3 0.503 10.975 -24.665 0.7 25.13 ? C08 E3U 410 A 1 
HETATM 32 C C08 E3U . B . K 3 0.378 9.917 -25.907 0.3 26.41 ? C08 E3U 410 A 1 
HETATM 33 O O09 E3U . A . K 3 1.112 11.658 -26.969 0.7 31.29 ? O09 E3U 410 A 1 
HETATM 34 O O09 E3U . B . K 3 0.538 12.113 -27.145 0.3 29.34 ? O09 E3U 410 A 1 
HETATM 35 O O18 E3U . A . K 3 -0.437 7.211 -20.296 0.7 33.06 ? O18 E3U 410 A 1 
HETATM 36 O O18 E3U . B . K 3 -1.097 6.275 -21.678 0.3 22.06 ? O18 E3U 410 A 1 
HETATM 37 O O19 E3U . A . K 3 -1.271 5.61 -22.198 0.7 26.98 ? O19 E3U 410 A 1 
HETATM 38 O O19 E3U . B . K 3 -0.192 8.255 -20.082 0.3 28.11 ? O19 E3U 410 A 1 
HETATM 39 O O20 E3U . A . K 3 -0.63 11.808 -24.628 0.7 37.13 ? O20 E3U 410 A 1 
HETATM 40 O O20 E3U . B . K 3 1.688 9.44 -25.927 0.3 28.97 ? O20 E3U 410 A 1 
HETATM 41 O O21 E3U . A . K 3 0.721 11.132 -29.755 0.7 37.14 ? O21 E3U 410 A 1 
HETATM 42 O O21 E3U . B . K 3 1.539 14.774 -26.954 0.3 29.73 ? O21 E3U 410 A 1 
HETATM 43 O O22 E3U . A . K 3 -0.361 8.763 -30.68 0.7 30.83 ? O22 E3U 410 A 1 
HETATM 44 O O22 E3U . B . K 3 2.228 15.976 -24.498 0.3 33.05 ? O22 E3U 410 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           403 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           44 
#