data_6L38 # _model_server_result.job_id rr7kpRvXpHrYskXJUwAqTQ _model_server_result.datetime_utc '2024-10-31 06:15:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6l38 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 6L38 # _exptl.entry_id 6L38 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 276.675 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-chloro-5-nitro-N-phenylbenzamide _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.77 _cell.angle_gamma 90 _cell.entry_id 6L38 _cell.length_a 60.414 _cell.length_b 101.803 _cell.length_c 64.724 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6L38 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D 1 1 B,E,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 81 A CYS 276 1_555 C C9 GW9 . A GW9 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.804 ? covale ? covale2 A SG CYS 83 A CYS 278 1_555 D C9 GW9 . A GW9 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.796 ? covale ? covale3 B SG CYS 81 B CYS 276 1_555 E C9 GW9 . B GW9 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.804 ? covale ? covale4 B SG CYS 83 B CYS 278 1_555 F C9 GW9 . B GW9 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.802 ? # _chem_comp.formula 'C13 H9 Cl N2 O3' _chem_comp.formula_weight 276.675 _chem_comp.id GW9 _chem_comp.mon_nstd_flag . _chem_comp.name 2-chloro-5-nitro-N-phenylbenzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL C9 GW9 sing 129 n n C9 C10 GW9 doub 130 n y C9 C8 GW9 sing 131 n y C10 C11 GW9 sing 132 n y C10 H10 GW9 sing 133 n n C11 C12 GW9 doub 134 n y C11 H11 GW9 sing 135 n n C12 N2 GW9 sing 136 n n C12 C13 GW9 sing 137 n y N2 O3 GW9 sing 138 n n N2 O2 GW9 doub 139 n n C13 C8 GW9 doub 140 n y C13 H13 GW9 sing 141 n n C8 C1 GW9 sing 142 n n C1 O1 GW9 doub 143 n n C1 N1 GW9 sing 144 n n N1 C2 GW9 sing 145 n n N1 HN1 GW9 sing 146 n n C2 C7 GW9 doub 147 n y C2 C3 GW9 sing 148 n y C7 C6 GW9 sing 149 n y C7 H7 GW9 sing 150 n n C6 C5 GW9 doub 151 n y C6 H6 GW9 sing 152 n n C5 C4 GW9 sing 153 n y C5 H5 GW9 sing 154 n n C4 C3 GW9 doub 155 n y C4 H4 GW9 sing 156 n n C3 H3 GW9 sing 157 n n # _atom_sites.entry_id 6L38 _atom_sites.fract_transf_matrix[1][1] 0.016552 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004364 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009823 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015978 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GW9 A 1 501 1 GW9 GW9 . D 2 GW9 A 1 502 5 GW9 GW9 . E 2 GW9 B 1 501 2 GW9 GW9 . F 2 GW9 B 1 502 6 GW9 GW9 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C9 GW9 . . . D 2 -11.566 -1.339 33.514 1 105.39 ? C9 GW9 502 A 1 HETATM 2 C C10 GW9 . . . D 2 -11.762 -2.059 32.347 1 103.81 ? C10 GW9 502 A 1 HETATM 3 C C11 GW9 . . . D 2 -12.992 -2.021 31.712 1 103.29 ? C11 GW9 502 A 1 HETATM 4 C C12 GW9 . . . D 2 -14.018 -1.256 32.245 1 98.88 ? C12 GW9 502 A 1 HETATM 5 N N2 GW9 . . . D 2 -15.307 -1.216 31.581 1 109.1 ? N2 GW9 502 A 1 HETATM 6 O O3 GW9 . . . D 2 -16.46 -0.912 32.319 1 107.29 -1 O3 GW9 502 A 1 HETATM 7 O O2 GW9 . . . D 2 -15.384 -1.445 30.43 1 104.9 ? O2 GW9 502 A 1 HETATM 8 C C13 GW9 . . . D 2 -13.82 -0.534 33.412 1 82.88 ? C13 GW9 502 A 1 HETATM 9 C C8 GW9 . . . D 2 -12.588 -0.573 34.05 1 96.72 ? C8 GW9 502 A 1 HETATM 10 C C1 GW9 . . . D 2 -12.364 0.221 35.34 1 96.25 ? C1 GW9 502 A 1 HETATM 11 O O1 GW9 . . . D 2 -11.305 0.251 35.867 1 90.88 ? O1 GW9 502 A 1 HETATM 12 N N1 GW9 . . . D 2 -13.453 0.954 35.952 1 99.9 ? N1 GW9 502 A 1 HETATM 13 C C2 GW9 . . . D 2 -13.186 1.689 37.177 1 90.6 ? C2 GW9 502 A 1 HETATM 14 C C7 GW9 . . . D 2 -13.103 3.069 37.142 1 82.3 ? C7 GW9 502 A 1 HETATM 15 C C6 GW9 . . . D 2 -12.847 3.776 38.303 1 75.43 ? C6 GW9 502 A 1 HETATM 16 C C5 GW9 . . . D 2 -12.669 3.099 39.5 1 78.23 ? C5 GW9 502 A 1 HETATM 17 C C4 GW9 . . . D 2 -12.748 1.716 39.535 1 93.56 ? C4 GW9 502 A 1 HETATM 18 C C3 GW9 . . . D 2 -13.005 1.009 38.372 1 90.03 ? C3 GW9 502 A 1 HETATM 19 H H10 GW9 . . . D 2 -11.07 -2.57 31.993 1 124.61 ? H10 GW9 502 A 1 HETATM 20 H H11 GW9 . . . D 2 -13.128 -2.503 30.929 1 123.99 ? H11 GW9 502 A 1 HETATM 21 H H13 GW9 . . . D 2 -14.511 -0.024 33.768 1 99.49 ? H13 GW9 502 A 1 HETATM 22 H HN1 GW9 . . . D 2 -14.237 0.955 35.599 1 119.92 ? HN1 GW9 502 A 1 HETATM 23 H H7 GW9 . . . D 2 -13.224 3.522 36.338 1 98.79 ? H7 GW9 502 A 1 HETATM 24 H H6 GW9 . . . D 2 -12.794 4.704 38.281 1 90.56 ? H6 GW9 502 A 1 HETATM 25 H H5 GW9 . . . D 2 -12.496 3.574 40.281 1 93.91 ? H5 GW9 502 A 1 HETATM 26 H H4 GW9 . . . D 2 -12.629 1.263 40.338 1 112.31 ? H4 GW9 502 A 1 HETATM 27 H H3 GW9 . . . D 2 -13.059 0.081 38.393 1 108.08 ? H3 GW9 502 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 340 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #