data_6L38 # _model_server_result.job_id KRzNeEoYCeztH-qIctgP1g _model_server_result.datetime_utc '2024-12-18 02:23:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6l38 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":502}' # _entry.id 6L38 # _exptl.entry_id 6L38 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 276.675 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-chloro-5-nitro-N-phenylbenzamide _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.77 _cell.angle_gamma 90 _cell.entry_id 6L38 _cell.length_a 60.414 _cell.length_b 101.803 _cell.length_c 64.724 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6L38 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D 1 1 B,E,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 81 A CYS 276 1_555 C C9 GW9 . A GW9 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.804 ? covale ? covale2 A SG CYS 83 A CYS 278 1_555 D C9 GW9 . A GW9 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.796 ? covale ? covale3 B SG CYS 81 B CYS 276 1_555 E C9 GW9 . B GW9 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.804 ? covale ? covale4 B SG CYS 83 B CYS 278 1_555 F C9 GW9 . B GW9 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.802 ? # _chem_comp.formula 'C13 H9 Cl N2 O3' _chem_comp.formula_weight 276.675 _chem_comp.id GW9 _chem_comp.mon_nstd_flag . _chem_comp.name 2-chloro-5-nitro-N-phenylbenzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL C9 GW9 sing 129 n n C9 C10 GW9 doub 130 n y C9 C8 GW9 sing 131 n y C10 C11 GW9 sing 132 n y C10 H10 GW9 sing 133 n n C11 C12 GW9 doub 134 n y C11 H11 GW9 sing 135 n n C12 N2 GW9 sing 136 n n C12 C13 GW9 sing 137 n y N2 O3 GW9 sing 138 n n N2 O2 GW9 doub 139 n n C13 C8 GW9 doub 140 n y C13 H13 GW9 sing 141 n n C8 C1 GW9 sing 142 n n C1 O1 GW9 doub 143 n n C1 N1 GW9 sing 144 n n N1 C2 GW9 sing 145 n n N1 HN1 GW9 sing 146 n n C2 C7 GW9 doub 147 n y C2 C3 GW9 sing 148 n y C7 C6 GW9 sing 149 n y C7 H7 GW9 sing 150 n n C6 C5 GW9 doub 151 n y C6 H6 GW9 sing 152 n n C5 C4 GW9 sing 153 n y C5 H5 GW9 sing 154 n n C4 C3 GW9 doub 155 n y C4 H4 GW9 sing 156 n n C3 H3 GW9 sing 157 n n # _atom_sites.entry_id 6L38 _atom_sites.fract_transf_matrix[1][1] 0.016552 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004364 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009823 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015978 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GW9 A 1 501 1 GW9 GW9 . D 2 GW9 A 1 502 5 GW9 GW9 . E 2 GW9 B 1 501 2 GW9 GW9 . F 2 GW9 B 1 502 6 GW9 GW9 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C9 GW9 . . . F 2 33.88 25.135 12.225 1 117.06 ? C9 GW9 502 B 1 HETATM 2 C C10 GW9 . . . F 2 32.642 24.555 12.452 1 113.26 ? C10 GW9 502 B 1 HETATM 3 C C11 GW9 . . . F 2 32.012 24.72 13.675 1 111.28 ? C11 GW9 502 B 1 HETATM 4 C C12 GW9 . . . F 2 32.622 25.467 14.67 1 118.52 ? C12 GW9 502 B 1 HETATM 5 N N2 GW9 . . . F 2 31.959 25.639 15.948 1 123.46 ? N2 GW9 502 B 1 HETATM 6 O O3 GW9 . . . F 2 32.534 25.11 17.112 1 123.7 -1 O3 GW9 502 B 1 HETATM 7 O O2 GW9 . . . F 2 30.94 26.224 16.007 1 127.21 ? O2 GW9 502 B 1 HETATM 8 C C13 GW9 . . . F 2 33.862 26.049 14.445 1 110.38 ? C13 GW9 502 B 1 HETATM 9 C C8 GW9 . . . F 2 34.49 25.885 13.219 1 110.92 ? C8 GW9 502 B 1 HETATM 10 C C1 GW9 . . . F 2 35.862 26.515 12.962 1 107.04 ? C1 GW9 502 B 1 HETATM 11 O O1 GW9 . . . F 2 36.535 26.077 12.093 1 116.75 ? O1 GW9 502 B 1 HETATM 12 N N1 GW9 . . . F 2 36.329 27.625 13.784 1 97.08 ? N1 GW9 502 B 1 HETATM 13 C C2 GW9 . . . F 2 37.635 28.245 13.575 1 113.15 ? C2 GW9 502 B 1 HETATM 14 C C7 GW9 . . . F 2 38.245 28.91 14.628 1 115.84 ? C7 GW9 502 B 1 HETATM 15 C C6 GW9 . . . F 2 39.484 29.505 14.456 1 116.68 ? C6 GW9 502 B 1 HETATM 16 C C5 GW9 . . . F 2 40.12 29.443 13.226 1 109.5 ? C5 GW9 502 B 1 HETATM 17 C C4 GW9 . . . F 2 39.515 28.783 12.171 1 111.95 ? C4 GW9 502 B 1 HETATM 18 C C3 GW9 . . . F 2 38.275 28.189 12.345 1 113.46 ? C3 GW9 502 B 1 HETATM 19 H H10 GW9 . . . F 2 32.234 24.055 11.783 1 135.95 ? H10 GW9 502 B 1 HETATM 20 H H11 GW9 . . . F 2 31.18 24.333 13.827 1 133.57 ? H11 GW9 502 B 1 HETATM 21 H H13 GW9 . . . F 2 34.27 26.549 15.115 1 132.49 ? H13 GW9 502 B 1 HETATM 22 H HN1 GW9 . . . F 2 35.822 27.921 14.413 1 116.53 ? HN1 GW9 502 B 1 HETATM 23 H H7 GW9 . . . F 2 37.822 28.952 15.455 1 139.05 ? H7 GW9 502 B 1 HETATM 24 H H6 GW9 . . . F 2 39.89 29.948 15.166 1 140.06 ? H6 GW9 502 B 1 HETATM 25 H H5 GW9 . . . F 2 40.951 29.844 13.11 1 131.44 ? H5 GW9 502 B 1 HETATM 26 H H4 GW9 . . . F 2 39.939 28.74 11.345 1 134.38 ? H4 GW9 502 B 1 HETATM 27 H H3 GW9 . . . F 2 37.872 27.745 11.634 1 136.2 ? H3 GW9 502 B 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 27 #