data_6L3H # _model_server_result.job_id HcMrcjfAVPPNc2nwAzk6tg _model_server_result.datetime_utc '2024-11-02 01:28:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6l3h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":801}' # _entry.id 6L3H # _exptl.entry_id 6L3H _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6L3H _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6L3H _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 76 A GLY 76 1_555 F CA CA . A CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.572 ? metalc ? metalc2 A OH TYR 78 A TYR 78 1_555 F CA CA . A CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.976 ? metalc ? metalc3 A NE2 HIS 335 A HIS 335 1_555 C FE HEM . A HEM 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? metalc ? metalc4 A OE2 GLU 411 A GLU 411 1_555 F CA CA . A CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc5 A ND1 HIS 490 A HIS 490 1_555 E FE FE . A FE 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc6 A OE1 GLU 494 A GLU 494 1_555 E FE FE . A FE 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? metalc ? metalc7 A NE2 HIS 541 A HIS 541 1_555 E FE FE . A FE 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.548 ? metalc ? metalc8 A NE2 HIS 542 A HIS 542 1_555 E FE FE . A FE 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc9 A NE2 HIS 633 A HIS 633 1_555 D FE HEM . A HEM 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.506 ? metalc ? metalc10 A NE2 HIS 635 A HIS 635 1_555 C FE HEM . A HEM 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.521 ? metalc ? metalc11 C O1D HEM . A HEM 801 1_555 F CA CA . A CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.753 ? metalc ? metalc12 D O1A HEM . A HEM 802 1_555 F CA CA . A CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? metalc ? metalc13 B O GLY 76 B GLY 76 1_555 J CA CA . B CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.572 ? metalc ? metalc14 B OH TYR 78 B TYR 78 1_555 J CA CA . B CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.977 ? metalc ? metalc15 B NE2 HIS 335 B HIS 335 1_555 G FE HEM . B HEM 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.477 ? metalc ? metalc16 B OE2 GLU 411 B GLU 411 1_555 J CA CA . B CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc17 B ND1 HIS 490 B HIS 490 1_555 I FE FE . B FE 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc18 B OE1 GLU 494 B GLU 494 1_555 I FE FE . B FE 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? metalc ? metalc19 B NE2 HIS 541 B HIS 541 1_555 I FE FE . B FE 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.548 ? metalc ? metalc20 B NE2 HIS 542 B HIS 542 1_555 I FE FE . B FE 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc21 B NE2 HIS 633 B HIS 633 1_555 H FE HEM . B HEM 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.505 ? metalc ? metalc22 B NE2 HIS 635 B HIS 635 1_555 G FE HEM . B HEM 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.522 ? metalc ? metalc23 G O1D HEM . B HEM 801 1_555 J CA CA . B CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.752 ? metalc ? metalc24 H O1A HEM . B HEM 802 1_555 J CA CA . B CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 6L3H _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 801 773 HEM HEM . D 2 HEM A 1 802 774 HEM HEM . E 3 FE A 1 803 801 FE FE . F 4 CA A 1 804 778 CA CA . G 2 HEM B 1 801 773 HEM HEM . H 2 HEM B 1 802 774 HEM HEM . I 3 FE B 1 803 801 FE FE . J 4 CA B 1 804 778 CA CA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . C 2 117.274 131.476 111.934 1 31.2 ? CHA HEM 801 A 1 HETATM 2 C CHB HEM . . . C 2 121.94 131.691 110.75 1 31.2 ? CHB HEM 801 A 1 HETATM 3 C CHC HEM . . . C 2 120.724 131.87 106.096 1 31.2 ? CHC HEM 801 A 1 HETATM 4 C CHD HEM . . . C 2 116.039 131.946 107.279 1 31.2 ? CHD HEM 801 A 1 HETATM 5 C C1A HEM . . . C 2 118.634 131.579 112.016 1 31.2 ? C1A HEM 801 A 1 HETATM 6 C C2A HEM . . . C 2 119.391 131.737 113.23 1 31.2 ? C2A HEM 801 A 1 HETATM 7 C C3A HEM . . . C 2 120.677 131.803 112.904 1 31.2 ? C3A HEM 801 A 1 HETATM 8 C C4A HEM . . . C 2 120.776 131.677 111.473 1 31.2 ? C4A HEM 801 A 1 HETATM 9 C CMA HEM . . . C 2 121.875 131.977 113.854 1 31.2 ? CMA HEM 801 A 1 HETATM 10 C CAA HEM . . . C 2 118.778 131.832 114.636 1 31.2 ? CAA HEM 801 A 1 HETATM 11 C CBA HEM . . . C 2 119.127 130.606 115.465 1 31.2 ? CBA HEM 801 A 1 HETATM 12 C CGA HEM . . . C 2 118.658 130.846 116.868 1 31.2 ? CGA HEM 801 A 1 HETATM 13 O O1A HEM . . . C 2 117.56 131.429 117.034 1 31.2 ? O1A HEM 801 A 1 HETATM 14 O O2A HEM . . . C 2 119.377 130.452 117.813 1 31.2 ? O2A HEM 801 A 1 HETATM 15 C C1B HEM . . . C 2 122.012 131.752 109.383 1 31.2 ? C1B HEM 801 A 1 HETATM 16 C C2B HEM . . . C 2 123.228 131.818 108.615 1 31.2 ? C2B HEM 801 A 1 HETATM 17 C C3B HEM . . . C 2 122.891 131.865 107.324 1 31.2 ? C3B HEM 801 A 1 HETATM 18 C C4B HEM . . . C 2 121.453 131.836 107.253 1 31.2 ? C4B HEM 801 A 1 HETATM 19 C CMB HEM . . . C 2 124.63 131.821 109.255 1 31.2 ? CMB HEM 801 A 1 HETATM 20 C CAB HEM . . . C 2 123.774 131.946 106.06 1 31.2 ? CAB HEM 801 A 1 HETATM 21 C CBB HEM . . . C 2 125.103 132.038 106.069 1 31.2 ? CBB HEM 801 A 1 HETATM 22 C C1C HEM . . . C 2 119.358 131.914 106.011 1 31.2 ? C1C HEM 801 A 1 HETATM 23 C C2C HEM . . . C 2 118.611 131.992 104.789 1 31.2 ? C2C HEM 801 A 1 HETATM 24 C C3C HEM . . . C 2 117.318 132.016 105.083 1 31.2 ? C3C HEM 801 A 1 HETATM 25 C C4C HEM . . . C 2 117.191 131.951 106.528 1 31.2 ? C4C HEM 801 A 1 HETATM 26 C CMC HEM . . . C 2 119.221 132.039 103.38 1 31.2 ? CMC HEM 801 A 1 HETATM 27 C CAC HEM . . . C 2 116.216 132.099 104.01 1 31.2 ? CAC HEM 801 A 1 HETATM 28 C CBC HEM . . . C 2 114.921 132.117 104.315 1 31.2 ? CBC HEM 801 A 1 HETATM 29 C C1D HEM . . . C 2 115.974 131.75 108.638 1 31.2 ? C1D HEM 801 A 1 HETATM 30 C C2D HEM . . . C 2 114.779 131.488 109.403 1 31.2 ? C2D HEM 801 A 1 HETATM 31 C C3D HEM . . . C 2 115.117 131.355 110.676 1 31.2 ? C3D HEM 801 A 1 HETATM 32 C C4D HEM . . . C 2 116.543 131.535 110.775 1 31.2 ? C4D HEM 801 A 1 HETATM 33 C CMD HEM . . . C 2 113.353 131.371 108.849 1 31.2 ? CMD HEM 801 A 1 HETATM 34 C CAD HEM . . . C 2 114.152 131.068 111.841 1 31.2 ? CAD HEM 801 A 1 HETATM 35 C CBD HEM . . . C 2 114.438 129.686 112.409 1 31.2 ? CBD HEM 801 A 1 HETATM 36 C CGD HEM . . . C 2 113.534 129.425 113.577 1 31.2 ? CGD HEM 801 A 1 HETATM 37 O O1D HEM . . . C 2 112.889 130.383 114.06 1 31.2 ? O1D HEM 801 A 1 HETATM 38 O O2D HEM . . . C 2 113.458 128.262 114.031 1 31.2 ? O2D HEM 801 A 1 HETATM 39 N NA HEM . . . C 2 119.506 131.542 110.954 1 31.2 ? NA HEM 801 A 1 HETATM 40 N NB HEM . . . C 2 120.941 131.766 108.523 1 31.2 ? NB HEM 801 A 1 HETATM 41 N NC HEM . . . C 2 118.465 131.89 107.058 1 31.2 ? NC HEM 801 A 1 HETATM 42 N ND HEM . . . C 2 117.041 131.772 109.511 1 31.2 ? ND HEM 801 A 1 HETATM 43 FE FE HEM . . . C 2 118.983 131.65 108.985 1 31.2 ? FE HEM 801 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #