data_6L3U # _model_server_result.job_id '_I0svyHKOhYK7IkyWDopiw' _model_server_result.datetime_utc '2024-11-05 04:08:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6l3u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":302}' # _entry.id 6L3U # _exptl.entry_id 6L3U _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6L3U _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6L3U _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 H N N ? 3 K N N ? 3 M N N ? 3 O N N ? 3 Q N N ? 3 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 53 A CYS 53 1_555 A SG CYS 180 A CYS 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 A SG CYS 60 A CYS 60 1_555 A SG CYS 174 A CYS 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 169 A CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf4 B SG CYS 53 B CYS 53 1_555 B SG CYS 180 B CYS 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf5 B SG CYS 60 B CYS 60 1_555 B SG CYS 174 B CYS 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf6 B SG CYS 64 B CYS 64 1_555 B SG CYS 169 B CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf7 C SG CYS 53 C CYS 53 1_555 C SG CYS 180 C CYS 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf8 C SG CYS 60 C CYS 60 1_555 C SG CYS 174 C CYS 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf9 C SG CYS 64 C CYS 64 1_555 C SG CYS 169 C CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf10 D SG CYS 53 D CYS 53 1_555 D SG CYS 180 D CYS 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf11 D SG CYS 60 D CYS 60 1_555 D SG CYS 174 D CYS 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf12 D SG CYS 64 D CYS 64 1_555 D SG CYS 169 D CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf13 E SG CYS 53 E CYS 53 1_555 E SG CYS 180 E CYS 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf14 E SG CYS 60 E CYS 60 1_555 E SG CYS 174 E CYS 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf15 E SG CYS 64 E CYS 64 1_555 E SG CYS 169 E CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf16 F SG CYS 53 F CYS 53 1_555 F SG CYS 180 F CYS 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf17 F SG CYS 60 F CYS 60 1_555 F SG CYS 174 F CYS 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf18 F SG CYS 64 F CYS 64 1_555 F SG CYS 169 F CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc1 A OD1 ASP 66 A ASP 66 1_555 H CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? metalc ? metalc2 B OD1 ASP 66 B ASP 66 1_555 K CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? metalc ? metalc3 C OD1 ASP 66 C ASP 66 1_555 M CA CA . C CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? metalc ? metalc4 D OD1 ASP 66 D ASP 66 1_555 O CA CA . D CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.469 ? metalc ? metalc5 E OD1 ASP 66 E ASP 66 1_555 Q CA CA . E CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? metalc ? metalc6 F OD1 ASP 66 F ASP 66 1_555 R CA CA . F CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6L3U _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 LMN A 1 301 280 LMN LMN . H 3 CA A 1 302 281 CA CA . I 2 LMN A 1 303 280 LMN LMN . J 2 LMN B 1 301 280 LMN LMN . K 3 CA B 1 302 281 CA CA . L 2 LMN C 1 301 280 LMN LMN . M 3 CA C 1 302 281 CA CA . N 2 LMN D 1 301 280 LMN LMN . O 3 CA D 1 302 281 CA CA . P 2 LMN E 1 301 280 LMN LMN . Q 3 CA E 1 302 281 CA CA . R 3 CA F 1 301 281 CA CA . S 4 HOH A 1 401 290 HOH HOH . S 4 HOH A 2 402 304 HOH HOH . S 4 HOH A 3 403 284 HOH HOH . S 4 HOH A 4 404 282 HOH HOH . S 4 HOH A 5 405 293 HOH HOH . S 4 HOH A 6 406 297 HOH HOH . S 4 HOH A 7 407 307 HOH HOH . S 4 HOH A 8 408 305 HOH HOH . S 4 HOH A 9 409 295 HOH HOH . S 4 HOH A 10 410 296 HOH HOH . S 4 HOH A 11 411 285 HOH HOH . S 4 HOH A 12 412 289 HOH HOH . S 4 HOH A 13 413 302 HOH HOH . S 4 HOH A 14 414 291 HOH HOH . S 4 HOH A 15 415 301 HOH HOH . S 4 HOH A 16 416 288 HOH HOH . S 4 HOH A 17 417 294 HOH HOH . S 4 HOH A 18 418 300 HOH HOH . S 4 HOH A 19 419 306 HOH HOH . S 4 HOH A 20 420 310 HOH HOH . S 4 HOH A 21 421 286 HOH HOH . S 4 HOH A 22 422 299 HOH HOH . S 4 HOH A 23 423 292 HOH HOH . S 4 HOH A 24 424 298 HOH HOH . S 4 HOH A 25 425 303 HOH HOH . S 4 HOH A 26 426 287 HOH HOH . S 4 HOH A 27 427 308 HOH HOH . S 4 HOH A 28 428 283 HOH HOH . S 4 HOH A 29 429 309 HOH HOH . T 4 HOH B 1 401 290 HOH HOH . T 4 HOH B 2 402 284 HOH HOH . T 4 HOH B 3 403 304 HOH HOH . T 4 HOH B 4 404 282 HOH HOH . T 4 HOH B 5 405 293 HOH HOH . T 4 HOH B 6 406 297 HOH HOH . T 4 HOH B 7 407 307 HOH HOH . T 4 HOH B 8 408 305 HOH HOH . T 4 HOH B 9 409 296 HOH HOH . T 4 HOH B 10 410 295 HOH HOH . T 4 HOH B 11 411 285 HOH HOH . T 4 HOH B 12 412 302 HOH HOH . T 4 HOH B 13 413 291 HOH HOH . T 4 HOH B 14 414 289 HOH HOH . T 4 HOH B 15 415 301 HOH HOH . T 4 HOH B 16 416 294 HOH HOH . T 4 HOH B 17 417 288 HOH HOH . T 4 HOH B 18 418 300 HOH HOH . T 4 HOH B 19 419 299 HOH HOH . T 4 HOH B 20 420 306 HOH HOH . T 4 HOH B 21 421 286 HOH HOH . T 4 HOH B 22 422 310 HOH HOH . T 4 HOH B 23 423 292 HOH HOH . T 4 HOH B 24 424 303 HOH HOH . T 4 HOH B 25 425 298 HOH HOH . T 4 HOH B 26 426 287 HOH HOH . T 4 HOH B 27 427 308 HOH HOH . T 4 HOH B 28 428 309 HOH HOH . T 4 HOH B 29 429 283 HOH HOH . U 4 HOH C 1 401 290 HOH HOH . U 4 HOH C 2 402 284 HOH HOH . U 4 HOH C 3 403 304 HOH HOH . U 4 HOH C 4 404 282 HOH HOH . U 4 HOH C 5 405 293 HOH HOH . U 4 HOH C 6 406 297 HOH HOH . U 4 HOH C 7 407 307 HOH HOH . U 4 HOH C 8 408 305 HOH HOH . U 4 HOH C 9 409 296 HOH HOH . U 4 HOH C 10 410 295 HOH HOH . U 4 HOH C 11 411 285 HOH HOH . U 4 HOH C 12 412 302 HOH HOH . U 4 HOH C 13 413 291 HOH HOH . U 4 HOH C 14 414 289 HOH HOH . U 4 HOH C 15 415 301 HOH HOH . U 4 HOH C 16 416 288 HOH HOH . U 4 HOH C 17 417 294 HOH HOH . U 4 HOH C 18 418 300 HOH HOH . U 4 HOH C 19 419 299 HOH HOH . U 4 HOH C 20 420 306 HOH HOH . U 4 HOH C 21 421 286 HOH HOH . U 4 HOH C 22 422 310 HOH HOH . U 4 HOH C 23 423 292 HOH HOH . U 4 HOH C 24 424 303 HOH HOH . U 4 HOH C 25 425 298 HOH HOH . U 4 HOH C 26 426 287 HOH HOH . U 4 HOH C 27 427 308 HOH HOH . U 4 HOH C 28 428 309 HOH HOH . U 4 HOH C 29 429 283 HOH HOH . V 4 HOH D 1 401 290 HOH HOH . V 4 HOH D 2 402 304 HOH HOH . V 4 HOH D 3 403 284 HOH HOH . V 4 HOH D 4 404 282 HOH HOH . V 4 HOH D 5 405 293 HOH HOH . V 4 HOH D 6 406 297 HOH HOH . V 4 HOH D 7 407 307 HOH HOH . V 4 HOH D 8 408 305 HOH HOH . V 4 HOH D 9 409 296 HOH HOH . V 4 HOH D 10 410 295 HOH HOH . V 4 HOH D 11 411 285 HOH HOH . V 4 HOH D 12 412 291 HOH HOH . V 4 HOH D 13 413 302 HOH HOH . V 4 HOH D 14 414 289 HOH HOH . V 4 HOH D 15 415 301 HOH HOH . V 4 HOH D 16 416 288 HOH HOH . V 4 HOH D 17 417 294 HOH HOH . V 4 HOH D 18 418 300 HOH HOH . V 4 HOH D 19 419 299 HOH HOH . V 4 HOH D 20 420 306 HOH HOH . V 4 HOH D 21 421 286 HOH HOH . V 4 HOH D 22 422 310 HOH HOH . V 4 HOH D 23 423 292 HOH HOH . V 4 HOH D 24 424 303 HOH HOH . V 4 HOH D 25 425 298 HOH HOH . V 4 HOH D 26 426 287 HOH HOH . V 4 HOH D 27 427 308 HOH HOH . V 4 HOH D 28 428 283 HOH HOH . V 4 HOH D 29 429 309 HOH HOH . W 4 HOH E 1 401 290 HOH HOH . W 4 HOH E 2 402 284 HOH HOH . W 4 HOH E 3 403 304 HOH HOH . W 4 HOH E 4 404 282 HOH HOH . W 4 HOH E 5 405 293 HOH HOH . W 4 HOH E 6 406 297 HOH HOH . W 4 HOH E 7 407 307 HOH HOH . W 4 HOH E 8 408 305 HOH HOH . W 4 HOH E 9 409 296 HOH HOH . W 4 HOH E 10 410 295 HOH HOH . W 4 HOH E 11 411 285 HOH HOH . W 4 HOH E 12 412 302 HOH HOH . W 4 HOH E 13 413 291 HOH HOH . W 4 HOH E 14 414 289 HOH HOH . W 4 HOH E 15 415 301 HOH HOH . W 4 HOH E 16 416 294 HOH HOH . W 4 HOH E 17 417 288 HOH HOH . W 4 HOH E 18 418 300 HOH HOH . W 4 HOH E 19 419 306 HOH HOH . W 4 HOH E 20 420 299 HOH HOH . W 4 HOH E 21 421 286 HOH HOH . W 4 HOH E 22 422 310 HOH HOH . W 4 HOH E 23 423 292 HOH HOH . W 4 HOH E 24 424 303 HOH HOH . W 4 HOH E 25 425 298 HOH HOH . W 4 HOH E 26 426 287 HOH HOH . W 4 HOH E 27 427 308 HOH HOH . W 4 HOH E 28 428 309 HOH HOH . W 4 HOH E 29 429 283 HOH HOH . X 4 HOH F 1 401 290 HOH HOH . X 4 HOH F 2 402 284 HOH HOH . X 4 HOH F 3 403 304 HOH HOH . X 4 HOH F 4 404 282 HOH HOH . X 4 HOH F 5 405 293 HOH HOH . X 4 HOH F 6 406 297 HOH HOH . X 4 HOH F 7 407 307 HOH HOH . X 4 HOH F 8 408 305 HOH HOH . X 4 HOH F 9 409 296 HOH HOH . X 4 HOH F 10 410 295 HOH HOH . X 4 HOH F 11 411 285 HOH HOH . X 4 HOH F 12 412 302 HOH HOH . X 4 HOH F 13 413 291 HOH HOH . X 4 HOH F 14 414 289 HOH HOH . X 4 HOH F 15 415 301 HOH HOH . X 4 HOH F 16 416 288 HOH HOH . X 4 HOH F 17 417 294 HOH HOH . X 4 HOH F 18 418 300 HOH HOH . X 4 HOH F 19 419 299 HOH HOH . X 4 HOH F 20 420 306 HOH HOH . X 4 HOH F 21 421 286 HOH HOH . X 4 HOH F 22 422 310 HOH HOH . X 4 HOH F 23 423 292 HOH HOH . X 4 HOH F 24 424 303 HOH HOH . X 4 HOH F 25 425 298 HOH HOH . X 4 HOH F 26 426 287 HOH HOH . X 4 HOH F 27 427 308 HOH HOH . X 4 HOH F 28 428 309 HOH HOH . X 4 HOH F 29 429 283 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 3 _atom_site.Cartn_x 122.546 _atom_site.Cartn_y 90.002 _atom_site.Cartn_z 132.843 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 31.87 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 302 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 49 _model_server_stats.query_time_ms 338 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #