data_6L4K # _model_server_result.job_id K6L1SdwqGy_T6zG5v_cMCA _model_server_result.datetime_utc '2024-11-24 09:31:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6l4k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1007}' # _entry.id 6L4K # _exptl.entry_id 6L4K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 393.793 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-bromanyl-9-ethyl-~{N},~{N},7-trimethyl-3-thia-1$l^{4},5,6$l^{4},10-tetraza-2$l^{4}-cupratricyclo[6.4.0.0^{2,6}]dodeca-1(8),4,6,9,11-pentaen-4-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 74.89 _cell.angle_beta 89.68 _cell.angle_gamma 80.04 _cell.entry_id 6L4K _cell.length_a 38.356 _cell.length_b 93.523 _cell.length_c 96.359 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6L4K _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I 1 1 B,J,K,L,M,N,O 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 51 A CYS 53 1_555 A SG CYS 60 A CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 73 A CYS 75 1_555 A SG CYS 89 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? disulf ? disulf3 A SG CYS 88 A CYS 90 1_555 A SG CYS 99 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? disulf ? disulf4 A SG CYS 122 A CYS 124 1_555 A SG CYS 167 A CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? disulf ? disulf5 A SG CYS 166 A CYS 168 1_555 A SG CYS 175 A CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf6 A SG CYS 198 A CYS 200 1_555 A SG CYS 244 A CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf7 A SG CYS 243 A CYS 245 1_555 A SG CYS 251 A CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? disulf ? disulf8 A SG CYS 263 A CYS 265 1_555 A SG CYS 277 A CYS 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf9 A SG CYS 276 A CYS 278 1_555 A SG CYS 287 A CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? disulf ? disulf10 A SG CYS 314 A CYS 316 1_555 A SG CYS 359 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf11 A SG CYS 358 A CYS 360 1_555 A SG CYS 367 A CYS 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? disulf ? disulf12 A SG CYS 390 A CYS 392 1_555 A SG CYS 436 A CYS 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf13 A SG CYS 435 A CYS 437 1_555 A SG CYS 446 A CYS 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? disulf ? disulf14 A SG CYS 459 A CYS 461 1_555 A SG CYS 475 A CYS 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf15 A SG CYS 474 A CYS 476 1_555 A SG CYS 485 A CYS 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? disulf ? disulf16 A SG CYS 512 A CYS 514 1_555 A SG CYS 557 A CYS 559 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf17 A SG CYS 556 A CYS 558 1_555 A SG CYS 565 A CYS 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? disulf ? disulf18 B SG CYS 51 I CYS 53 1_555 B SG CYS 60 I CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf19 B SG CYS 73 I CYS 75 1_555 B SG CYS 89 I CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? disulf ? disulf20 B SG CYS 88 I CYS 90 1_555 B SG CYS 99 I CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf21 B SG CYS 122 I CYS 124 1_555 B SG CYS 167 I CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf22 B SG CYS 166 I CYS 168 1_555 B SG CYS 175 I CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? disulf ? disulf23 B SG CYS 198 I CYS 200 1_555 B SG CYS 244 I CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf24 B SG CYS 243 I CYS 245 1_555 B SG CYS 251 I CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf25 B SG CYS 263 I CYS 265 1_555 B SG CYS 277 I CYS 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf26 B SG CYS 276 I CYS 278 1_555 B SG CYS 287 I CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? disulf ? disulf27 B SG CYS 314 I CYS 316 1_555 B SG CYS 359 I CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? disulf ? disulf28 B SG CYS 358 I CYS 360 1_555 B SG CYS 367 I CYS 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? disulf ? disulf29 B SG CYS 390 I CYS 392 1_555 B SG CYS 436 I CYS 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf30 B SG CYS 435 I CYS 437 1_555 B SG CYS 446 I CYS 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? disulf ? disulf31 B SG CYS 459 I CYS 461 1_555 B SG CYS 475 I CYS 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf32 B SG CYS 474 I CYS 476 1_555 B SG CYS 485 I CYS 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? disulf ? disulf33 B SG CYS 512 I CYS 514 1_555 B SG CYS 557 I CYS 559 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf34 B SG CYS 556 I CYS 558 1_555 B SG CYS 565 I CYS 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? metalc ? metalc1 A NE2 HIS 240 A HIS 242 1_555 I CU E5O . A E5O 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? # _chem_comp.formula 'C11 H16 Br Cu N5 S' _chem_comp.formula_weight 393.793 _chem_comp.id E5O _chem_comp.mon_nstd_flag . _chem_comp.name 2-bromanyl-9-ethyl-~{N},~{N},7-trimethyl-3-thia-1$l^{4},5,6$l^{4},10-tetraza-2$l^{4}-cupratricyclo[6.4.0.0^{2,6}]dodeca-1(8),4,6,9,11-pentaen-4-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C1 E5O doub 83 n y C2 N5 E5O sing 84 n y C1 N4 E5O sing 85 n y N5 C3 E5O doub 86 n y N4 CU E5O sing 87 n n N4 C4 E5O doub 88 n y CU S E5O sing 89 n n C3 C4 E5O sing 90 n y C3 C5 E5O sing 91 n n C4 C7 E5O sing 92 n n C5 C6 E5O sing 93 n n S C9 E5O sing 94 n n N1 C7 E5O doub 95 n n N1 N2 E5O sing 96 n n C7 C8 E5O sing 97 n n N2 C9 E5O doub 98 n n C9 N3 E5O sing 99 n n N3 C10 E5O sing 100 n n N3 C11 E5O sing 101 n n C1 H1 E5O sing 102 n n C2 H2 E5O sing 103 n n C5 H3 E5O sing 104 n n C5 H4 E5O sing 105 n n C6 H5 E5O sing 106 n n C6 H6 E5O sing 107 n n C6 H7 E5O sing 108 n n C8 H8 E5O sing 109 n n C8 H9 E5O sing 110 n n C8 H10 E5O sing 111 n n C10 H11 E5O sing 112 n n C10 H12 E5O sing 113 n n C10 H13 E5O sing 114 n n C11 H14 E5O sing 115 n n C11 H15 E5O sing 116 n n C11 H16 E5O sing 117 n n CU N1 E5O sing 118 n n CU BR1 E5O sing 119 n n # _atom_sites.entry_id 6L4K _atom_sites.fract_transf_matrix[1][1] 0.026072 _atom_sites.fract_transf_matrix[1][2] -0.004577 _atom_sites.fract_transf_matrix[1][3] 0.001098 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010856 _atom_sites.fract_transf_matrix[2][3] -0.002967 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010759 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PLM A 1 1001 1001 PLM PLM . D 2 PLM A 1 1002 1002 PLM PLM . E 2 PLM A 1 1003 1003 PLM PLM . F 2 PLM A 1 1004 1004 PLM PLM . G 2 PLM A 1 1005 1005 PLM PLM . H 2 PLM A 1 1006 1006 PLM PLM . I 3 E5O A 1 1007 1 E5O Cu2 . J 2 PLM I 1 1001 1001 PLM PLM . K 2 PLM I 1 1002 1002 PLM PLM . L 2 PLM I 1 1003 1003 PLM PLM . M 2 PLM I 1 1004 1004 PLM PLM . N 2 PLM I 1 1005 1005 PLM PLM . O 2 PLM I 1 1006 1006 PLM PLM . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 E5O . . . I 3 4.968 9.427 9.791 1 67.27 ? C4 E5O 1007 A 1 HETATM 2 N N4 E5O . . . I 3 3.571 9.487 9.441 1 67.28 ? N4 E5O 1007 A 1 HETATM 3 C C1 E5O . . . I 3 2.995 10.614 9.071 1 62.81 ? C1 E5O 1007 A 1 HETATM 4 C C2 E5O . . . I 3 3.733 11.774 8.986 1 62.97 ? C2 E5O 1007 A 1 HETATM 5 N N5 E5O . . . I 3 5.01 11.825 9.267 1 63.5 ? N5 E5O 1007 A 1 HETATM 6 C C3 E5O . . . I 3 5.683 10.748 9.672 1 65.62 ? C3 E5O 1007 A 1 HETATM 7 C C5 E5O . . . I 3 7.065 11.175 9.898 1 64.95 ? C5 E5O 1007 A 1 HETATM 8 C C6 E5O . . . I 3 8.185 10.335 10.362 1 64.65 ? C6 E5O 1007 A 1 HETATM 9 C C7 E5O . . . I 3 5.49 8.06 10.209 1 65.43 ? C7 E5O 1007 A 1 HETATM 10 N N1 E5O . . . I 3 4.549 7.142 10.205 1 65.75 ? N1 E5O 1007 A 1 HETATM 11 C C8 E5O . . . I 3 6.859 7.554 10.642 1 65.79 ? C8 E5O 1007 A 1 HETATM 12 N N2 E5O . . . I 3 4.718 5.857 10.628 1 71.64 ? N2 E5O 1007 A 1 HETATM 13 CU CU E5O . . . I 3 2.253 7.865 9.544 1 80.7 ? CU E5O 1007 A 1 HETATM 14 C C9 E5O . . . I 3 3.693 5.021 10.643 1 82.01 ? C9 E5O 1007 A 1 HETATM 15 S S E5O . . . I 3 2.147 5.542 10.121 1 88.49 ? S E5O 1007 A 1 HETATM 16 N N3 E5O . . . I 3 3.965 3.848 11.064 1 85.61 ? N3 E5O 1007 A 1 HETATM 17 C C10 E5O . . . I 3 2.953 2.821 11.121 1 87.3 ? C10 E5O 1007 A 1 HETATM 18 C C11 E5O . . . I 3 5.287 3.387 11.513 1 89.51 ? C11 E5O 1007 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 47 _model_server_stats.query_time_ms 470 _model_server_stats.encode_time_ms 30 _model_server_stats.element_count 18 #