data_6L4P # _model_server_result.job_id Iur2bpKsAnP4BDXqdlt-nQ _model_server_result.datetime_utc '2024-10-10 19:26:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6l4p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1801}' # _entry.id 6L4P # _exptl.entry_id 6L4P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6L4P _cell.length_a 44.55 _cell.length_b 73.028 _cell.length_c 94.564 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6L4P _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 F O HOH . A HOH 385 2_664 E NA NA . B NA 1801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.578 ? metalc ? metalc2 B O ASP 24 B ASP 1662 1_555 E NA NA . B NA 1801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.839 ? metalc ? metalc3 E NA NA . B NA 1801 1_555 G O HOH . B HOH 1934 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.621 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6L4P _atom_sites.fract_transf_matrix[1][1] 0.022447 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013693 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010575 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 PO4 A 1 201 1 PO4 PO4 . D 4 TRS A 1 202 1 TRS TRS . E 5 NA B 1 1801 1 NA NA . F 6 HOH A 1 301 39 HOH HOH . F 6 HOH A 2 302 73 HOH HOH . F 6 HOH A 3 303 18 HOH HOH . F 6 HOH A 4 304 142 HOH HOH . F 6 HOH A 5 305 28 HOH HOH . F 6 HOH A 6 306 17 HOH HOH . F 6 HOH A 7 307 42 HOH HOH . F 6 HOH A 8 308 105 HOH HOH . F 6 HOH A 9 309 132 HOH HOH . F 6 HOH A 10 310 69 HOH HOH . F 6 HOH A 11 311 16 HOH HOH . F 6 HOH A 12 312 43 HOH HOH . F 6 HOH A 13 313 4 HOH HOH . F 6 HOH A 14 314 66 HOH HOH . F 6 HOH A 15 315 128 HOH HOH . F 6 HOH A 16 316 41 HOH HOH . F 6 HOH A 17 317 49 HOH HOH . F 6 HOH A 18 318 2 HOH HOH . F 6 HOH A 19 319 56 HOH HOH . F 6 HOH A 20 320 170 HOH HOH . F 6 HOH A 21 321 45 HOH HOH . F 6 HOH A 22 322 68 HOH HOH . F 6 HOH A 23 323 144 HOH HOH . F 6 HOH A 24 324 33 HOH HOH . F 6 HOH A 25 325 74 HOH HOH . F 6 HOH A 26 326 25 HOH HOH . F 6 HOH A 27 327 59 HOH HOH . F 6 HOH A 28 328 167 HOH HOH . F 6 HOH A 29 329 40 HOH HOH . F 6 HOH A 30 330 7 HOH HOH . F 6 HOH A 31 331 117 HOH HOH . F 6 HOH A 32 332 34 HOH HOH . F 6 HOH A 33 333 169 HOH HOH . F 6 HOH A 34 334 112 HOH HOH . F 6 HOH A 35 335 3 HOH HOH . F 6 HOH A 36 336 107 HOH HOH . F 6 HOH A 37 337 22 HOH HOH . F 6 HOH A 38 338 8 HOH HOH . F 6 HOH A 39 339 31 HOH HOH . F 6 HOH A 40 340 118 HOH HOH . F 6 HOH A 41 341 96 HOH HOH . F 6 HOH A 42 342 78 HOH HOH . F 6 HOH A 43 343 158 HOH HOH . F 6 HOH A 44 344 134 HOH HOH . F 6 HOH A 45 345 113 HOH HOH . F 6 HOH A 46 346 21 HOH HOH . F 6 HOH A 47 347 35 HOH HOH . F 6 HOH A 48 348 130 HOH HOH . F 6 HOH A 49 349 115 HOH HOH . F 6 HOH A 50 350 11 HOH HOH . F 6 HOH A 51 351 91 HOH HOH . F 6 HOH A 52 352 162 HOH HOH . F 6 HOH A 53 353 84 HOH HOH . F 6 HOH A 54 354 27 HOH HOH . F 6 HOH A 55 355 168 HOH HOH . F 6 HOH A 56 356 160 HOH HOH . F 6 HOH A 57 357 121 HOH HOH . F 6 HOH A 58 358 75 HOH HOH . F 6 HOH A 59 359 103 HOH HOH . F 6 HOH A 60 360 23 HOH HOH . F 6 HOH A 61 361 72 HOH HOH . F 6 HOH A 62 362 64 HOH HOH . F 6 HOH A 63 363 114 HOH HOH . F 6 HOH A 64 364 65 HOH HOH . F 6 HOH A 65 365 52 HOH HOH . F 6 HOH A 66 366 119 HOH HOH . F 6 HOH A 67 367 148 HOH HOH . F 6 HOH A 68 368 93 HOH HOH . F 6 HOH A 69 369 76 HOH HOH . F 6 HOH A 70 370 176 HOH HOH . F 6 HOH A 71 371 111 HOH HOH . F 6 HOH A 72 372 98 HOH HOH . F 6 HOH A 73 373 94 HOH HOH . F 6 HOH A 74 374 95 HOH HOH . F 6 HOH A 75 375 183 HOH HOH . F 6 HOH A 76 376 123 HOH HOH . F 6 HOH A 77 377 97 HOH HOH . F 6 HOH A 78 378 127 HOH HOH . F 6 HOH A 79 379 126 HOH HOH . F 6 HOH A 80 380 110 HOH HOH . F 6 HOH A 81 381 83 HOH HOH . F 6 HOH A 82 382 102 HOH HOH . F 6 HOH A 83 383 177 HOH HOH . F 6 HOH A 84 384 67 HOH HOH . F 6 HOH A 85 385 149 HOH HOH . F 6 HOH A 86 386 178 HOH HOH . F 6 HOH A 87 387 77 HOH HOH . F 6 HOH A 88 388 161 HOH HOH . G 6 HOH B 1 1901 129 HOH HOH . G 6 HOH B 2 1902 101 HOH HOH . G 6 HOH B 3 1903 92 HOH HOH . G 6 HOH B 4 1904 150 HOH HOH . G 6 HOH B 5 1905 1 HOH HOH . G 6 HOH B 6 1906 152 HOH HOH . G 6 HOH B 7 1907 143 HOH HOH . G 6 HOH B 8 1908 9 HOH HOH . G 6 HOH B 9 1909 12 HOH HOH . G 6 HOH B 10 1910 173 HOH HOH . G 6 HOH B 11 1911 38 HOH HOH . G 6 HOH B 12 1912 153 HOH HOH . G 6 HOH B 13 1913 163 HOH HOH . G 6 HOH B 14 1914 175 HOH HOH . G 6 HOH B 15 1915 70 HOH HOH . G 6 HOH B 16 1916 10 HOH HOH . G 6 HOH B 17 1917 85 HOH HOH . G 6 HOH B 18 1918 131 HOH HOH . G 6 HOH B 19 1919 48 HOH HOH . G 6 HOH B 20 1920 32 HOH HOH . G 6 HOH B 21 1921 71 HOH HOH . G 6 HOH B 22 1922 89 HOH HOH . G 6 HOH B 23 1923 90 HOH HOH . G 6 HOH B 24 1924 20 HOH HOH . G 6 HOH B 25 1925 154 HOH HOH . G 6 HOH B 26 1926 137 HOH HOH . G 6 HOH B 27 1927 50 HOH HOH . G 6 HOH B 28 1928 46 HOH HOH . G 6 HOH B 29 1929 82 HOH HOH . G 6 HOH B 30 1930 141 HOH HOH . G 6 HOH B 31 1931 13 HOH HOH . G 6 HOH B 32 1932 6 HOH HOH . G 6 HOH B 33 1933 15 HOH HOH . G 6 HOH B 34 1934 88 HOH HOH . G 6 HOH B 35 1935 37 HOH HOH . G 6 HOH B 36 1936 155 HOH HOH . G 6 HOH B 37 1937 19 HOH HOH . G 6 HOH B 38 1938 26 HOH HOH . G 6 HOH B 39 1939 47 HOH HOH . G 6 HOH B 40 1940 80 HOH HOH . G 6 HOH B 41 1941 79 HOH HOH . G 6 HOH B 42 1942 171 HOH HOH . G 6 HOH B 43 1943 99 HOH HOH . G 6 HOH B 44 1944 54 HOH HOH . G 6 HOH B 45 1945 24 HOH HOH . G 6 HOH B 46 1946 104 HOH HOH . G 6 HOH B 47 1947 120 HOH HOH . G 6 HOH B 48 1948 51 HOH HOH . G 6 HOH B 49 1949 159 HOH HOH . G 6 HOH B 50 1950 125 HOH HOH . G 6 HOH B 51 1951 174 HOH HOH . G 6 HOH B 52 1952 133 HOH HOH . G 6 HOH B 53 1953 184 HOH HOH . G 6 HOH B 54 1954 14 HOH HOH . G 6 HOH B 55 1955 63 HOH HOH . G 6 HOH B 56 1956 30 HOH HOH . G 6 HOH B 57 1957 151 HOH HOH . G 6 HOH B 58 1958 108 HOH HOH . G 6 HOH B 59 1959 147 HOH HOH . G 6 HOH B 60 1960 124 HOH HOH . G 6 HOH B 61 1961 179 HOH HOH . G 6 HOH B 62 1962 182 HOH HOH . G 6 HOH B 63 1963 81 HOH HOH . G 6 HOH B 64 1964 116 HOH HOH . G 6 HOH B 65 1965 29 HOH HOH . G 6 HOH B 66 1966 166 HOH HOH . G 6 HOH B 67 1967 55 HOH HOH . G 6 HOH B 68 1968 62 HOH HOH . G 6 HOH B 69 1969 36 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 5 _atom_site.Cartn_x 37.384 _atom_site.Cartn_y 42.789 _atom_site.Cartn_z 46.214 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 29.5 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 1801 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #