data_6L57
#
_model_server_result.job_id            4gm7aJnm6zWTcZYSAsB0qA 
_model_server_result.datetime_utc      '2024-12-05 10:16:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6l57 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":403}' 
#
_entry.id    6L57 
#
_exptl.entry_id    6L57 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6L57 
_cell.length_a            104.211 
_cell.length_b            104.211 
_cell.length_c            145.547 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6L57 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O ASP 233 A ASP 230 1_555 C MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.895 ? 
metalc ? metalc2 A OD1 ASP 233 A ASP 230 1_555 C MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? 
metalc ? metalc3 A OD2 ASP 237 A ASP 234 1_555 C MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.56 ? 
metalc ? metalc4 C MG MG . A MG 401 1_555 B OD2 ASP 218 B ASP 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? 
metalc ? metalc5 B OD1 ASN 81 B ASN 78 1_555 E MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.758 ? 
metalc ? metalc6 B O ARG 275 B ARG 272 1_555 E MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.577 ? 
metalc ? metalc7 E MG MG . B MG 402 1_555 H O HOH . B HOH 522 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.812 ? 
metalc ? metalc8 E MG MG . B MG 402 1_555 H O HOH . B HOH 554 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.745 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     6L57 
_atom_sites.fract_transf_matrix[1][1]    0.009596 
_atom_sites.fract_transf_matrix[1][2]    0.00554 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01108 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006871 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 MG A 1 401 2 MG MG . 
D 4 CIT B 1 401 1 CIT CIT . 
E 3 MG B 1 402 1 MG MG . 
F 5 ATP B 1 403 1 ATP ATP . 
G 6 HOH A 1 501 111 HOH HOH . 
G 6 HOH A 2 502 76 HOH HOH . 
G 6 HOH A 3 503 99 HOH HOH . 
G 6 HOH A 4 504 46 HOH HOH . 
G 6 HOH A 5 505 47 HOH HOH . 
G 6 HOH A 6 506 56 HOH HOH . 
G 6 HOH A 7 507 50 HOH HOH . 
G 6 HOH A 8 508 11 HOH HOH . 
G 6 HOH A 9 509 35 HOH HOH . 
G 6 HOH A 10 510 65 HOH HOH . 
G 6 HOH A 11 511 124 HOH HOH . 
G 6 HOH A 12 512 83 HOH HOH . 
G 6 HOH A 13 513 23 HOH HOH . 
G 6 HOH A 14 514 61 HOH HOH . 
G 6 HOH A 15 515 62 HOH HOH . 
G 6 HOH A 16 516 118 HOH HOH . 
G 6 HOH A 17 517 123 HOH HOH . 
G 6 HOH A 18 518 49 HOH HOH . 
G 6 HOH A 19 519 53 HOH HOH . 
G 6 HOH A 20 520 97 HOH HOH . 
G 6 HOH A 21 521 42 HOH HOH . 
G 6 HOH A 22 522 51 HOH HOH . 
G 6 HOH A 23 523 26 HOH HOH . 
G 6 HOH A 24 524 84 HOH HOH . 
G 6 HOH A 25 525 58 HOH HOH . 
G 6 HOH A 26 526 86 HOH HOH . 
G 6 HOH A 27 527 82 HOH HOH . 
G 6 HOH A 28 528 14 HOH HOH . 
G 6 HOH A 29 529 37 HOH HOH . 
G 6 HOH A 30 530 64 HOH HOH . 
G 6 HOH A 31 531 89 HOH HOH . 
G 6 HOH A 32 532 93 HOH HOH . 
G 6 HOH A 33 533 34 HOH HOH . 
G 6 HOH A 34 534 102 HOH HOH . 
G 6 HOH A 35 535 115 HOH HOH . 
G 6 HOH A 36 536 40 HOH HOH . 
G 6 HOH A 37 537 117 HOH HOH . 
G 6 HOH A 38 538 98 HOH HOH . 
G 6 HOH A 39 539 57 HOH HOH . 
G 6 HOH A 40 540 31 HOH HOH . 
G 6 HOH A 41 541 63 HOH HOH . 
G 6 HOH A 42 542 105 HOH HOH . 
G 6 HOH A 43 543 106 HOH HOH . 
G 6 HOH A 44 544 91 HOH HOH . 
G 6 HOH A 45 545 72 HOH HOH . 
G 6 HOH A 46 546 90 HOH HOH . 
H 6 HOH B 1 501 85 HOH HOH . 
H 6 HOH B 2 502 45 HOH HOH . 
H 6 HOH B 3 503 96 HOH HOH . 
H 6 HOH B 4 504 24 HOH HOH . 
H 6 HOH B 5 505 15 HOH HOH . 
H 6 HOH B 6 506 94 HOH HOH . 
H 6 HOH B 7 507 43 HOH HOH . 
H 6 HOH B 8 508 67 HOH HOH . 
H 6 HOH B 9 509 95 HOH HOH . 
H 6 HOH B 10 510 41 HOH HOH . 
H 6 HOH B 11 511 80 HOH HOH . 
H 6 HOH B 12 512 75 HOH HOH . 
H 6 HOH B 13 513 2 HOH HOH . 
H 6 HOH B 14 514 3 HOH HOH . 
H 6 HOH B 15 515 1 HOH HOH . 
H 6 HOH B 16 516 16 HOH HOH . 
H 6 HOH B 17 517 92 HOH HOH . 
H 6 HOH B 18 518 52 HOH HOH . 
H 6 HOH B 19 519 9 HOH HOH . 
H 6 HOH B 20 520 122 HOH HOH . 
H 6 HOH B 21 521 38 HOH HOH . 
H 6 HOH B 22 522 22 HOH HOH . 
H 6 HOH B 23 523 12 HOH HOH . 
H 6 HOH B 24 524 5 HOH HOH . 
H 6 HOH B 25 525 25 HOH HOH . 
H 6 HOH B 26 526 6 HOH HOH . 
H 6 HOH B 27 527 39 HOH HOH . 
H 6 HOH B 28 528 7 HOH HOH . 
H 6 HOH B 29 529 18 HOH HOH . 
H 6 HOH B 30 530 27 HOH HOH . 
H 6 HOH B 31 531 17 HOH HOH . 
H 6 HOH B 32 532 10 HOH HOH . 
H 6 HOH B 33 533 113 HOH HOH . 
H 6 HOH B 34 534 13 HOH HOH . 
H 6 HOH B 35 535 54 HOH HOH . 
H 6 HOH B 36 536 33 HOH HOH . 
H 6 HOH B 37 537 55 HOH HOH . 
H 6 HOH B 38 538 104 HOH HOH . 
H 6 HOH B 39 539 29 HOH HOH . 
H 6 HOH B 40 540 109 HOH HOH . 
H 6 HOH B 41 541 73 HOH HOH . 
H 6 HOH B 42 542 20 HOH HOH . 
H 6 HOH B 43 543 60 HOH HOH . 
H 6 HOH B 44 544 4 HOH HOH . 
H 6 HOH B 45 545 44 HOH HOH . 
H 6 HOH B 46 546 48 HOH HOH . 
H 6 HOH B 47 547 74 HOH HOH . 
H 6 HOH B 48 548 30 HOH HOH . 
H 6 HOH B 49 549 19 HOH HOH . 
H 6 HOH B 50 550 21 HOH HOH . 
H 6 HOH B 51 551 120 HOH HOH . 
H 6 HOH B 52 552 32 HOH HOH . 
H 6 HOH B 53 553 101 HOH HOH . 
H 6 HOH B 54 554 28 HOH HOH . 
H 6 HOH B 55 555 100 HOH HOH . 
H 6 HOH B 56 556 81 HOH HOH . 
H 6 HOH B 57 557 68 HOH HOH . 
H 6 HOH B 58 558 66 HOH HOH . 
H 6 HOH B 59 559 71 HOH HOH . 
H 6 HOH B 60 560 8 HOH HOH . 
H 6 HOH B 61 561 70 HOH HOH . 
H 6 HOH B 62 562 108 HOH HOH . 
H 6 HOH B 63 563 36 HOH HOH . 
H 6 HOH B 64 564 88 HOH HOH . 
H 6 HOH B 65 565 59 HOH HOH . 
H 6 HOH B 66 566 77 HOH HOH . 
H 6 HOH B 67 567 121 HOH HOH . 
H 6 HOH B 68 568 78 HOH HOH . 
H 6 HOH B 69 569 69 HOH HOH . 
H 6 HOH B 70 570 125 HOH HOH . 
H 6 HOH B 71 571 119 HOH HOH . 
H 6 HOH B 72 572 87 HOH HOH . 
H 6 HOH B 73 573 107 HOH HOH . 
H 6 HOH B 74 574 103 HOH HOH . 
H 6 HOH B 75 575 110 HOH HOH . 
H 6 HOH B 76 576 114 HOH HOH . 
H 6 HOH B 77 577 79 HOH HOH . 
H 6 HOH B 78 578 112 HOH HOH . 
H 6 HOH B 79 579 116 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . F 5 2.284 -38.961 -27.661 0.85 100.49 ? PG ATP 403 B 1 
HETATM 2 O O1G ATP . . . F 5 1.644 -37.976 -28.622 0.85 87.22 ? O1G ATP 403 B 1 
HETATM 3 O O2G ATP . . . F 5 2.558 -38.328 -26.309 0.85 86.36 ? O2G ATP 403 B 1 
HETATM 4 O O3G ATP . . . F 5 3.482 -39.719 -28.211 0.85 85.15 ? O3G ATP 403 B 1 
HETATM 5 P PB ATP . . . F 5 -0.405 -40.253 -27.56 0.85 77.55 ? PB ATP 403 B 1 
HETATM 6 O O1B ATP . . . F 5 -1.131 -39.104 -26.865 0.85 75.91 ? O1B ATP 403 B 1 
HETATM 7 O O2B ATP . . . F 5 -0.702 -40.594 -28.991 0.85 64.46 ? O2B ATP 403 B 1 
HETATM 8 O O3B ATP . . . F 5 1.216 -40.162 -27.348 0.85 84.05 ? O3B ATP 403 B 1 
HETATM 9 P PA ATP . . . F 5 -1.682 -41.991 -25.524 0.85 69.03 ? PA ATP 403 B 1 
HETATM 10 O O1A ATP . . . F 5 -3.076 -42.302 -26.014 0.85 61.35 ? O1A ATP 403 B 1 
HETATM 11 O O2A ATP . . . F 5 -1.459 -40.94 -24.46 0.85 66.47 ? O2A ATP 403 B 1 
HETATM 12 O O3A ATP . . . F 5 -0.717 -41.654 -26.794 0.85 74.48 ? O3A ATP 403 B 1 
HETATM 13 O O5' ATP . . . F 5 -0.964 -43.413 -25.177 0.85 62.34 ? O5' ATP 403 B 1 
HETATM 14 C C5' ATP . . . F 5 0.272 -43.546 -24.451 0.85 58.76 ? C5' ATP 403 B 1 
HETATM 15 C C4' ATP . . . F 5 1.405 -44.238 -25.242 0.85 59.25 ? C4' ATP 403 B 1 
HETATM 16 O O4' ATP . . . F 5 1.137 -45.602 -25.615 0.85 58.74 ? O4' ATP 403 B 1 
HETATM 17 C C3' ATP . . . F 5 1.769 -43.526 -26.54 0.85 63.08 ? C3' ATP 403 B 1 
HETATM 18 O O3' ATP . . . F 5 3.196 -43.476 -26.629 0.85 59.94 ? O3' ATP 403 B 1 
HETATM 19 C C2' ATP . . . F 5 1.24 -44.421 -27.647 0.85 62.7 ? C2' ATP 403 B 1 
HETATM 20 O O2' ATP . . . F 5 1.996 -44.23 -28.848 0.85 57.31 ? O2' ATP 403 B 1 
HETATM 21 C C1' ATP . . . F 5 1.382 -45.808 -27.024 0.85 57.24 ? C1' ATP 403 B 1 
HETATM 22 N N9 ATP . . . F 5 0.449 -46.834 -27.581 0.85 51.41 ? N9 ATP 403 B 1 
HETATM 23 C C8 ATP . . . F 5 -0.847 -46.988 -27.248 0.85 50.78 ? C8 ATP 403 B 1 
HETATM 24 N N7 ATP . . . F 5 -1.417 -48.038 -27.903 0.85 45.91 ? N7 ATP 403 B 1 
HETATM 25 C C5 ATP . . . F 5 -0.471 -48.596 -28.675 0.85 48.56 ? C5 ATP 403 B 1 
HETATM 26 C C6 ATP . . . F 5 -0.391 -49.73 -29.651 0.85 45.86 ? C6 ATP 403 B 1 
HETATM 27 N N6 ATP . . . F 5 -1.449 -50.517 -29.943 0.85 41.77 ? N6 ATP 403 B 1 
HETATM 28 N N1 ATP . . . F 5 0.797 -49.966 -30.244 0.85 46.31 ? N1 ATP 403 B 1 
HETATM 29 C C2 ATP . . . F 5 1.869 -49.197 -29.986 0.85 49.81 ? C2 ATP 403 B 1 
HETATM 30 N N3 ATP . . . F 5 1.871 -48.158 -29.128 0.85 51.71 ? N3 ATP 403 B 1 
HETATM 31 C C4 ATP . . . F 5 0.753 -47.802 -28.454 0.85 48.85 ? C4 ATP 403 B 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           336 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           31 
#