data_6L5B # _model_server_result.job_id IhRfwIMp9FCxRlCbBMqixw _model_server_result.datetime_utc '2025-08-03 19:31:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6l5b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 6L5B # _exptl.entry_id 6L5B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 351.64 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'IRON/SULFUR CLUSTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.305 _cell.angle_gamma 90 _cell.entry_id 6L5B _cell.length_a 38.736 _cell.length_b 50.923 _cell.length_c 40.285 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6L5B _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 27 A CYS 24 1_555 B FE2 SF4 . A SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? metalc ? metalc2 A SG CYS 30 A CYS 27 1_555 B FE4 SF4 . A SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? metalc ? metalc3 A ND1 HIS 98 A HIS 95 1_555 B FE3 SF4 . A SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? metalc ? metalc4 A SG CYS 123 A CYS 120 1_555 B FE1 SF4 . A SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? # _chem_comp.formula 'Fe4 S4' _chem_comp.formula_weight 351.64 _chem_comp.id SF4 _chem_comp.mon_nstd_flag . _chem_comp.name 'IRON/SULFUR CLUSTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE1 S2 SF4 sing 290 n n FE1 S3 SF4 sing 291 n n FE1 S4 SF4 sing 292 n n FE2 S1 SF4 sing 293 n n FE2 S3 SF4 sing 294 n n FE2 S4 SF4 sing 295 n n FE3 S1 SF4 sing 296 n n FE3 S2 SF4 sing 297 n n FE3 S4 SF4 sing 298 n n FE4 S1 SF4 sing 299 n n FE4 S2 SF4 sing 300 n n FE4 S3 SF4 sing 301 n n # _atom_sites.entry_id 6L5B _atom_sites.fract_transf_matrix[1][1] 0.025816 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000588 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019637 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02483 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SF4 A 1 301 1 SF4 SF4 . C 3 HOH A 1 401 9 HOH HOH . C 3 HOH A 2 402 105 HOH HOH . C 3 HOH A 3 403 92 HOH HOH . C 3 HOH A 4 404 102 HOH HOH . C 3 HOH A 5 405 95 HOH HOH . C 3 HOH A 6 406 53 HOH HOH . C 3 HOH A 7 407 106 HOH HOH . C 3 HOH A 8 408 70 HOH HOH . C 3 HOH A 9 409 66 HOH HOH . C 3 HOH A 10 410 101 HOH HOH . C 3 HOH A 11 411 13 HOH HOH . C 3 HOH A 12 412 109 HOH HOH . C 3 HOH A 13 413 89 HOH HOH . C 3 HOH A 14 414 52 HOH HOH . C 3 HOH A 15 415 7 HOH HOH . C 3 HOH A 16 416 3 HOH HOH . C 3 HOH A 17 417 8 HOH HOH . C 3 HOH A 18 418 18 HOH HOH . C 3 HOH A 19 419 93 HOH HOH . C 3 HOH A 20 420 23 HOH HOH . C 3 HOH A 21 421 35 HOH HOH . C 3 HOH A 22 422 1 HOH HOH . C 3 HOH A 23 423 99 HOH HOH . C 3 HOH A 24 424 28 HOH HOH . C 3 HOH A 25 425 74 HOH HOH . C 3 HOH A 26 426 79 HOH HOH . C 3 HOH A 27 427 100 HOH HOH . C 3 HOH A 28 428 5 HOH HOH . C 3 HOH A 29 429 59 HOH HOH . C 3 HOH A 30 430 46 HOH HOH . C 3 HOH A 31 431 45 HOH HOH . C 3 HOH A 32 432 61 HOH HOH . C 3 HOH A 33 433 73 HOH HOH . C 3 HOH A 34 434 68 HOH HOH . C 3 HOH A 35 435 12 HOH HOH . C 3 HOH A 36 436 40 HOH HOH . C 3 HOH A 37 437 16 HOH HOH . C 3 HOH A 38 438 17 HOH HOH . C 3 HOH A 39 439 26 HOH HOH . C 3 HOH A 40 440 27 HOH HOH . C 3 HOH A 41 441 2 HOH HOH . C 3 HOH A 42 442 15 HOH HOH . C 3 HOH A 43 443 19 HOH HOH . C 3 HOH A 44 444 24 HOH HOH . C 3 HOH A 45 445 80 HOH HOH . C 3 HOH A 46 446 51 HOH HOH . C 3 HOH A 47 447 43 HOH HOH . C 3 HOH A 48 448 31 HOH HOH . C 3 HOH A 49 449 57 HOH HOH . C 3 HOH A 50 450 25 HOH HOH . C 3 HOH A 51 451 76 HOH HOH . C 3 HOH A 52 452 6 HOH HOH . C 3 HOH A 53 453 71 HOH HOH . C 3 HOH A 54 454 10 HOH HOH . C 3 HOH A 55 455 22 HOH HOH . C 3 HOH A 56 456 34 HOH HOH . C 3 HOH A 57 457 4 HOH HOH . C 3 HOH A 58 458 39 HOH HOH . C 3 HOH A 59 459 108 HOH HOH . C 3 HOH A 60 460 11 HOH HOH . C 3 HOH A 61 461 78 HOH HOH . C 3 HOH A 62 462 30 HOH HOH . C 3 HOH A 63 463 48 HOH HOH . C 3 HOH A 64 464 37 HOH HOH . C 3 HOH A 65 465 33 HOH HOH . C 3 HOH A 66 466 84 HOH HOH . C 3 HOH A 67 467 36 HOH HOH . C 3 HOH A 68 468 55 HOH HOH . C 3 HOH A 69 469 32 HOH HOH . C 3 HOH A 70 470 38 HOH HOH . C 3 HOH A 71 471 42 HOH HOH . C 3 HOH A 72 472 107 HOH HOH . C 3 HOH A 73 473 64 HOH HOH . C 3 HOH A 74 474 82 HOH HOH . C 3 HOH A 75 475 49 HOH HOH . C 3 HOH A 76 476 44 HOH HOH . C 3 HOH A 77 477 63 HOH HOH . C 3 HOH A 78 478 67 HOH HOH . C 3 HOH A 79 479 81 HOH HOH . C 3 HOH A 80 480 20 HOH HOH . C 3 HOH A 81 481 21 HOH HOH . C 3 HOH A 82 482 88 HOH HOH . C 3 HOH A 83 483 98 HOH HOH . C 3 HOH A 84 484 54 HOH HOH . C 3 HOH A 85 485 62 HOH HOH . C 3 HOH A 86 486 69 HOH HOH . C 3 HOH A 87 487 65 HOH HOH . C 3 HOH A 88 488 14 HOH HOH . C 3 HOH A 89 489 90 HOH HOH . C 3 HOH A 90 490 47 HOH HOH . C 3 HOH A 91 491 83 HOH HOH . C 3 HOH A 92 492 85 HOH HOH . C 3 HOH A 93 493 41 HOH HOH . C 3 HOH A 94 494 77 HOH HOH . C 3 HOH A 95 495 75 HOH HOH . C 3 HOH A 96 496 56 HOH HOH . C 3 HOH A 97 497 97 HOH HOH . C 3 HOH A 98 498 29 HOH HOH . C 3 HOH A 99 499 91 HOH HOH . C 3 HOH A 100 500 50 HOH HOH . C 3 HOH A 101 501 104 HOH HOH . C 3 HOH A 102 502 96 HOH HOH . C 3 HOH A 103 503 86 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE1 SF4 . . . B 2 15.791 -7.899 12.407 1 12.29 ? FE1 SF4 301 A 1 HETATM 2 FE FE2 SF4 . . . B 2 18.124 -9.048 13.735 1 15.9 ? FE2 SF4 301 A 1 HETATM 3 FE FE3 SF4 . . . B 2 18.223 -8.434 10.882 1 17.5 ? FE3 SF4 301 A 1 HETATM 4 FE FE4 SF4 . . . B 2 16.629 -10.678 11.82 1 14.78 ? FE4 SF4 301 A 1 HETATM 5 S S1 SF4 . . . B 2 18.779 -10.246 12.024 1 20.33 ? S1 SF4 301 A 1 HETATM 6 S S2 SF4 . . . B 2 16.128 -8.969 10.516 1 16.14 ? S2 SF4 301 A 1 HETATM 7 S S3 SF4 . . . B 2 16.027 -9.682 13.677 1 16.33 ? S3 SF4 301 A 1 HETATM 8 S S4 SF4 . . . B 2 17.847 -7.166 12.645 1 18.72 ? S4 SF4 301 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 8 #