data_6L5M
#
_model_server_result.job_id            xfoX1W49eyZ5QzPIZAVFZA 
_model_server_result.datetime_utc      '2025-07-01 19:00:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6l5m 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":601}' 
#
_entry.id    6L5M 
#
_exptl.entry_id    6L5M 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              347.221 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ADENOSINE MONOPHOSPHATE' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90.79 
_cell.angle_gamma         90 
_cell.entry_id            6L5M 
_cell.length_a            36.39 
_cell.length_b            219.07 
_cell.length_c            126.39 
_cell.Z_PDB               10 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6L5M 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
PISA monomeric 1 author_and_software_defined_assembly 5 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,F,K 1 1 
B,G,L 2 1 
C,H,M 3 1 
D,I,N 4 1 
E,J,O 5 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
#
_chem_comp.formula           'C10 H14 N5 O7 P' 
_chem_comp.formula_weight    347.221 
_chem_comp.id                AMP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ADENOSINE MONOPHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P AMP doub 13 n n 
P O2P AMP sing 14 n n 
P O3P AMP sing 15 n n 
P O5' AMP sing 16 n n 
O2P HOP2 AMP sing 17 n n 
O3P HOP3 AMP sing 18 n n 
O5' C5' AMP sing 19 n n 
C5' C4' AMP sing 20 n n 
C5' "H5'1" AMP sing 21 n n 
C5' "H5'2" AMP sing 22 n n 
C4' O4' AMP sing 23 n n 
C4' C3' AMP sing 24 n n 
C4' H4' AMP sing 25 n n 
O4' C1' AMP sing 26 n n 
C3' O3' AMP sing 27 n n 
C3' C2' AMP sing 28 n n 
C3' H3' AMP sing 29 n n 
O3' HO3' AMP sing 30 n n 
C2' O2' AMP sing 31 n n 
C2' C1' AMP sing 32 n n 
C2' H2' AMP sing 33 n n 
O2' HO2' AMP sing 34 n n 
C1' N9 AMP sing 35 n n 
C1' H1' AMP sing 36 n n 
N9 C8 AMP sing 37 n y 
N9 C4 AMP sing 38 n y 
C8 N7 AMP doub 39 n y 
C8 H8 AMP sing 40 n n 
N7 C5 AMP sing 41 n y 
C5 C6 AMP sing 42 n y 
C5 C4 AMP doub 43 n y 
C6 N6 AMP sing 44 n n 
C6 N1 AMP doub 45 n y 
N6 HN61 AMP sing 46 n n 
N6 HN62 AMP sing 47 n n 
N1 C2 AMP sing 48 n y 
C2 N3 AMP doub 49 n y 
C2 H2 AMP sing 50 n n 
N3 C4 AMP sing 51 n y 
#
_atom_sites.entry_id                     6L5M 
_atom_sites.fract_transf_matrix[1][1]    0.02748 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000379 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004565 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007913 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 2 AMP A 1 601 601 AMP AMP . 
G 2 AMP B 1 601 601 AMP AMP . 
H 2 AMP C 1 601 601 AMP AMP . 
I 2 AMP D 1 601 601 AMP AMP . 
J 2 AMP E 1 601 601 AMP AMP . 
K 3 HOH A 1 701 702 HOH HOH . 
K 3 HOH A 2 702 703 HOH HOH . 
K 3 HOH A 3 703 707 HOH HOH . 
K 3 HOH A 4 704 708 HOH HOH . 
K 3 HOH A 5 705 701 HOH HOH . 
K 3 HOH A 6 706 705 HOH HOH . 
K 3 HOH A 7 707 706 HOH HOH . 
K 3 HOH A 8 708 709 HOH HOH . 
K 3 HOH A 9 709 715 HOH HOH . 
K 3 HOH A 10 710 704 HOH HOH . 
K 3 HOH A 11 711 713 HOH HOH . 
K 3 HOH A 12 712 710 HOH HOH . 
K 3 HOH A 13 713 714 HOH HOH . 
K 3 HOH A 14 714 711 HOH HOH . 
K 3 HOH A 15 715 712 HOH HOH . 
L 3 HOH B 1 701 702 HOH HOH . 
L 3 HOH B 2 702 704 HOH HOH . 
L 3 HOH B 3 703 708 HOH HOH . 
L 3 HOH B 4 704 709 HOH HOH . 
L 3 HOH B 5 705 705 HOH HOH . 
L 3 HOH B 6 706 703 HOH HOH . 
L 3 HOH B 7 707 707 HOH HOH . 
L 3 HOH B 8 708 701 HOH HOH . 
L 3 HOH B 9 709 711 HOH HOH . 
L 3 HOH B 10 710 710 HOH HOH . 
L 3 HOH B 11 711 712 HOH HOH . 
L 3 HOH B 12 712 706 HOH HOH . 
L 3 HOH B 13 713 713 HOH HOH . 
M 3 HOH C 1 701 705 HOH HOH . 
M 3 HOH C 2 702 707 HOH HOH . 
M 3 HOH C 3 703 703 HOH HOH . 
M 3 HOH C 4 704 702 HOH HOH . 
M 3 HOH C 5 705 704 HOH HOH . 
M 3 HOH C 6 706 708 HOH HOH . 
M 3 HOH C 7 707 710 HOH HOH . 
M 3 HOH C 8 708 706 HOH HOH . 
M 3 HOH C 9 709 711 HOH HOH . 
M 3 HOH C 10 710 709 HOH HOH . 
M 3 HOH C 11 711 701 HOH HOH . 
N 3 HOH D 1 701 705 HOH HOH . 
N 3 HOH D 2 702 701 HOH HOH . 
N 3 HOH D 3 703 703 HOH HOH . 
N 3 HOH D 4 704 702 HOH HOH . 
N 3 HOH D 5 705 707 HOH HOH . 
N 3 HOH D 6 706 706 HOH HOH . 
N 3 HOH D 7 707 708 HOH HOH . 
N 3 HOH D 8 708 704 HOH HOH . 
N 3 HOH D 9 709 709 HOH HOH . 
N 3 HOH D 10 710 710 HOH HOH . 
O 3 HOH E 1 701 702 HOH HOH . 
O 3 HOH E 2 702 705 HOH HOH . 
O 3 HOH E 3 703 704 HOH HOH . 
O 3 HOH E 4 704 703 HOH HOH . 
O 3 HOH E 5 705 707 HOH HOH . 
O 3 HOH E 6 706 709 HOH HOH . 
O 3 HOH E 7 707 708 HOH HOH . 
O 3 HOH E 8 708 706 HOH HOH . 
O 3 HOH E 9 709 701 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P AMP . . . G 2 -5.398 18.794 -27.236 1 30.05 ? P AMP 601 B 1 
HETATM 2 O O1P AMP . . . G 2 -5.776 19.868 -28.271 1 26.33 ? O1P AMP 601 B 1 
HETATM 3 O O2P AMP . . . G 2 -4.384 19.331 -26.202 1 29.71 ? O2P AMP 601 B 1 
HETATM 4 O O3P AMP . . . G 2 -6.572 18.224 -26.44 1 30.41 ? O3P AMP 601 B 1 
HETATM 5 O O5' AMP . . . G 2 -4.631 17.543 -27.981 1 30.48 ? O5' AMP 601 B 1 
HETATM 6 C C5' AMP . . . G 2 -5.298 16.634 -28.878 1 28.12 ? C5' AMP 601 B 1 
HETATM 7 C C4' AMP . . . G 2 -4.73 15.238 -28.759 1 26.33 ? C4' AMP 601 B 1 
HETATM 8 O O4' AMP . . . G 2 -3.393 15.196 -29.305 1 26.57 ? O4' AMP 601 B 1 
HETATM 9 C C3' AMP . . . G 2 -4.66 14.625 -27.358 1 24.05 ? C3' AMP 601 B 1 
HETATM 10 O O3' AMP . . . G 2 -5.164 13.298 -27.36 1 23.3 ? O3' AMP 601 B 1 
HETATM 11 C C2' AMP . . . G 2 -3.165 14.662 -27.023 1 24.49 ? C2' AMP 601 B 1 
HETATM 12 O O2' AMP . . . G 2 -2.789 13.638 -26.101 1 21.44 ? O2' AMP 601 B 1 
HETATM 13 C C1' AMP . . . G 2 -2.53 14.516 -28.414 1 23.3 ? C1' AMP 601 B 1 
HETATM 14 N N9 AMP . . . G 2 -1.196 15.105 -28.543 1 16.9 ? N9 AMP 601 B 1 
HETATM 15 C C8 AMP . . . G 2 -0.837 16.389 -28.224 1 14.34 ? C8 AMP 601 B 1 
HETATM 16 N N7 AMP . . . G 2 0.423 16.666 -28.459 1 9.98 ? N7 AMP 601 B 1 
HETATM 17 C C5 AMP . . . G 2 0.929 15.484 -28.977 1 7.21 ? C5 AMP 601 B 1 
HETATM 18 C C6 AMP . . . G 2 2.203 15.13 -29.463 1 5.48 ? C6 AMP 601 B 1 
HETATM 19 N N6 AMP . . . G 2 3.229 15.978 -29.528 1 4.89 ? N6 AMP 601 B 1 
HETATM 20 N N1 AMP . . . G 2 2.374 13.872 -29.935 1 7.02 ? N1 AMP 601 B 1 
HETATM 21 C C2 AMP . . . G 2 1.332 13.035 -29.922 1 9.19 ? C2 AMP 601 B 1 
HETATM 22 N N3 AMP . . . G 2 0.082 13.261 -29.498 1 12.41 ? N3 AMP 601 B 1 
HETATM 23 C C4 AMP . . . G 2 -0.056 14.512 -29.033 1 11.3 ? C4 AMP 601 B 1 
#
_model_server_stats.io_time_ms              63 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           295 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           23 
#