data_6L5V # _model_server_result.job_id uO5ANsR3HR-aB5lo041QYg _model_server_result.datetime_utc '2024-12-02 07:19:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6l5v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 6L5V # _exptl.entry_id 6L5V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6L5V _cell.length_a 53.492 _cell.length_b 53.492 _cell.length_c 192.728 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6L5V _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_645 y+1,x-1,-z 0 1 0 1 0 0 0 0 -1 53.492 -53.492 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 87 A HIS 87 1_555 C FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc2 C FE HEM . A HEM 201 1_555 D C CMO . A CMO 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.729 ? metalc ? metalc3 B NE2 HIS 92 B HIS 92 1_555 E FE HEM . B HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc4 E FE HEM . B HEM 201 1_555 F C CMO . B CMO 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.749 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 130 n n CHA C4D HEM doub 131 n n CHA HHA HEM sing 132 n n CHB C4A HEM sing 133 n n CHB C1B HEM doub 134 n n CHB HHB HEM sing 135 n n CHC C4B HEM sing 136 n n CHC C1C HEM doub 137 n n CHC HHC HEM sing 138 n n CHD C4C HEM doub 139 n n CHD C1D HEM sing 140 n n CHD HHD HEM sing 141 n n C1A C2A HEM doub 142 n y C1A NA HEM sing 143 n y C2A C3A HEM sing 144 n y C2A CAA HEM sing 145 n n C3A C4A HEM doub 146 n y C3A CMA HEM sing 147 n n C4A NA HEM sing 148 n y CMA HMA HEM sing 149 n n CMA HMAA HEM sing 150 n n CMA HMAB HEM sing 151 n n CAA CBA HEM sing 152 n n CAA HAA HEM sing 153 n n CAA HAAA HEM sing 154 n n CBA CGA HEM sing 155 n n CBA HBA HEM sing 156 n n CBA HBAA HEM sing 157 n n CGA O1A HEM doub 158 n n CGA O2A HEM sing 159 n n C1B C2B HEM sing 160 n n C1B NB HEM sing 161 n n C2B C3B HEM doub 162 n n C2B CMB HEM sing 163 n n C3B C4B HEM sing 164 n n C3B CAB HEM sing 165 n n C4B NB HEM doub 166 n n CMB HMB HEM sing 167 n n CMB HMBA HEM sing 168 n n CMB HMBB HEM sing 169 n n CAB CBB HEM doub 170 n n CAB HAB HEM sing 171 n n CBB HBB HEM sing 172 n n CBB HBBA HEM sing 173 n n C1C C2C HEM sing 174 n y C1C NC HEM sing 175 n y C2C C3C HEM doub 176 n y C2C CMC HEM sing 177 n n C3C C4C HEM sing 178 n y C3C CAC HEM sing 179 n n C4C NC HEM sing 180 n y CMC HMC HEM sing 181 n n CMC HMCA HEM sing 182 n n CMC HMCB HEM sing 183 n n CAC CBC HEM doub 184 n n CAC HAC HEM sing 185 n n CBC HBC HEM sing 186 n n CBC HBCA HEM sing 187 n n C1D C2D HEM sing 188 n n C1D ND HEM doub 189 n n C2D C3D HEM doub 190 n n C2D CMD HEM sing 191 n n C3D C4D HEM sing 192 n n C3D CAD HEM sing 193 n n C4D ND HEM sing 194 n n CMD HMD HEM sing 195 n n CMD HMDA HEM sing 196 n n CMD HMDB HEM sing 197 n n CAD CBD HEM sing 198 n n CAD HAD HEM sing 199 n n CAD HADA HEM sing 200 n n CBD CGD HEM sing 201 n n CBD HBD HEM sing 202 n n CBD HBDA HEM sing 203 n n CGD O1D HEM doub 204 n n CGD O2D HEM sing 205 n n O2A H2A HEM sing 206 n n O2D H2D HEM sing 207 n n FE NA HEM sing 208 n n FE NB HEM sing 209 n n FE NC HEM sing 210 n n FE ND HEM sing 211 n n # _atom_sites.entry_id 6L5V _atom_sites.fract_transf_matrix[1][1] 0.018694 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018694 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005189 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HEM A 1 201 142 HEM HEM . D 4 CMO A 1 202 143 CMO CMO . E 3 HEM B 1 201 147 HEM HEM . F 4 CMO B 1 202 148 CMO CMO . G 5 HOH A 1 301 49 HOH HOH . G 5 HOH A 2 302 111 HOH HOH . G 5 HOH A 3 303 72 HOH HOH . G 5 HOH A 4 304 27 HOH HOH . G 5 HOH A 5 305 94 HOH HOH . G 5 HOH A 6 306 74 HOH HOH . G 5 HOH A 7 307 1 HOH HOH . G 5 HOH A 8 308 115 HOH HOH . G 5 HOH A 9 309 117 HOH HOH . G 5 HOH A 10 310 104 HOH HOH . G 5 HOH A 11 311 4 HOH HOH . G 5 HOH A 12 312 7 HOH HOH . G 5 HOH A 13 313 82 HOH HOH . G 5 HOH A 14 314 83 HOH HOH . G 5 HOH A 15 315 40 HOH HOH . G 5 HOH A 16 316 45 HOH HOH . G 5 HOH A 17 317 86 HOH HOH . G 5 HOH A 18 318 108 HOH HOH . G 5 HOH A 19 319 52 HOH HOH . G 5 HOH A 20 320 62 HOH HOH . G 5 HOH A 21 321 107 HOH HOH . G 5 HOH A 22 322 33 HOH HOH . G 5 HOH A 23 323 17 HOH HOH . G 5 HOH A 24 324 2 HOH HOH . G 5 HOH A 25 325 50 HOH HOH . G 5 HOH A 26 326 5 HOH HOH . G 5 HOH A 27 327 15 HOH HOH . G 5 HOH A 28 328 58 HOH HOH . G 5 HOH A 29 329 65 HOH HOH . G 5 HOH A 30 330 63 HOH HOH . G 5 HOH A 31 331 88 HOH HOH . G 5 HOH A 32 332 120 HOH HOH . G 5 HOH A 33 333 14 HOH HOH . G 5 HOH A 34 334 75 HOH HOH . G 5 HOH A 35 335 61 HOH HOH . G 5 HOH A 36 336 6 HOH HOH . G 5 HOH A 37 337 3 HOH HOH . G 5 HOH A 38 338 54 HOH HOH . G 5 HOH A 39 339 99 HOH HOH . G 5 HOH A 40 340 51 HOH HOH . G 5 HOH A 41 341 64 HOH HOH . G 5 HOH A 42 342 35 HOH HOH . G 5 HOH A 43 343 121 HOH HOH . G 5 HOH A 44 344 67 HOH HOH . G 5 HOH A 45 345 36 HOH HOH . G 5 HOH A 46 346 77 HOH HOH . G 5 HOH A 47 347 47 HOH HOH . G 5 HOH A 48 348 73 HOH HOH . G 5 HOH A 49 349 37 HOH HOH . G 5 HOH A 50 350 95 HOH HOH . G 5 HOH A 51 351 122 HOH HOH . G 5 HOH A 52 352 93 HOH HOH . G 5 HOH A 53 353 19 HOH HOH . G 5 HOH A 54 354 9 HOH HOH . G 5 HOH A 55 355 20 HOH HOH . G 5 HOH A 56 356 55 HOH HOH . G 5 HOH A 57 357 110 HOH HOH . G 5 HOH A 58 358 69 HOH HOH . G 5 HOH A 59 359 10 HOH HOH . G 5 HOH A 60 360 106 HOH HOH . G 5 HOH A 61 361 8 HOH HOH . G 5 HOH A 62 362 29 HOH HOH . G 5 HOH A 63 363 81 HOH HOH . G 5 HOH A 64 364 56 HOH HOH . H 5 HOH B 1 301 18 HOH HOH . H 5 HOH B 2 302 60 HOH HOH . H 5 HOH B 3 303 98 HOH HOH . H 5 HOH B 4 304 119 HOH HOH . H 5 HOH B 5 305 96 HOH HOH . H 5 HOH B 6 306 91 HOH HOH . H 5 HOH B 7 307 53 HOH HOH . H 5 HOH B 8 308 114 HOH HOH . H 5 HOH B 9 309 92 HOH HOH . H 5 HOH B 10 310 25 HOH HOH . H 5 HOH B 11 311 97 HOH HOH . H 5 HOH B 12 312 79 HOH HOH . H 5 HOH B 13 313 70 HOH HOH . H 5 HOH B 14 314 116 HOH HOH . H 5 HOH B 15 315 89 HOH HOH . H 5 HOH B 16 316 16 HOH HOH . H 5 HOH B 17 317 28 HOH HOH . H 5 HOH B 18 318 13 HOH HOH . H 5 HOH B 19 319 26 HOH HOH . H 5 HOH B 20 320 24 HOH HOH . H 5 HOH B 21 321 11 HOH HOH . H 5 HOH B 22 322 57 HOH HOH . H 5 HOH B 23 323 38 HOH HOH . H 5 HOH B 24 324 101 HOH HOH . H 5 HOH B 25 325 59 HOH HOH . H 5 HOH B 26 326 44 HOH HOH . H 5 HOH B 27 327 112 HOH HOH . H 5 HOH B 28 328 12 HOH HOH . H 5 HOH B 29 329 31 HOH HOH . H 5 HOH B 30 330 103 HOH HOH . H 5 HOH B 31 331 21 HOH HOH . H 5 HOH B 32 332 68 HOH HOH . H 5 HOH B 33 333 100 HOH HOH . H 5 HOH B 34 334 87 HOH HOH . H 5 HOH B 35 335 71 HOH HOH . H 5 HOH B 36 336 32 HOH HOH . H 5 HOH B 37 337 43 HOH HOH . H 5 HOH B 38 338 42 HOH HOH . H 5 HOH B 39 339 102 HOH HOH . H 5 HOH B 40 340 48 HOH HOH . H 5 HOH B 41 341 76 HOH HOH . H 5 HOH B 42 342 46 HOH HOH . H 5 HOH B 43 343 105 HOH HOH . H 5 HOH B 44 344 39 HOH HOH . H 5 HOH B 45 345 30 HOH HOH . H 5 HOH B 46 346 113 HOH HOH . H 5 HOH B 47 347 80 HOH HOH . H 5 HOH B 48 348 90 HOH HOH . H 5 HOH B 49 349 23 HOH HOH . H 5 HOH B 50 350 85 HOH HOH . H 5 HOH B 51 351 109 HOH HOH . H 5 HOH B 52 352 78 HOH HOH . H 5 HOH B 53 353 34 HOH HOH . H 5 HOH B 54 354 22 HOH HOH . H 5 HOH B 55 355 41 HOH HOH . H 5 HOH B 56 356 66 HOH HOH . H 5 HOH B 57 357 118 HOH HOH . H 5 HOH B 58 358 84 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . C 3 42.989 -25.259 17.21 1 18.5 ? CHA HEM 201 A 1 HETATM 2 C CHB HEM . . . C 3 40.882 -20.925 16.342 1 16.47 ? CHB HEM 201 A 1 HETATM 3 C CHC HEM . . . C 3 37.698 -23.134 13.297 1 15.22 ? CHC HEM 201 A 1 HETATM 4 C CHD HEM . . . C 3 39.458 -27.597 14.661 1 17.4 ? CHD HEM 201 A 1 HETATM 5 C C1A HEM . . . C 3 42.678 -23.911 17.229 1 16.29 ? C1A HEM 201 A 1 HETATM 6 C C2A HEM . . . C 3 43.36 -22.893 18.011 1 18.08 ? C2A HEM 201 A 1 HETATM 7 C C3A HEM . . . C 3 42.778 -21.707 17.771 1 17.78 ? C3A HEM 201 A 1 HETATM 8 C C4A HEM . . . C 3 41.696 -21.924 16.834 1 14.98 ? C4A HEM 201 A 1 HETATM 9 C CMA HEM . . . C 3 43.14 -20.325 18.361 1 18.22 ? CMA HEM 201 A 1 HETATM 10 C CAA HEM . . . C 3 44.564 -23.173 18.939 1 19.4 ? CAA HEM 201 A 1 HETATM 11 C CBA HEM . . . C 3 45.84 -22.888 18.157 1 25.3 ? CBA HEM 201 A 1 HETATM 12 C CGA HEM . . . C 3 47.036 -23.329 18.955 1 46.19 ? CGA HEM 201 A 1 HETATM 13 O O1A HEM . . . C 3 48.161 -23.295 18.396 1 49.53 ? O1A HEM 201 A 1 HETATM 14 O O2A HEM . . . C 3 46.858 -23.719 20.137 1 47.16 ? O2A HEM 201 A 1 HETATM 15 C C1B HEM . . . C 3 39.862 -21.179 15.432 1 15.49 ? C1B HEM 201 A 1 HETATM 16 C C2B HEM . . . C 3 38.995 -20.165 14.875 1 14.88 ? C2B HEM 201 A 1 HETATM 17 C C3B HEM . . . C 3 38.134 -20.764 14.033 1 14.15 ? C3B HEM 201 A 1 HETATM 18 C C4B HEM . . . C 3 38.411 -22.19 14.042 1 13.83 ? C4B HEM 201 A 1 HETATM 19 C CMB HEM . . . C 3 39.134 -18.671 15.205 1 16.42 ? CMB HEM 201 A 1 HETATM 20 C CAB HEM . . . C 3 37.004 -20.176 13.186 1 15.93 ? CAB HEM 201 A 1 HETATM 21 C CBB HEM . . . C 3 36.333 -19.076 13.52 1 19.82 ? CBB HEM 201 A 1 HETATM 22 C C1C HEM . . . C 3 37.878 -24.518 13.482 1 14.9 ? C1C HEM 201 A 1 HETATM 23 C C2C HEM . . . C 3 37.007 -25.55 12.951 1 13.13 ? C2C HEM 201 A 1 HETATM 24 C C3C HEM . . . C 3 37.503 -26.76 13.32 1 14.26 ? C3C HEM 201 A 1 HETATM 25 C C4C HEM . . . C 3 38.687 -26.569 14.113 1 12.16 ? C4C HEM 201 A 1 HETATM 26 C CMC HEM . . . C 3 35.776 -25.224 12.093 1 17.44 ? CMC HEM 201 A 1 HETATM 27 C CAC HEM . . . C 3 36.958 -28.177 13.052 1 15.11 ? CAC HEM 201 A 1 HETATM 28 C CBC HEM . . . C 3 35.652 -28.457 12.965 1 17.13 ? CBC HEM 201 A 1 HETATM 29 C C1D HEM . . . C 3 40.56 -27.307 15.466 1 16.74 ? C1D HEM 201 A 1 HETATM 30 C C2D HEM . . . C 3 41.402 -28.309 16.077 1 19.55 ? C2D HEM 201 A 1 HETATM 31 C C3D HEM . . . C 3 42.377 -27.705 16.773 1 18.32 ? C3D HEM 201 A 1 HETATM 32 C C4D HEM . . . C 3 42.194 -26.259 16.643 1 18.83 ? C4D HEM 201 A 1 HETATM 33 C CMD HEM . . . C 3 41.181 -29.829 15.922 1 17.79 ? CMD HEM 201 A 1 HETATM 34 C CAD HEM . . . C 3 43.498 -28.397 17.585 1 20.95 ? CAD HEM 201 A 1 HETATM 35 C CBD HEM . . . C 3 43.007 -28.77 18.977 1 23.63 ? CBD HEM 201 A 1 HETATM 36 C CGD HEM . . . C 3 44.093 -29.544 19.688 1 37.36 ? CGD HEM 201 A 1 HETATM 37 O O1D HEM . . . C 3 44.663 -30.487 19.081 1 41.5 ? O1D HEM 201 A 1 HETATM 38 O O2D HEM . . . C 3 44.377 -29.23 20.868 1 44.46 ? O2D HEM 201 A 1 HETATM 39 N NA HEM . . . C 3 41.651 -23.285 16.535 1 15.2 ? NA HEM 201 A 1 HETATM 40 N NB HEM . . . C 3 39.459 -22.422 14.919 1 12.34 ? NB HEM 201 A 1 HETATM 41 N NC HEM . . . C 3 38.879 -25.173 14.21 1 13.9 ? NC HEM 201 A 1 HETATM 42 N ND HEM . . . C 3 41.065 -26.065 15.842 1 14.99 ? ND HEM 201 A 1 HETATM 43 FE FE HEM . . . C 3 40.246 -24.244 15.411 1 15.29 ? FE HEM 201 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 43 #