data_6L64 # _model_server_result.job_id NL0fId0kYeCfp2_YBZiPzw _model_server_result.datetime_utc '2024-11-20 08:52:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6l64 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 6L64 # _exptl.entry_id 6L64 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description beta-D-glucopyranose _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6L64 _cell.length_a 48.65 _cell.length_b 48.65 _cell.length_c 259.23 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6L64 _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E 1 1 A,B,C,D,E 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 11_555 -x+y,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 129.615 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id BGC _chem_comp.mon_nstd_flag . _chem_comp.name beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms beta-D-glucose;D-glucose;glucose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C3 BGC sing 70 n n C2 C1 BGC sing 71 n n C2 O2 BGC sing 72 n n C2 H2 BGC sing 73 n n C3 C4 BGC sing 74 n n C3 O3 BGC sing 75 n n C3 H3 BGC sing 76 n n C4 C5 BGC sing 77 n n C4 O4 BGC sing 78 n n C4 H4 BGC sing 79 n n C5 C6 BGC sing 80 n n C5 O5 BGC sing 81 n n C5 H5 BGC sing 82 n n C6 O6 BGC sing 83 n n C6 H61 BGC sing 84 n n C6 H62 BGC sing 85 n n C1 O1 BGC sing 86 n n C1 O5 BGC sing 87 n n C1 H1 BGC sing 88 n n O1 HO1 BGC sing 89 n n O2 HO2 BGC sing 90 n n O3 HO3 BGC sing 91 n n O4 HO4 BGC sing 92 n n O6 HO6 BGC sing 93 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version BGC DGlcpb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 BGC b-D-glucopyranose 'COMMON NAME' GMML 1 BGC b-D-Glcp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 BGC Glc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6L64 _atom_sites.fract_transf_matrix[1][1] 0.020555 _atom_sites.fract_transf_matrix[1][2] 0.011867 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023735 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003858 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BGC A 1 201 201 BGC BGC . C 2 BGC A 1 202 202 BGC BGC . D 2 BGC A 1 203 203 BGC BGC . E 3 HOH A 1 301 28 HOH HOH . E 3 HOH A 2 302 16 HOH HOH . E 3 HOH A 3 303 1 HOH HOH . E 3 HOH A 4 304 24 HOH HOH . E 3 HOH A 5 305 30 HOH HOH . E 3 HOH A 6 306 26 HOH HOH . E 3 HOH A 7 307 8 HOH HOH . E 3 HOH A 8 308 14 HOH HOH . E 3 HOH A 9 309 3 HOH HOH . E 3 HOH A 10 310 20 HOH HOH . E 3 HOH A 11 311 11 HOH HOH . E 3 HOH A 12 312 5 HOH HOH . E 3 HOH A 13 313 7 HOH HOH . E 3 HOH A 14 314 6 HOH HOH . E 3 HOH A 15 315 10 HOH HOH . E 3 HOH A 16 316 4 HOH HOH . E 3 HOH A 17 317 12 HOH HOH . E 3 HOH A 18 318 21 HOH HOH . E 3 HOH A 19 319 2 HOH HOH . E 3 HOH A 20 320 15 HOH HOH . E 3 HOH A 21 321 9 HOH HOH . E 3 HOH A 22 322 18 HOH HOH . E 3 HOH A 23 323 23 HOH HOH . E 3 HOH A 24 324 19 HOH HOH . E 3 HOH A 25 325 17 HOH HOH . E 3 HOH A 26 326 13 HOH HOH . E 3 HOH A 27 327 22 HOH HOH . E 3 HOH A 28 328 29 HOH HOH . E 3 HOH A 29 329 27 HOH HOH . E 3 HOH A 30 330 25 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 BGC . . . D 2 -8.082 14.456 83.574 1 58.04 ? C2 BGC 203 A 1 HETATM 2 C C3 BGC . . . D 2 -8.159 15.65 84.506 1 56.6 ? C3 BGC 203 A 1 HETATM 3 C C4 BGC . . . D 2 -6.776 15.784 85.127 1 55.55 ? C4 BGC 203 A 1 HETATM 4 C C5 BGC . . . D 2 -5.646 15.81 84.065 1 57.13 ? C5 BGC 203 A 1 HETATM 5 C C6 BGC . . . D 2 -4.348 15.182 84.569 1 59.56 ? C6 BGC 203 A 1 HETATM 6 C C1 BGC . . . D 2 -7.19 14.802 82.398 1 59.12 ? C1 BGC 203 A 1 HETATM 7 O O1 BGC . . . D 2 -7.143 13.659 81.553 1 61.17 ? O1 BGC 203 A 1 HETATM 8 O O2 BGC . . . D 2 -9.35 14.137 83.042 1 61.36 ? O2 BGC 203 A 1 HETATM 9 O O3 BGC . . . D 2 -9.187 15.516 85.505 1 53.16 ? O3 BGC 203 A 1 HETATM 10 O O4 BGC . . . D 2 -6.799 16.982 85.926 1 50.17 ? O4 BGC 203 A 1 HETATM 11 O O5 BGC . . . D 2 -5.866 15.123 82.813 1 59.78 ? O5 BGC 203 A 1 HETATM 12 O O6 BGC . . . D 2 -3.255 15.697 83.797 1 61.18 ? O6 BGC 203 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 359 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 12 #