data_6L66
#
_model_server_result.job_id            ONnL8qQjDlicscvIdTN5yQ 
_model_server_result.datetime_utc      '2024-11-22 08:59:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6l66 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":101}' 
#
_entry.id    6L66 
#
_exptl.entry_id    6L66 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              214.411 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            tridecanethial 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          97.62 
_cell.angle_gamma         90 
_cell.entry_id            6L66 
_cell.length_a            37.48 
_cell.length_b            78.044 
_cell.length_c            56.236 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6L66 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B NZ LYS 3 C LYS 9 1_555 E C1 3LX . C 3LX 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? 
metalc ? metalc1 A SG CYS 144 A CYS 195 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? 
metalc ? metalc2 A SG CYS 149 A CYS 200 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? 
metalc ? metalc3 A SG CYS 170 A CYS 221 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? 
metalc ? metalc4 A SG CYS 173 A CYS 224 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? 
#
_chem_comp.formula           'C13 H26 S' 
_chem_comp.formula_weight    214.411 
_chem_comp.id                3LX 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              tridecanethial 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C13 C12 3LX sing 1 n n 
C12 C11 3LX sing 2 n n 
C11 C10 3LX sing 3 n n 
C10 C9 3LX sing 4 n n 
C9 C8 3LX sing 5 n n 
C8 C7 3LX sing 6 n n 
C6 C7 3LX sing 7 n n 
C6 C5 3LX sing 8 n n 
C2 C3 3LX sing 9 n n 
C2 C1 3LX sing 10 n n 
C4 C5 3LX sing 11 n n 
C4 C3 3LX sing 12 n n 
C1 S1 3LX doub 13 n n 
C1 H1 3LX sing 14 n n 
C2 H2 3LX sing 15 n n 
C2 H3 3LX sing 16 n n 
C3 H4 3LX sing 17 n n 
C3 H5 3LX sing 18 n n 
C4 H6 3LX sing 19 n n 
C4 H7 3LX sing 20 n n 
C5 H8 3LX sing 21 n n 
C5 H9 3LX sing 22 n n 
C6 H10 3LX sing 23 n n 
C6 H11 3LX sing 24 n n 
C7 H12 3LX sing 25 n n 
C7 H13 3LX sing 26 n n 
C8 H14 3LX sing 27 n n 
C8 H15 3LX sing 28 n n 
C9 H16 3LX sing 29 n n 
C9 H17 3LX sing 30 n n 
C10 H18 3LX sing 31 n n 
C10 H19 3LX sing 32 n n 
C11 H20 3LX sing 33 n n 
C11 H21 3LX sing 34 n n 
C12 H22 3LX sing 35 n n 
C12 H23 3LX sing 36 n n 
C13 H24 3LX sing 37 n n 
C13 H25 3LX sing 38 n n 
C13 H26 3LX sing 39 n n 
#
_atom_sites.entry_id                     6L66 
_atom_sites.fract_transf_matrix[1][1]    0.026681 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00357 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012813 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017941 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 ZN A 1 401 401 ZN ZN . 
D 4 NAD A 1 402 702 NAD NAD . 
E 5 3LX C 1 101 101 3LX 3LX . 
F 6 HOH A 1 501 157 HOH HOH . 
F 6 HOH A 2 502 61 HOH HOH . 
F 6 HOH A 3 503 168 HOH HOH . 
F 6 HOH A 4 504 32 HOH HOH . 
F 6 HOH A 5 505 133 HOH HOH . 
F 6 HOH A 6 506 53 HOH HOH . 
F 6 HOH A 7 507 136 HOH HOH . 
F 6 HOH A 8 508 113 HOH HOH . 
F 6 HOH A 9 509 71 HOH HOH . 
F 6 HOH A 10 510 52 HOH HOH . 
F 6 HOH A 11 511 103 HOH HOH . 
F 6 HOH A 12 512 49 HOH HOH . 
F 6 HOH A 13 513 142 HOH HOH . 
F 6 HOH A 14 514 108 HOH HOH . 
F 6 HOH A 15 515 6 HOH HOH . 
F 6 HOH A 16 516 112 HOH HOH . 
F 6 HOH A 17 517 59 HOH HOH . 
F 6 HOH A 18 518 12 HOH HOH . 
F 6 HOH A 19 519 109 HOH HOH . 
F 6 HOH A 20 520 99 HOH HOH . 
F 6 HOH A 21 521 163 HOH HOH . 
F 6 HOH A 22 522 7 HOH HOH . 
F 6 HOH A 23 523 27 HOH HOH . 
F 6 HOH A 24 524 18 HOH HOH . 
F 6 HOH A 25 525 23 HOH HOH . 
F 6 HOH A 26 526 88 HOH HOH . 
F 6 HOH A 27 527 20 HOH HOH . 
F 6 HOH A 28 528 11 HOH HOH . 
F 6 HOH A 29 529 83 HOH HOH . 
F 6 HOH A 30 530 120 HOH HOH . 
F 6 HOH A 31 531 80 HOH HOH . 
F 6 HOH A 32 532 30 HOH HOH . 
F 6 HOH A 33 533 2 HOH HOH . 
F 6 HOH A 34 534 66 HOH HOH . 
F 6 HOH A 35 535 164 HOH HOH . 
F 6 HOH A 36 536 35 HOH HOH . 
F 6 HOH A 37 537 3 HOH HOH . 
F 6 HOH A 38 538 100 HOH HOH . 
F 6 HOH A 39 539 8 HOH HOH . 
F 6 HOH A 40 540 13 HOH HOH . 
F 6 HOH A 41 541 84 HOH HOH . 
F 6 HOH A 42 542 4 HOH HOH . 
F 6 HOH A 43 543 14 HOH HOH . 
F 6 HOH A 44 544 76 HOH HOH . 
F 6 HOH A 45 545 86 HOH HOH . 
F 6 HOH A 46 546 31 HOH HOH . 
F 6 HOH A 47 547 24 HOH HOH . 
F 6 HOH A 48 548 96 HOH HOH . 
F 6 HOH A 49 549 1 HOH HOH . 
F 6 HOH A 50 550 110 HOH HOH . 
F 6 HOH A 51 551 79 HOH HOH . 
F 6 HOH A 52 552 81 HOH HOH . 
F 6 HOH A 53 553 151 HOH HOH . 
F 6 HOH A 54 554 37 HOH HOH . 
F 6 HOH A 55 555 17 HOH HOH . 
F 6 HOH A 56 556 87 HOH HOH . 
F 6 HOH A 57 557 51 HOH HOH . 
F 6 HOH A 58 558 9 HOH HOH . 
F 6 HOH A 59 559 70 HOH HOH . 
F 6 HOH A 60 560 101 HOH HOH . 
F 6 HOH A 61 561 54 HOH HOH . 
F 6 HOH A 62 562 141 HOH HOH . 
F 6 HOH A 63 563 60 HOH HOH . 
F 6 HOH A 64 564 143 HOH HOH . 
F 6 HOH A 65 565 72 HOH HOH . 
F 6 HOH A 66 566 68 HOH HOH . 
F 6 HOH A 67 567 21 HOH HOH . 
F 6 HOH A 68 568 19 HOH HOH . 
F 6 HOH A 69 569 94 HOH HOH . 
F 6 HOH A 70 570 122 HOH HOH . 
F 6 HOH A 71 571 170 HOH HOH . 
F 6 HOH A 72 572 131 HOH HOH . 
F 6 HOH A 73 573 26 HOH HOH . 
F 6 HOH A 74 574 47 HOH HOH . 
F 6 HOH A 75 575 165 HOH HOH . 
F 6 HOH A 76 576 145 HOH HOH . 
F 6 HOH A 77 577 62 HOH HOH . 
F 6 HOH A 78 578 156 HOH HOH . 
F 6 HOH A 79 579 5 HOH HOH . 
F 6 HOH A 80 580 50 HOH HOH . 
F 6 HOH A 81 581 124 HOH HOH . 
F 6 HOH A 82 582 78 HOH HOH . 
F 6 HOH A 83 583 90 HOH HOH . 
F 6 HOH A 84 584 106 HOH HOH . 
F 6 HOH A 85 585 126 HOH HOH . 
F 6 HOH A 86 586 25 HOH HOH . 
F 6 HOH A 87 587 16 HOH HOH . 
F 6 HOH A 88 588 73 HOH HOH . 
F 6 HOH A 89 589 33 HOH HOH . 
F 6 HOH A 90 590 102 HOH HOH . 
F 6 HOH A 91 591 56 HOH HOH . 
F 6 HOH A 92 592 74 HOH HOH . 
F 6 HOH A 93 593 91 HOH HOH . 
F 6 HOH A 94 594 64 HOH HOH . 
F 6 HOH A 95 595 46 HOH HOH . 
F 6 HOH A 96 596 48 HOH HOH . 
F 6 HOH A 97 597 174 HOH HOH . 
F 6 HOH A 98 598 121 HOH HOH . 
F 6 HOH A 99 599 42 HOH HOH . 
F 6 HOH A 100 600 93 HOH HOH . 
F 6 HOH A 101 601 171 HOH HOH . 
F 6 HOH A 102 602 58 HOH HOH . 
F 6 HOH A 103 603 10 HOH HOH . 
F 6 HOH A 104 604 177 HOH HOH . 
F 6 HOH A 105 605 138 HOH HOH . 
F 6 HOH A 106 606 105 HOH HOH . 
F 6 HOH A 107 607 75 HOH HOH . 
F 6 HOH A 108 608 43 HOH HOH . 
F 6 HOH A 109 609 111 HOH HOH . 
F 6 HOH A 110 610 172 HOH HOH . 
F 6 HOH A 111 611 116 HOH HOH . 
F 6 HOH A 112 612 166 HOH HOH . 
F 6 HOH A 113 613 57 HOH HOH . 
F 6 HOH A 114 614 140 HOH HOH . 
F 6 HOH A 115 615 123 HOH HOH . 
F 6 HOH A 116 616 36 HOH HOH . 
F 6 HOH A 117 617 137 HOH HOH . 
F 6 HOH A 118 618 95 HOH HOH . 
F 6 HOH A 119 619 38 HOH HOH . 
F 6 HOH A 120 620 134 HOH HOH . 
F 6 HOH A 121 621 92 HOH HOH . 
F 6 HOH A 122 622 161 HOH HOH . 
F 6 HOH A 123 623 118 HOH HOH . 
F 6 HOH A 124 624 153 HOH HOH . 
F 6 HOH A 125 625 135 HOH HOH . 
F 6 HOH A 126 626 104 HOH HOH . 
F 6 HOH A 127 627 132 HOH HOH . 
F 6 HOH A 128 628 115 HOH HOH . 
F 6 HOH A 129 629 41 HOH HOH . 
F 6 HOH A 130 630 67 HOH HOH . 
F 6 HOH A 131 631 22 HOH HOH . 
F 6 HOH A 132 632 150 HOH HOH . 
F 6 HOH A 133 633 34 HOH HOH . 
F 6 HOH A 134 634 28 HOH HOH . 
F 6 HOH A 135 635 40 HOH HOH . 
F 6 HOH A 136 636 45 HOH HOH . 
F 6 HOH A 137 637 114 HOH HOH . 
F 6 HOH A 138 638 98 HOH HOH . 
F 6 HOH A 139 639 97 HOH HOH . 
F 6 HOH A 140 640 77 HOH HOH . 
F 6 HOH A 141 641 147 HOH HOH . 
F 6 HOH A 142 642 69 HOH HOH . 
F 6 HOH A 143 643 44 HOH HOH . 
F 6 HOH A 144 644 167 HOH HOH . 
F 6 HOH A 145 645 173 HOH HOH . 
F 6 HOH A 146 646 107 HOH HOH . 
F 6 HOH A 147 647 155 HOH HOH . 
F 6 HOH A 148 648 169 HOH HOH . 
F 6 HOH A 149 649 149 HOH HOH . 
F 6 HOH A 150 650 159 HOH HOH . 
F 6 HOH A 151 651 144 HOH HOH . 
F 6 HOH A 152 652 89 HOH HOH . 
F 6 HOH A 153 653 29 HOH HOH . 
F 6 HOH A 154 654 130 HOH HOH . 
F 6 HOH A 155 655 127 HOH HOH . 
F 6 HOH A 156 656 146 HOH HOH . 
F 6 HOH A 157 657 119 HOH HOH . 
F 6 HOH A 158 658 175 HOH HOH . 
F 6 HOH A 159 659 139 HOH HOH . 
F 6 HOH A 160 660 63 HOH HOH . 
F 6 HOH A 161 661 125 HOH HOH . 
F 6 HOH A 162 662 15 HOH HOH . 
F 6 HOH A 163 663 55 HOH HOH . 
F 6 HOH A 164 664 152 HOH HOH . 
F 6 HOH A 165 665 85 HOH HOH . 
F 6 HOH A 166 666 162 HOH HOH . 
F 6 HOH A 167 667 65 HOH HOH . 
F 6 HOH A 168 668 158 HOH HOH . 
F 6 HOH A 169 669 129 HOH HOH . 
F 6 HOH A 170 670 176 HOH HOH . 
F 6 HOH A 171 671 154 HOH HOH . 
F 6 HOH A 172 672 148 HOH HOH . 
F 6 HOH A 173 673 160 HOH HOH . 
G 6 HOH C 1 201 117 HOH HOH . 
G 6 HOH C 2 202 128 HOH HOH . 
G 6 HOH C 3 203 39 HOH HOH . 
G 6 HOH C 4 204 82 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 3LX . . . E 5 -11.274 12.139 -16.719 1 47.96 ? C1 3LX 101 C 1 
HETATM 2 S S1 3LX . . . E 5 -12.54 11.313 -16.188 1 61.2 ? S1 3LX 101 C 1 
HETATM 3 C C2 3LX . . . E 5 -11.454 13.555 -17.259 1 42.32 ? C2 3LX 101 C 1 
HETATM 4 C C3 3LX . . . E 5 -12.936 13.885 -17.33 1 46.11 ? C3 3LX 101 C 1 
HETATM 5 C C4 3LX . . . E 5 -13.116 15.33 -17.795 1 44.53 ? C4 3LX 101 C 1 
HETATM 6 C C5 3LX . . . E 5 -14.071 16.018 -16.83 1 43.24 ? C5 3LX 101 C 1 
HETATM 7 C C6 3LX . . . E 5 -14.8 17.126 -17.58 1 45.39 ? C6 3LX 101 C 1 
HETATM 8 C C7 3LX . . . E 5 -14.751 18.378 -16.715 1 53.38 ? C7 3LX 101 C 1 
HETATM 9 C C8 3LX . . . E 5 -15.516 19.516 -17.387 1 54.92 ? C8 3LX 101 C 1 
HETATM 10 C C9 3LX . . . E 5 -14.622 20.749 -17.422 1 53.75 ? C9 3LX 101 C 1 
HETATM 11 C C10 3LX . . . E 5 -14.736 21.544 -16.117 1 56.18 ? C10 3LX 101 C 1 
HETATM 12 C C11 3LX . . . E 5 -14.236 22.971 -16.351 1 47.2 ? C11 3LX 101 C 1 
HETATM 13 C C12 3LX . . . E 5 -13.396 23.422 -15.158 1 46.66 ? C12 3LX 101 C 1 
HETATM 14 C C13 3LX . . . E 5 -12.213 24.242 -15.658 1 37.52 ? C13 3LX 101 C 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           256 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           14 
#