data_6L6C # _model_server_result.job_id w21Y853gWpLwt2xILQMXfQ _model_server_result.datetime_utc '2024-11-18 22:35:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6l6c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 6L6C # _exptl.entry_id 6L6C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 150.13 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description alpha-D-arabinopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6L6C _cell.length_a 48.78 _cell.length_b 48.78 _cell.length_c 260.21 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6L6C _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D 1 1 A,B,C,D 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 11_555 -x+y,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 130.105 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _chem_comp.formula 'C5 H10 O5' _chem_comp.formula_weight 150.13 _chem_comp.id 64K _chem_comp.mon_nstd_flag . _chem_comp.name alpha-D-arabinopyranose _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms alpha-D-arabinose;D-arabinose;arabinose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 64K sing 1 n n C2 C1 64K sing 2 n n C2 O2 64K sing 3 n n C2 C3 64K sing 4 n n C1 O5 64K sing 5 n n O5 C5 64K sing 6 n n O4 C4 64K sing 7 n n O3 C3 64K sing 8 n n C3 C4 64K sing 9 n n C4 C5 64K sing 10 n n O2 HO2 64K sing 11 n n C2 H2 64K sing 12 n n C3 H3 64K sing 13 n n O3 HO3 64K sing 14 n n C4 H4 64K sing 15 n n O4 HO4 64K sing 16 n n C5 H51 64K sing 17 n n C5 H52 64K sing 18 n n C1 H1 64K sing 19 n n O1 HO1 64K sing 20 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version 64K DArapa 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 64K a-D-arabinopyranose 'COMMON NAME' GMML 1 64K a-D-Arap 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 64K Ara 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6L6C _atom_sites.fract_transf_matrix[1][1] 0.0205 _atom_sites.fract_transf_matrix[1][2] 0.011836 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023672 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003843 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 64K A 1 201 201 64K AR5 . C 2 64K A 1 202 203 64K AR5 . D 3 HOH A 1 301 17 HOH HOH . D 3 HOH A 2 302 22 HOH HOH . D 3 HOH A 3 303 39 HOH HOH . D 3 HOH A 4 304 2 HOH HOH . D 3 HOH A 5 305 24 HOH HOH . D 3 HOH A 6 306 3 HOH HOH . D 3 HOH A 7 307 48 HOH HOH . D 3 HOH A 8 308 49 HOH HOH . D 3 HOH A 9 309 30 HOH HOH . D 3 HOH A 10 310 27 HOH HOH . D 3 HOH A 11 311 53 HOH HOH . D 3 HOH A 12 312 31 HOH HOH . D 3 HOH A 13 313 10 HOH HOH . D 3 HOH A 14 314 15 HOH HOH . D 3 HOH A 15 315 25 HOH HOH . D 3 HOH A 16 316 6 HOH HOH . D 3 HOH A 17 317 11 HOH HOH . D 3 HOH A 18 318 26 HOH HOH . D 3 HOH A 19 319 23 HOH HOH . D 3 HOH A 20 320 14 HOH HOH . D 3 HOH A 21 321 38 HOH HOH . D 3 HOH A 22 322 5 HOH HOH . D 3 HOH A 23 323 16 HOH HOH . D 3 HOH A 24 324 9 HOH HOH . D 3 HOH A 25 325 12 HOH HOH . D 3 HOH A 26 326 58 HOH HOH . D 3 HOH A 27 327 41 HOH HOH . D 3 HOH A 28 328 56 HOH HOH . D 3 HOH A 29 329 59 HOH HOH . D 3 HOH A 30 330 44 HOH HOH . D 3 HOH A 31 331 42 HOH HOH . D 3 HOH A 32 332 43 HOH HOH . D 3 HOH A 33 333 32 HOH HOH . D 3 HOH A 34 334 29 HOH HOH . D 3 HOH A 35 335 46 HOH HOH . D 3 HOH A 36 336 7 HOH HOH . D 3 HOH A 37 337 52 HOH HOH . D 3 HOH A 38 338 47 HOH HOH . D 3 HOH A 39 339 18 HOH HOH . D 3 HOH A 40 340 8 HOH HOH . D 3 HOH A 41 341 45 HOH HOH . D 3 HOH A 42 342 55 HOH HOH . D 3 HOH A 43 343 34 HOH HOH . D 3 HOH A 44 344 13 HOH HOH . D 3 HOH A 45 345 19 HOH HOH . D 3 HOH A 46 346 54 HOH HOH . D 3 HOH A 47 347 37 HOH HOH . D 3 HOH A 48 348 4 HOH HOH . D 3 HOH A 49 349 1 HOH HOH . D 3 HOH A 50 350 60 HOH HOH . D 3 HOH A 51 351 51 HOH HOH . D 3 HOH A 52 352 40 HOH HOH . D 3 HOH A 53 353 21 HOH HOH . D 3 HOH A 54 354 36 HOH HOH . D 3 HOH A 55 355 50 HOH HOH . D 3 HOH A 56 356 28 HOH HOH . D 3 HOH A 57 357 33 HOH HOH . D 3 HOH A 58 358 20 HOH HOH . D 3 HOH A 59 359 57 HOH HOH . D 3 HOH A 60 360 61 HOH HOH . D 3 HOH A 61 361 35 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O2 64K . . . B 2 2.374 19.024 73.974 1 22.4 ? O2 64K 201 A 1 HETATM 2 C C2 64K . . . B 2 3.254 19.077 72.865 1 25.7 ? C2 64K 201 A 1 HETATM 3 C C3 64K . . . B 2 3.592 20.534 72.577 1 25.52 ? C3 64K 201 A 1 HETATM 4 O O3 64K . . . B 2 2.406 21.236 72.149 1 25.73 ? O3 64K 201 A 1 HETATM 5 C C4 64K . . . B 2 4.684 20.599 71.501 1 26.55 ? C4 64K 201 A 1 HETATM 6 O O4 64K . . . B 2 4.141 20.415 70.186 1 26.01 ? O4 64K 201 A 1 HETATM 7 C C5 64K . . . B 2 5.789 19.557 71.683 1 25.6 ? C5 64K 201 A 1 HETATM 8 O O5 64K . . . B 2 5.278 18.253 71.914 1 27.87 ? O5 64K 201 A 1 HETATM 9 C C1 64K . . . B 2 4.497 18.22 73.11 1 26.9 ? C1 64K 201 A 1 HETATM 10 O O1 64K . . . B 2 4.195 16.855 73.396 1 27.3 ? O1 64K 201 A 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 10 #