data_6L6J # _model_server_result.job_id 2VFoT9XwDsa85Jc9BgGEWQ _model_server_result.datetime_utc '2024-10-20 19:24:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6l6j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 6L6J # _exptl.entry_id 6L6J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6L6J _cell.length_a 115.11 _cell.length_b 212.902 _cell.length_c 79.47 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6L6J _symmetry.cell_setting ? _symmetry.Int_Tables_number 21 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 344 A CYS 344 1_555 C FE2 SF4 . A SF4 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? metalc ? metalc2 A SG CYS 347 A CYS 347 1_555 C FE1 SF4 . A SF4 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc3 A SG CYS 350 A CYS 350 1_555 C FE4 SF4 . A SF4 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc4 A SG CYS 362 A CYS 362 1_555 C FE3 SF4 . A SF4 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 144 n n N1 C10 FMN doub 145 n n C2 O2 FMN doub 146 n n C2 N3 FMN sing 147 n n N3 C4 FMN sing 148 n n N3 HN3 FMN sing 149 n n C4 O4 FMN doub 150 n n C4 C4A FMN sing 151 n n C4A N5 FMN doub 152 n n C4A C10 FMN sing 153 n n N5 C5A FMN sing 154 n n C5A C6 FMN doub 155 n y C5A C9A FMN sing 156 n y C6 C7 FMN sing 157 n y C6 H6 FMN sing 158 n n C7 C7M FMN sing 159 n n C7 C8 FMN doub 160 n y C7M HM71 FMN sing 161 n n C7M HM72 FMN sing 162 n n C7M HM73 FMN sing 163 n n C8 C8M FMN sing 164 n n C8 C9 FMN sing 165 n y C8M HM81 FMN sing 166 n n C8M HM82 FMN sing 167 n n C8M HM83 FMN sing 168 n n C9 C9A FMN doub 169 n y C9 H9 FMN sing 170 n n C9A N10 FMN sing 171 n n N10 C10 FMN sing 172 n n N10 C1' FMN sing 173 n n C1' C2' FMN sing 174 n n C1' "H1'1" FMN sing 175 n n C1' "H1'2" FMN sing 176 n n C2' O2' FMN sing 177 n n C2' C3' FMN sing 178 n n C2' H2' FMN sing 179 n n O2' HO2' FMN sing 180 n n C3' O3' FMN sing 181 n n C3' C4' FMN sing 182 n n C3' H3' FMN sing 183 n n O3' HO3' FMN sing 184 n n C4' O4' FMN sing 185 n n C4' C5' FMN sing 186 n n C4' H4' FMN sing 187 n n O4' HO4' FMN sing 188 n n C5' O5' FMN sing 189 n n C5' "H5'1" FMN sing 190 n n C5' "H5'2" FMN sing 191 n n O5' P FMN sing 192 n n P O1P FMN doub 193 n n P O2P FMN sing 194 n n P O3P FMN sing 195 n n O2P HOP2 FMN sing 196 n n O3P HOP3 FMN sing 197 n n # _atom_sites.entry_id 6L6J _atom_sites.fract_transf_matrix[1][1] 0.008687 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004697 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012583 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 701 701 FMN FMN . C 3 SF4 A 1 702 801 SF4 SF4 . D 4 ADP A 1 703 901 ADP ADP . E 5 SO4 A 1 704 1 SO4 SO4 . F 5 SO4 A 1 705 2 SO4 SO4 . G 5 SO4 A 1 706 3 SO4 SO4 . H 6 FLC A 1 707 11 FLC FLC . I 7 HOH A 1 801 229 HOH HOH . I 7 HOH A 2 802 246 HOH HOH . I 7 HOH A 3 803 176 HOH HOH . I 7 HOH A 4 804 220 HOH HOH . I 7 HOH A 5 805 239 HOH HOH . I 7 HOH A 6 806 228 HOH HOH . I 7 HOH A 7 807 194 HOH HOH . I 7 HOH A 8 808 192 HOH HOH . I 7 HOH A 9 809 233 HOH HOH . I 7 HOH A 10 810 189 HOH HOH . I 7 HOH A 11 811 26 HOH HOH . I 7 HOH A 12 812 219 HOH HOH . I 7 HOH A 13 813 3 HOH HOH . I 7 HOH A 14 814 197 HOH HOH . I 7 HOH A 15 815 34 HOH HOH . I 7 HOH A 16 816 31 HOH HOH . I 7 HOH A 17 817 168 HOH HOH . I 7 HOH A 18 818 191 HOH HOH . I 7 HOH A 19 819 190 HOH HOH . I 7 HOH A 20 820 225 HOH HOH . I 7 HOH A 21 821 227 HOH HOH . I 7 HOH A 22 822 213 HOH HOH . I 7 HOH A 23 823 199 HOH HOH . I 7 HOH A 24 824 15 HOH HOH . I 7 HOH A 25 825 180 HOH HOH . I 7 HOH A 26 826 235 HOH HOH . I 7 HOH A 27 827 188 HOH HOH . I 7 HOH A 28 828 193 HOH HOH . I 7 HOH A 29 829 187 HOH HOH . I 7 HOH A 30 830 245 HOH HOH . I 7 HOH A 31 831 186 HOH HOH . I 7 HOH A 32 832 82 HOH HOH . I 7 HOH A 33 833 200 HOH HOH . I 7 HOH A 34 834 238 HOH HOH . I 7 HOH A 35 835 183 HOH HOH . I 7 HOH A 36 836 216 HOH HOH . I 7 HOH A 37 837 22 HOH HOH . I 7 HOH A 38 838 212 HOH HOH . I 7 HOH A 39 839 230 HOH HOH . I 7 HOH A 40 840 198 HOH HOH . I 7 HOH A 41 841 181 HOH HOH . I 7 HOH A 42 842 207 HOH HOH . I 7 HOH A 43 843 237 HOH HOH . I 7 HOH A 44 844 177 HOH HOH . I 7 HOH A 45 845 134 HOH HOH . I 7 HOH A 46 846 206 HOH HOH . I 7 HOH A 47 847 243 HOH HOH . I 7 HOH A 48 848 222 HOH HOH . I 7 HOH A 49 849 57 HOH HOH . I 7 HOH A 50 850 209 HOH HOH . I 7 HOH A 51 851 232 HOH HOH . I 7 HOH A 52 852 169 HOH HOH . I 7 HOH A 53 853 241 HOH HOH . I 7 HOH A 54 854 223 HOH HOH . I 7 HOH A 55 855 182 HOH HOH . I 7 HOH A 56 856 202 HOH HOH . I 7 HOH A 57 857 9 HOH HOH . I 7 HOH A 58 858 224 HOH HOH . I 7 HOH A 59 859 231 HOH HOH . I 7 HOH A 60 860 240 HOH HOH . I 7 HOH A 61 861 127 HOH HOH . I 7 HOH A 62 862 210 HOH HOH . I 7 HOH A 63 863 244 HOH HOH . I 7 HOH A 64 864 131 HOH HOH . I 7 HOH A 65 865 196 HOH HOH . I 7 HOH A 66 866 204 HOH HOH . I 7 HOH A 67 867 135 HOH HOH . I 7 HOH A 68 868 5 HOH HOH . I 7 HOH A 69 869 203 HOH HOH . I 7 HOH A 70 870 138 HOH HOH . I 7 HOH A 71 871 19 HOH HOH . I 7 HOH A 72 872 119 HOH HOH . I 7 HOH A 73 873 12 HOH HOH . I 7 HOH A 74 874 36 HOH HOH . I 7 HOH A 75 875 75 HOH HOH . I 7 HOH A 76 876 211 HOH HOH . I 7 HOH A 77 877 234 HOH HOH . I 7 HOH A 78 878 218 HOH HOH . I 7 HOH A 79 879 195 HOH HOH . I 7 HOH A 80 880 226 HOH HOH . I 7 HOH A 81 881 16 HOH HOH . I 7 HOH A 82 882 23 HOH HOH . I 7 HOH A 83 883 133 HOH HOH . I 7 HOH A 84 884 215 HOH HOH . I 7 HOH A 85 885 178 HOH HOH . I 7 HOH A 86 886 38 HOH HOH . I 7 HOH A 87 887 97 HOH HOH . I 7 HOH A 88 888 242 HOH HOH . I 7 HOH A 89 889 179 HOH HOH . I 7 HOH A 90 890 208 HOH HOH . I 7 HOH A 91 891 78 HOH HOH . I 7 HOH A 92 892 89 HOH HOH . I 7 HOH A 93 893 167 HOH HOH . I 7 HOH A 94 894 51 HOH HOH . I 7 HOH A 95 895 72 HOH HOH . I 7 HOH A 96 896 21 HOH HOH . I 7 HOH A 97 897 79 HOH HOH . I 7 HOH A 98 898 24 HOH HOH . I 7 HOH A 99 899 201 HOH HOH . I 7 HOH A 100 900 114 HOH HOH . I 7 HOH A 101 901 56 HOH HOH . I 7 HOH A 102 902 8 HOH HOH . I 7 HOH A 103 903 185 HOH HOH . I 7 HOH A 104 904 184 HOH HOH . I 7 HOH A 105 905 205 HOH HOH . I 7 HOH A 106 906 217 HOH HOH . I 7 HOH A 107 907 214 HOH HOH . I 7 HOH A 108 908 175 HOH HOH . I 7 HOH A 109 909 221 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . B 2 46.561 47.464 21.505 1 30.6 ? N1 FMN 701 A 1 HETATM 2 C C2 FMN . . . B 2 46.091 46.362 20.837 1 31.69 ? C2 FMN 701 A 1 HETATM 3 O O2 FMN . . . B 2 46.74 45.316 20.934 1 34.56 ? O2 FMN 701 A 1 HETATM 4 N N3 FMN . . . B 2 45 46.345 20.06 1 29.69 ? N3 FMN 701 A 1 HETATM 5 C C4 FMN . . . B 2 44.265 47.456 19.884 1 28.54 ? C4 FMN 701 A 1 HETATM 6 O O4 FMN . . . B 2 43.261 47.438 19.174 1 23.32 ? O4 FMN 701 A 1 HETATM 7 C C4A FMN . . . B 2 44.676 48.701 20.591 1 29.52 ? C4A FMN 701 A 1 HETATM 8 N N5 FMN . . . B 2 43.975 49.853 20.461 1 29.28 ? N5 FMN 701 A 1 HETATM 9 C C5A FMN . . . B 2 44.434 50.975 21.061 1 30.51 ? C5A FMN 701 A 1 HETATM 10 C C6 FMN . . . B 2 43.761 52.179 20.87 1 28.75 ? C6 FMN 701 A 1 HETATM 11 C C7 FMN . . . B 2 44.248 53.323 21.47 1 27.65 ? C7 FMN 701 A 1 HETATM 12 C C7M FMN . . . B 2 43.484 54.58 21.309 1 29.78 ? C7M FMN 701 A 1 HETATM 13 C C8 FMN . . . B 2 45.477 53.293 22.272 1 28.42 ? C8 FMN 701 A 1 HETATM 14 C C8M FMN . . . B 2 46.002 54.517 22.963 1 33.08 ? C8M FMN 701 A 1 HETATM 15 C C9 FMN . . . B 2 46.154 52.119 22.468 1 27.87 ? C9 FMN 701 A 1 HETATM 16 C C9A FMN . . . B 2 45.695 50.946 21.885 1 28.46 ? C9A FMN 701 A 1 HETATM 17 N N10 FMN . . . B 2 46.4 49.743 22.034 1 28.02 ? N10 FMN 701 A 1 HETATM 18 C C10 FMN . . . B 2 45.909 48.628 21.401 1 27.22 ? C10 FMN 701 A 1 HETATM 19 C C1' FMN . . . B 2 47.661 49.639 22.835 1 29.24 ? C1' FMN 701 A 1 HETATM 20 C C2' FMN . . . B 2 48.85 50.122 22.026 1 26.33 ? C2' FMN 701 A 1 HETATM 21 O O2' FMN . . . B 2 49.032 49.198 20.968 1 25.77 ? O2' FMN 701 A 1 HETATM 22 C C3' FMN . . . B 2 50.114 50.192 22.829 1 27.04 ? C3' FMN 701 A 1 HETATM 23 O O3' FMN . . . B 2 50.476 48.871 23.233 1 29.14 ? O3' FMN 701 A 1 HETATM 24 C C4' FMN . . . B 2 50.027 51.091 24.062 1 26.57 ? C4' FMN 701 A 1 HETATM 25 O O4' FMN . . . B 2 49.346 52.325 23.733 1 27.59 ? O4' FMN 701 A 1 HETATM 26 C C5' FMN . . . B 2 51.406 51.36 24.648 1 22.79 ? C5' FMN 701 A 1 HETATM 27 O O5' FMN . . . B 2 52.178 52.038 23.672 1 24.04 ? O5' FMN 701 A 1 HETATM 28 P P FMN . . . B 2 52.269 53.655 23.672 1 25.8 ? P FMN 701 A 1 HETATM 29 O O1P FMN . . . B 2 52.939 54.032 24.974 1 23.09 ? O1P FMN 701 A 1 HETATM 30 O O2P FMN . . . B 2 53.087 53.924 22.448 1 26.19 ? O2P FMN 701 A 1 HETATM 31 O O3P FMN . . . B 2 50.835 54.138 23.565 1 25.32 ? O3P FMN 701 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 346 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #