data_6L6J # _model_server_result.job_id jdrXh9876amFtyth2fsfHg _model_server_result.datetime_utc '2024-10-20 19:18:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6l6j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":703}' # _entry.id 6L6J # _exptl.entry_id 6L6J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6L6J _cell.length_a 115.11 _cell.length_b 212.902 _cell.length_c 79.47 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6L6J _symmetry.cell_setting ? _symmetry.Int_Tables_number 21 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 344 A CYS 344 1_555 C FE2 SF4 . A SF4 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? metalc ? metalc2 A SG CYS 347 A CYS 347 1_555 C FE1 SF4 . A SF4 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc3 A SG CYS 350 A CYS 350 1_555 C FE4 SF4 . A SF4 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc4 A SG CYS 362 A CYS 362 1_555 C FE3 SF4 . A SF4 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 6L6J _atom_sites.fract_transf_matrix[1][1] 0.008687 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004697 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012583 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 701 701 FMN FMN . C 3 SF4 A 1 702 801 SF4 SF4 . D 4 ADP A 1 703 901 ADP ADP . E 5 SO4 A 1 704 1 SO4 SO4 . F 5 SO4 A 1 705 2 SO4 SO4 . G 5 SO4 A 1 706 3 SO4 SO4 . H 6 FLC A 1 707 11 FLC FLC . I 7 HOH A 1 801 229 HOH HOH . I 7 HOH A 2 802 246 HOH HOH . I 7 HOH A 3 803 176 HOH HOH . I 7 HOH A 4 804 220 HOH HOH . I 7 HOH A 5 805 239 HOH HOH . I 7 HOH A 6 806 228 HOH HOH . I 7 HOH A 7 807 194 HOH HOH . I 7 HOH A 8 808 192 HOH HOH . I 7 HOH A 9 809 233 HOH HOH . I 7 HOH A 10 810 189 HOH HOH . I 7 HOH A 11 811 26 HOH HOH . I 7 HOH A 12 812 219 HOH HOH . I 7 HOH A 13 813 3 HOH HOH . I 7 HOH A 14 814 197 HOH HOH . I 7 HOH A 15 815 34 HOH HOH . I 7 HOH A 16 816 31 HOH HOH . I 7 HOH A 17 817 168 HOH HOH . I 7 HOH A 18 818 191 HOH HOH . I 7 HOH A 19 819 190 HOH HOH . I 7 HOH A 20 820 225 HOH HOH . I 7 HOH A 21 821 227 HOH HOH . I 7 HOH A 22 822 213 HOH HOH . I 7 HOH A 23 823 199 HOH HOH . I 7 HOH A 24 824 15 HOH HOH . I 7 HOH A 25 825 180 HOH HOH . I 7 HOH A 26 826 235 HOH HOH . I 7 HOH A 27 827 188 HOH HOH . I 7 HOH A 28 828 193 HOH HOH . I 7 HOH A 29 829 187 HOH HOH . I 7 HOH A 30 830 245 HOH HOH . I 7 HOH A 31 831 186 HOH HOH . I 7 HOH A 32 832 82 HOH HOH . I 7 HOH A 33 833 200 HOH HOH . I 7 HOH A 34 834 238 HOH HOH . I 7 HOH A 35 835 183 HOH HOH . I 7 HOH A 36 836 216 HOH HOH . I 7 HOH A 37 837 22 HOH HOH . I 7 HOH A 38 838 212 HOH HOH . I 7 HOH A 39 839 230 HOH HOH . I 7 HOH A 40 840 198 HOH HOH . I 7 HOH A 41 841 181 HOH HOH . I 7 HOH A 42 842 207 HOH HOH . I 7 HOH A 43 843 237 HOH HOH . I 7 HOH A 44 844 177 HOH HOH . I 7 HOH A 45 845 134 HOH HOH . I 7 HOH A 46 846 206 HOH HOH . I 7 HOH A 47 847 243 HOH HOH . I 7 HOH A 48 848 222 HOH HOH . I 7 HOH A 49 849 57 HOH HOH . I 7 HOH A 50 850 209 HOH HOH . I 7 HOH A 51 851 232 HOH HOH . I 7 HOH A 52 852 169 HOH HOH . I 7 HOH A 53 853 241 HOH HOH . I 7 HOH A 54 854 223 HOH HOH . I 7 HOH A 55 855 182 HOH HOH . I 7 HOH A 56 856 202 HOH HOH . I 7 HOH A 57 857 9 HOH HOH . I 7 HOH A 58 858 224 HOH HOH . I 7 HOH A 59 859 231 HOH HOH . I 7 HOH A 60 860 240 HOH HOH . I 7 HOH A 61 861 127 HOH HOH . I 7 HOH A 62 862 210 HOH HOH . I 7 HOH A 63 863 244 HOH HOH . I 7 HOH A 64 864 131 HOH HOH . I 7 HOH A 65 865 196 HOH HOH . I 7 HOH A 66 866 204 HOH HOH . I 7 HOH A 67 867 135 HOH HOH . I 7 HOH A 68 868 5 HOH HOH . I 7 HOH A 69 869 203 HOH HOH . I 7 HOH A 70 870 138 HOH HOH . I 7 HOH A 71 871 19 HOH HOH . I 7 HOH A 72 872 119 HOH HOH . I 7 HOH A 73 873 12 HOH HOH . I 7 HOH A 74 874 36 HOH HOH . I 7 HOH A 75 875 75 HOH HOH . I 7 HOH A 76 876 211 HOH HOH . I 7 HOH A 77 877 234 HOH HOH . I 7 HOH A 78 878 218 HOH HOH . I 7 HOH A 79 879 195 HOH HOH . I 7 HOH A 80 880 226 HOH HOH . I 7 HOH A 81 881 16 HOH HOH . I 7 HOH A 82 882 23 HOH HOH . I 7 HOH A 83 883 133 HOH HOH . I 7 HOH A 84 884 215 HOH HOH . I 7 HOH A 85 885 178 HOH HOH . I 7 HOH A 86 886 38 HOH HOH . I 7 HOH A 87 887 97 HOH HOH . I 7 HOH A 88 888 242 HOH HOH . I 7 HOH A 89 889 179 HOH HOH . I 7 HOH A 90 890 208 HOH HOH . I 7 HOH A 91 891 78 HOH HOH . I 7 HOH A 92 892 89 HOH HOH . I 7 HOH A 93 893 167 HOH HOH . I 7 HOH A 94 894 51 HOH HOH . I 7 HOH A 95 895 72 HOH HOH . I 7 HOH A 96 896 21 HOH HOH . I 7 HOH A 97 897 79 HOH HOH . I 7 HOH A 98 898 24 HOH HOH . I 7 HOH A 99 899 201 HOH HOH . I 7 HOH A 100 900 114 HOH HOH . I 7 HOH A 101 901 56 HOH HOH . I 7 HOH A 102 902 8 HOH HOH . I 7 HOH A 103 903 185 HOH HOH . I 7 HOH A 104 904 184 HOH HOH . I 7 HOH A 105 905 205 HOH HOH . I 7 HOH A 106 906 217 HOH HOH . I 7 HOH A 107 907 214 HOH HOH . I 7 HOH A 108 908 175 HOH HOH . I 7 HOH A 109 909 221 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . D 4 41.653 77.992 26.599 1 31.73 ? PB ADP 703 A 1 HETATM 2 O O1B ADP . . . D 4 42.886 78.34 25.797 1 30.66 ? O1B ADP 703 A 1 HETATM 3 O O2B ADP . . . D 4 41.594 76.524 27.02 1 29.63 ? O2B ADP 703 A 1 HETATM 4 O O3B ADP . . . D 4 40.384 78.466 25.936 1 34.39 ? O3B ADP 703 A 1 HETATM 5 P PA ADP . . . D 4 42.861 79.38 28.88 1 30.59 ? PA ADP 703 A 1 HETATM 6 O O1A ADP . . . D 4 43.963 78.377 28.81 1 29.62 ? O1A ADP 703 A 1 HETATM 7 O O2A ADP . . . D 4 42.239 79.67 30.194 1 29.48 ? O2A ADP 703 A 1 HETATM 8 O O3A ADP . . . D 4 41.686 78.864 27.943 1 31.62 ? O3A ADP 703 A 1 HETATM 9 O O5' ADP . . . D 4 43.322 80.738 28.14 1 31.25 ? O5' ADP 703 A 1 HETATM 10 C C5' ADP . . . D 4 42.864 82.044 28.562 1 30.95 ? C5' ADP 703 A 1 HETATM 11 C C4' ADP . . . D 4 44.039 82.987 28.644 1 32.04 ? C4' ADP 703 A 1 HETATM 12 O O4' ADP . . . D 4 43.626 84.285 28.136 1 32.12 ? O4' ADP 703 A 1 HETATM 13 C C3' ADP . . . D 4 44.571 83.258 30.063 1 34.7 ? C3' ADP 703 A 1 HETATM 14 O O3' ADP . . . D 4 45.976 83.477 30.103 1 30.89 ? O3' ADP 703 A 1 HETATM 15 C C2' ADP . . . D 4 43.806 84.536 30.427 1 36.46 ? C2' ADP 703 A 1 HETATM 16 O O2' ADP . . . D 4 44.316 85.261 31.528 1 35.78 ? O2' ADP 703 A 1 HETATM 17 C C1' ADP . . . D 4 43.953 85.264 29.095 1 36.1 ? C1' ADP 703 A 1 HETATM 18 N N9 ADP . . . D 4 43.1 86.444 28.95 1 37.54 ? N9 ADP 703 A 1 HETATM 19 C C8 ADP . . . D 4 41.811 86.622 29.399 1 36.13 ? C8 ADP 703 A 1 HETATM 20 N N7 ADP . . . D 4 41.331 87.81 29.13 1 37.43 ? N7 ADP 703 A 1 HETATM 21 C C5 ADP . . . D 4 42.375 88.468 28.482 1 39.11 ? C5 ADP 703 A 1 HETATM 22 C C6 ADP . . . D 4 42.505 89.767 27.938 1 38.91 ? C6 ADP 703 A 1 HETATM 23 N N6 ADP . . . D 4 41.537 90.673 27.944 1 36.06 ? N6 ADP 703 A 1 HETATM 24 N N1 ADP . . . D 4 43.684 90.096 27.353 1 40.13 ? N1 ADP 703 A 1 HETATM 25 C C2 ADP . . . D 4 44.656 89.178 27.327 1 38.08 ? C2 ADP 703 A 1 HETATM 26 N N3 ADP . . . D 4 44.645 87.934 27.796 1 36.26 ? N3 ADP 703 A 1 HETATM 27 C C4 ADP . . . D 4 43.468 87.633 28.366 1 35.85 ? C4 ADP 703 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 27 #