data_6L6J # _model_server_result.job_id -ItGO5jZcN1wqwOLNiuwJQ _model_server_result.datetime_utc '2024-10-20 19:18:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6l6j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":707}' # _entry.id 6L6J # _exptl.entry_id 6L6J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 189.1 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRATE ANION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6L6J _cell.length_a 115.11 _cell.length_b 212.902 _cell.length_c 79.47 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6L6J _symmetry.cell_setting ? _symmetry.Int_Tables_number 21 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 344 A CYS 344 1_555 C FE2 SF4 . A SF4 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? metalc ? metalc2 A SG CYS 347 A CYS 347 1_555 C FE1 SF4 . A SF4 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc3 A SG CYS 350 A CYS 350 1_555 C FE4 SF4 . A SF4 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc4 A SG CYS 362 A CYS 362 1_555 C FE3 SF4 . A SF4 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? # _chem_comp.formula 'C6 H5 O7 -3' _chem_comp.formula_weight 189.1 _chem_comp.id FLC _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRATE ANION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAC CA FLC sing 127 n n CAC OA1 FLC doub 128 n n CAC OA2 FLC sing 129 n n CA CB FLC sing 130 n n CA HA1 FLC sing 131 n n CA HA2 FLC sing 132 n n CB CBC FLC sing 133 n n CB CG FLC sing 134 n n CB OHB FLC sing 135 n n CBC OB1 FLC doub 136 n n CBC OB2 FLC sing 137 n n CG CGC FLC sing 138 n n CG HG1 FLC sing 139 n n CG HG2 FLC sing 140 n n CGC OG1 FLC doub 141 n n CGC OG2 FLC sing 142 n n OHB HOB FLC sing 143 n n # _atom_sites.entry_id 6L6J _atom_sites.fract_transf_matrix[1][1] 0.008687 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004697 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012583 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 701 701 FMN FMN . C 3 SF4 A 1 702 801 SF4 SF4 . D 4 ADP A 1 703 901 ADP ADP . E 5 SO4 A 1 704 1 SO4 SO4 . F 5 SO4 A 1 705 2 SO4 SO4 . G 5 SO4 A 1 706 3 SO4 SO4 . H 6 FLC A 1 707 11 FLC FLC . I 7 HOH A 1 801 229 HOH HOH . I 7 HOH A 2 802 246 HOH HOH . I 7 HOH A 3 803 176 HOH HOH . I 7 HOH A 4 804 220 HOH HOH . I 7 HOH A 5 805 239 HOH HOH . I 7 HOH A 6 806 228 HOH HOH . I 7 HOH A 7 807 194 HOH HOH . I 7 HOH A 8 808 192 HOH HOH . I 7 HOH A 9 809 233 HOH HOH . I 7 HOH A 10 810 189 HOH HOH . I 7 HOH A 11 811 26 HOH HOH . I 7 HOH A 12 812 219 HOH HOH . I 7 HOH A 13 813 3 HOH HOH . I 7 HOH A 14 814 197 HOH HOH . I 7 HOH A 15 815 34 HOH HOH . I 7 HOH A 16 816 31 HOH HOH . I 7 HOH A 17 817 168 HOH HOH . I 7 HOH A 18 818 191 HOH HOH . I 7 HOH A 19 819 190 HOH HOH . I 7 HOH A 20 820 225 HOH HOH . I 7 HOH A 21 821 227 HOH HOH . I 7 HOH A 22 822 213 HOH HOH . I 7 HOH A 23 823 199 HOH HOH . I 7 HOH A 24 824 15 HOH HOH . I 7 HOH A 25 825 180 HOH HOH . I 7 HOH A 26 826 235 HOH HOH . I 7 HOH A 27 827 188 HOH HOH . I 7 HOH A 28 828 193 HOH HOH . I 7 HOH A 29 829 187 HOH HOH . I 7 HOH A 30 830 245 HOH HOH . I 7 HOH A 31 831 186 HOH HOH . I 7 HOH A 32 832 82 HOH HOH . I 7 HOH A 33 833 200 HOH HOH . I 7 HOH A 34 834 238 HOH HOH . I 7 HOH A 35 835 183 HOH HOH . I 7 HOH A 36 836 216 HOH HOH . I 7 HOH A 37 837 22 HOH HOH . I 7 HOH A 38 838 212 HOH HOH . I 7 HOH A 39 839 230 HOH HOH . I 7 HOH A 40 840 198 HOH HOH . I 7 HOH A 41 841 181 HOH HOH . I 7 HOH A 42 842 207 HOH HOH . I 7 HOH A 43 843 237 HOH HOH . I 7 HOH A 44 844 177 HOH HOH . I 7 HOH A 45 845 134 HOH HOH . I 7 HOH A 46 846 206 HOH HOH . I 7 HOH A 47 847 243 HOH HOH . I 7 HOH A 48 848 222 HOH HOH . I 7 HOH A 49 849 57 HOH HOH . I 7 HOH A 50 850 209 HOH HOH . I 7 HOH A 51 851 232 HOH HOH . I 7 HOH A 52 852 169 HOH HOH . I 7 HOH A 53 853 241 HOH HOH . I 7 HOH A 54 854 223 HOH HOH . I 7 HOH A 55 855 182 HOH HOH . I 7 HOH A 56 856 202 HOH HOH . I 7 HOH A 57 857 9 HOH HOH . I 7 HOH A 58 858 224 HOH HOH . I 7 HOH A 59 859 231 HOH HOH . I 7 HOH A 60 860 240 HOH HOH . I 7 HOH A 61 861 127 HOH HOH . I 7 HOH A 62 862 210 HOH HOH . I 7 HOH A 63 863 244 HOH HOH . I 7 HOH A 64 864 131 HOH HOH . I 7 HOH A 65 865 196 HOH HOH . I 7 HOH A 66 866 204 HOH HOH . I 7 HOH A 67 867 135 HOH HOH . I 7 HOH A 68 868 5 HOH HOH . I 7 HOH A 69 869 203 HOH HOH . I 7 HOH A 70 870 138 HOH HOH . I 7 HOH A 71 871 19 HOH HOH . I 7 HOH A 72 872 119 HOH HOH . I 7 HOH A 73 873 12 HOH HOH . I 7 HOH A 74 874 36 HOH HOH . I 7 HOH A 75 875 75 HOH HOH . I 7 HOH A 76 876 211 HOH HOH . I 7 HOH A 77 877 234 HOH HOH . I 7 HOH A 78 878 218 HOH HOH . I 7 HOH A 79 879 195 HOH HOH . I 7 HOH A 80 880 226 HOH HOH . I 7 HOH A 81 881 16 HOH HOH . I 7 HOH A 82 882 23 HOH HOH . I 7 HOH A 83 883 133 HOH HOH . I 7 HOH A 84 884 215 HOH HOH . I 7 HOH A 85 885 178 HOH HOH . I 7 HOH A 86 886 38 HOH HOH . I 7 HOH A 87 887 97 HOH HOH . I 7 HOH A 88 888 242 HOH HOH . I 7 HOH A 89 889 179 HOH HOH . I 7 HOH A 90 890 208 HOH HOH . I 7 HOH A 91 891 78 HOH HOH . I 7 HOH A 92 892 89 HOH HOH . I 7 HOH A 93 893 167 HOH HOH . I 7 HOH A 94 894 51 HOH HOH . I 7 HOH A 95 895 72 HOH HOH . I 7 HOH A 96 896 21 HOH HOH . I 7 HOH A 97 897 79 HOH HOH . I 7 HOH A 98 898 24 HOH HOH . I 7 HOH A 99 899 201 HOH HOH . I 7 HOH A 100 900 114 HOH HOH . I 7 HOH A 101 901 56 HOH HOH . I 7 HOH A 102 902 8 HOH HOH . I 7 HOH A 103 903 185 HOH HOH . I 7 HOH A 104 904 184 HOH HOH . I 7 HOH A 105 905 205 HOH HOH . I 7 HOH A 106 906 217 HOH HOH . I 7 HOH A 107 907 214 HOH HOH . I 7 HOH A 108 908 175 HOH HOH . I 7 HOH A 109 909 221 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAC FLC . . . H 6 54.295 62.286 41.029 1 66.07 ? CAC FLC 707 A 1 HETATM 2 C CA FLC . . . H 6 54.244 63.747 41.429 1 62.23 ? CA FLC 707 A 1 HETATM 3 C CB FLC . . . H 6 54.985 64.74 40.53 1 63.55 ? CB FLC 707 A 1 HETATM 4 C CBC FLC . . . H 6 55.369 66.005 41.377 1 72.03 ? CBC FLC 707 A 1 HETATM 5 C CG FLC . . . H 6 54.026 65.153 39.412 1 56.97 ? CG FLC 707 A 1 HETATM 6 C CGC FLC . . . H 6 54.661 65.68 38.155 1 51.2 ? CGC FLC 707 A 1 HETATM 7 O OA1 FLC . . . H 6 54.39 61.99 39.809 1 66.47 ? OA1 FLC 707 A 1 HETATM 8 O OA2 FLC . . . H 6 54.21 61.454 41.96 1 66.48 ? OA2 FLC 707 A 1 HETATM 9 O OB1 FLC . . . H 6 54.672 67.044 41.191 1 59.99 ? OB1 FLC 707 A 1 HETATM 10 O OB2 FLC . . . H 6 56.33 65.923 42.219 1 78.12 ? OB2 FLC 707 A 1 HETATM 11 O OG1 FLC . . . H 6 54.299 65.168 37.08 1 50.47 ? OG1 FLC 707 A 1 HETATM 12 O OG2 FLC . . . H 6 55.51 66.587 38.278 1 52.32 ? OG2 FLC 707 A 1 HETATM 13 O OHB FLC . . . H 6 56.111 64.105 39.94 1 66.54 ? OHB FLC 707 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 13 #