data_6L6N
#
_model_server_result.job_id            BNC1A1dxuTD8Xne8GYovTw 
_model_server_result.datetime_utc      '2025-03-26 07:20:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6l6n 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":502}' 
#
_entry.id    6L6N 
#
_exptl.entry_id    6L6N 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6L6N 
_cell.length_a            83.65 
_cell.length_b            142.71 
_cell.length_c            221.96 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6L6N 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
? 3 I N N 
? 3 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 83 A CYS 93 1_555 A SG CYS 184 A CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? 
disulf ? disulf2 A SG CYS 280 A CYS 290 1_555 A SG CYS 357 A CYS 367 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? 
disulf ? disulf3 A SG CYS 300 A CYS 310 1_555 A SG CYS 353 A CYS 363 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? 
disulf ? disulf4 A SG CYS 304 A CYS 314 1_555 A SG CYS 351 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? 
disulf ? disulf5 A SG CYS 313 A CYS 323 1_555 A SG CYS 335 A CYS 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? 
disulf ? disulf6 A SG CYS 315 A CYS 325 1_555 A SG CYS 327 A CYS 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? 
disulf ? disulf7 B SG CYS 83 B CYS 93 1_555 B SG CYS 184 B CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
disulf ? disulf8 B SG CYS 280 B CYS 290 1_555 B SG CYS 357 B CYS 367 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? 
disulf ? disulf9 B SG CYS 300 B CYS 310 1_555 B SG CYS 353 B CYS 363 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? 
disulf ? disulf10 B SG CYS 304 B CYS 314 1_555 B SG CYS 351 B CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? 
disulf ? disulf11 B SG CYS 313 B CYS 323 1_555 B SG CYS 335 B CYS 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? 
disulf ? disulf12 B SG CYS 315 B CYS 325 1_555 B SG CYS 327 B CYS 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? 
disulf ? disulf13 C SG CYS 83 C CYS 93 1_555 C SG CYS 184 C CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? 
disulf ? disulf14 C SG CYS 280 C CYS 290 1_555 C SG CYS 357 C CYS 367 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.752 ? 
disulf ? disulf15 C SG CYS 300 C CYS 310 1_555 C SG CYS 353 C CYS 363 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? 
disulf ? disulf16 C SG CYS 304 C CYS 314 1_555 C SG CYS 351 C CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? 
disulf ? disulf17 C SG CYS 313 C CYS 323 1_555 C SG CYS 335 C CYS 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? 
disulf ? disulf18 C SG CYS 315 C CYS 325 1_555 C SG CYS 327 C CYS 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? 
covale ? covale1 A ND2 ASN 385 A ASN 395 1_555 E C1 NAG . A NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.477 ? 
covale ? covale2 B ND2 ASN 358 B ASN 368 1_555 F C1 NAG . B NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.421 ? 
covale ? covale3 C ND2 ASN 358 C ASN 368 1_555 I C1 NAG . C NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.427 ? 
covale ? covale4 C ND2 ASN 385 C ASN 395 1_555 J C1 NAG . C NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 246 n n 
C1 O1 NAG sing 247 n n 
C1 O5 NAG sing 248 n n 
C1 H1 NAG sing 249 n n 
C2 C3 NAG sing 250 n n 
C2 N2 NAG sing 251 n n 
C2 H2 NAG sing 252 n n 
C3 C4 NAG sing 253 n n 
C3 O3 NAG sing 254 n n 
C3 H3 NAG sing 255 n n 
C4 C5 NAG sing 256 n n 
C4 O4 NAG sing 257 n n 
C4 H4 NAG sing 258 n n 
C5 C6 NAG sing 259 n n 
C5 O5 NAG sing 260 n n 
C5 H5 NAG sing 261 n n 
C6 O6 NAG sing 262 n n 
C6 H61 NAG sing 263 n n 
C6 H62 NAG sing 264 n n 
C7 C8 NAG sing 265 n n 
C7 N2 NAG sing 266 n n 
C7 O7 NAG doub 267 n n 
C8 H81 NAG sing 268 n n 
C8 H82 NAG sing 269 n n 
C8 H83 NAG sing 270 n n 
N2 HN2 NAG sing 271 n n 
O1 HO1 NAG sing 272 n n 
O3 HO3 NAG sing 273 n n 
O4 HO4 NAG sing 274 n n 
O6 HO6 NAG sing 275 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     6L6N 
_atom_sites.fract_transf_matrix[1][1]    0.011955 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007007 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004505 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 NDG A 1 501 450 NDG NAG . 
E 3 NAG A 1 502 451 NAG NAG . 
F 3 NAG B 1 501 450 NAG NAG . 
G 4 CL B 1 502 2 CL CL . 
H 5 EDO B 1 503 1 EDO EDO . 
I 3 NAG C 1 501 450 NAG NAG . 
J 3 NAG C 1 502 451 NAG NAG . 
K 4 CL C 1 503 1 CL CL . 
L 6 HOH A 1 601 39 HOH HOH . 
L 6 HOH A 2 602 31 HOH HOH . 
L 6 HOH A 3 603 20 HOH HOH . 
L 6 HOH A 4 604 17 HOH HOH . 
L 6 HOH A 5 605 1 HOH HOH . 
L 6 HOH A 6 606 40 HOH HOH . 
M 6 HOH B 1 601 15 HOH HOH . 
M 6 HOH B 2 602 16 HOH HOH . 
M 6 HOH B 3 603 13 HOH HOH . 
M 6 HOH B 4 604 29 HOH HOH . 
M 6 HOH B 5 605 23 HOH HOH . 
M 6 HOH B 6 606 26 HOH HOH . 
M 6 HOH B 7 607 21 HOH HOH . 
M 6 HOH B 8 608 2 HOH HOH . 
M 6 HOH B 9 609 33 HOH HOH . 
M 6 HOH B 10 610 41 HOH HOH . 
M 6 HOH B 11 611 25 HOH HOH . 
M 6 HOH B 12 612 28 HOH HOH . 
M 6 HOH B 13 613 14 HOH HOH . 
M 6 HOH B 14 614 18 HOH HOH . 
M 6 HOH B 15 615 10 HOH HOH . 
M 6 HOH B 16 616 36 HOH HOH . 
M 6 HOH B 17 617 35 HOH HOH . 
M 6 HOH B 18 618 3 HOH HOH . 
M 6 HOH B 19 619 12 HOH HOH . 
M 6 HOH B 20 620 42 HOH HOH . 
M 6 HOH B 21 621 11 HOH HOH . 
N 6 HOH C 1 601 19 HOH HOH . 
N 6 HOH C 2 602 9 HOH HOH . 
N 6 HOH C 3 603 30 HOH HOH . 
N 6 HOH C 4 604 24 HOH HOH . 
N 6 HOH C 5 605 27 HOH HOH . 
N 6 HOH C 6 606 34 HOH HOH . 
N 6 HOH C 7 607 22 HOH HOH . 
N 6 HOH C 8 608 5 HOH HOH . 
N 6 HOH C 9 609 7 HOH HOH . 
N 6 HOH C 10 610 43 HOH HOH . 
N 6 HOH C 11 611 6 HOH HOH . 
N 6 HOH C 12 612 32 HOH HOH . 
N 6 HOH C 13 613 4 HOH HOH . 
N 6 HOH C 14 614 8 HOH HOH . 
N 6 HOH C 15 615 38 HOH HOH . 
N 6 HOH C 16 616 37 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . J 3 -28.72 -30.603 65.06 1 150.41 ? C1 NAG 502 C 1 
HETATM 2 C C2 NAG . . . J 3 -28.421 -32.024 65.55 1 155.23 ? C2 NAG 502 C 1 
HETATM 3 C C3 NAG . . . J 3 -28.453 -32.093 67.095 1 159.64 ? C3 NAG 502 C 1 
HETATM 4 C C4 NAG . . . J 3 -27.746 -30.901 67.769 1 166.64 ? C4 NAG 502 C 1 
HETATM 5 C C5 NAG . . . J 3 -28.33 -29.587 67.212 1 164.18 ? C5 NAG 502 C 1 
HETATM 6 C C6 NAG . . . J 3 -27.805 -28.281 67.839 1 157.94 ? C6 NAG 502 C 1 
HETATM 7 C C7 NAG . . . J 3 -29.442 -33.339 63.696 1 154.19 ? C7 NAG 502 C 1 
HETATM 8 C C8 NAG . . . J 3 -30.731 -33.975 63.255 1 142.9 ? C8 NAG 502 C 1 
HETATM 9 N N2 NAG . . . J 3 -29.45 -32.875 64.958 1 162.86 ? N2 NAG 502 C 1 
HETATM 10 O O3 NAG . . . J 3 -27.881 -33.324 67.568 1 143.19 ? O3 NAG 502 C 1 
HETATM 11 O O4 NAG . . . J 3 -27.857 -31.025 69.202 1 159.92 ? O4 NAG 502 C 1 
HETATM 12 O O5 NAG . . . J 3 -28.021 -29.6 65.814 1 156.55 ? O5 NAG 502 C 1 
HETATM 13 O O6 NAG . . . J 3 -28.762 -27.21 67.704 1 149.68 ? O6 NAG 502 C 1 
HETATM 14 O O7 NAG . . . J 3 -28.496 -33.23 62.927 1 137.81 ? O7 NAG 502 C 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           24 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           276 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           14 
#