data_6L6R # _model_server_result.job_id I3vKd1_VjKbIX8Eq2FQVYg _model_server_result.datetime_utc '2024-11-14 17:10:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6l6r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":1001}' # _entry.id 6L6R # _exptl.entry_id 6L6R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 5 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6L6R _cell.length_a 252.792 _cell.length_b 252.792 _cell.length_c 86.286 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6L6R _symmetry.cell_setting ? _symmetry.Int_Tables_number 172 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,I,J,K,L 1 1 B,D,G,H,M,N,O 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 I N N ? 5 M N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 3 oligosaccharide 4 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 4 2 1 FUC NAG C1 O1 . O4 HO4 . sing 3 ? 4 3 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n E NAG 1 E 1 NAG A 1002 NAG 3 n E NAG 2 E 2 NAG A 1003 NAG 4 n F NAG 1 F 1 NAG A 1004 NAG 4 n F FUC 2 F 2 FUC A 1006 FUC 4 n F FUC 3 F 3 FUC A 1005 FUC 3 n G NAG 1 G 1 NAG B 1002 NAG 3 n G NAG 2 G 2 NAG B 1003 NAG 4 n H NAG 1 H 1 NAG B 1004 NAG 4 n H FUC 2 H 2 FUC B 1006 FUC 4 n H FUC 3 H 3 FUC B 1005 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 268 A CYS 286 1_555 A SG CYS 279 A CYS 297 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 A SG CYS 275 A CYS 293 1_555 A SG CYS 290 A CYS 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf3 A SG CYS 292 A CYS 310 1_555 A SG CYS 305 A CYS 323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 A SG CYS 574 A CYS 592 1_555 A SG CYS 585 A CYS 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 A SG CYS 581 A CYS 599 1_555 A SG CYS 594 A CYS 612 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf6 A SG CYS 596 A CYS 614 1_555 A SG CYS 609 A CYS 627 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf7 B SG CYS 268 B CYS 286 1_555 B SG CYS 279 B CYS 297 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf8 B SG CYS 275 B CYS 293 1_555 B SG CYS 290 B CYS 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf9 B SG CYS 292 B CYS 310 1_555 B SG CYS 305 B CYS 323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf10 B SG CYS 574 B CYS 592 1_555 B SG CYS 585 B CYS 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf11 B SG CYS 581 B CYS 599 1_555 B SG CYS 594 B CYS 612 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf12 B SG CYS 596 B CYS 614 1_555 B SG CYS 609 B CYS 627 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf13 C SG CYS 61 C CYS 80 1_555 C SG CYS 115 C CYS 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf14 C SG CYS 75 C CYS 94 1_555 C SG CYS 129 C CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf15 C SG CYS 86 C CYS 105 1_555 C SG CYS 146 C CYS 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf16 C SG CYS 90 C CYS 109 1_555 C SG CYS 148 C CYS 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf17 D SG CYS 61 D CYS 80 1_555 D SG CYS 115 D CYS 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf18 D SG CYS 75 D CYS 94 1_555 D SG CYS 129 D CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf19 D SG CYS 86 D CYS 105 1_555 D SG CYS 146 D CYS 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf20 D SG CYS 90 D CYS 109 1_555 D SG CYS 148 D CYS 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 A ND2 ASN 63 A ASN 81 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale2 A ND2 ASN 415 A ASN 433 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? covale ? covale3 A ND2 ASN 468 A ASN 486 1_555 I C1 NAG . A NAG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? covale ? covale4 B ND2 ASN 63 B ASN 81 1_555 H C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale5 B ND2 ASN 415 B ASN 433 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale6 B ND2 ASN 468 B ASN 486 1_555 M C1 NAG . B NAG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.464 ? covale ? covale7 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale8 F O4 NAG . F NAG 1 1_555 F C1 FUC . F FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale9 F O6 NAG . F NAG 1 1_555 F C1 FUC . F FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale10 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale11 H O4 NAG . H NAG 1 1_555 H C1 FUC . H FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale12 H O6 NAG . H NAG 1 1_555 H C1 FUC . H FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? metalc ? metalc1 A O LEU 82 A LEU 100 1_555 K MG MG . A MG 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.868 ? metalc ? metalc2 A O SER 96 A SER 114 1_555 J MG MG . A MG 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.805 ? metalc ? metalc3 A OD1 ASN 99 A ASN 117 1_555 J MG MG . A MG 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? metalc ? metalc4 A O ASP 120 A ASP 138 1_555 J MG MG . A MG 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? metalc ? metalc5 A O ILE 125 A ILE 143 1_555 K MG MG . A MG 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.778 ? metalc ? metalc6 B O SER 96 B SER 114 1_555 N MG MG . B MG 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.636 ? metalc ? metalc7 B OD1 ASN 99 B ASN 117 1_555 N MG MG . B MG 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.855 ? metalc ? metalc8 B O ASP 120 B ASP 138 1_555 N MG MG . B MG 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.614 ? metalc ? metalc9 B O ILE 125 B ILE 143 1_555 O MG MG . B MG 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 264 n n C1 O1 NAG sing 265 n n C1 O5 NAG sing 266 n n C1 H1 NAG sing 267 n n C2 C3 NAG sing 268 n n C2 N2 NAG sing 269 n n C2 H2 NAG sing 270 n n C3 C4 NAG sing 271 n n C3 O3 NAG sing 272 n n C3 H3 NAG sing 273 n n C4 C5 NAG sing 274 n n C4 O4 NAG sing 275 n n C4 H4 NAG sing 276 n n C5 C6 NAG sing 277 n n C5 O5 NAG sing 278 n n C5 H5 NAG sing 279 n n C6 O6 NAG sing 280 n n C6 H61 NAG sing 281 n n C6 H62 NAG sing 282 n n C7 C8 NAG sing 283 n n C7 N2 NAG sing 284 n n C7 O7 NAG doub 285 n n C8 H81 NAG sing 286 n n C8 H82 NAG sing 287 n n C8 H83 NAG sing 288 n n N2 HN2 NAG sing 289 n n O1 HO1 NAG sing 290 n n O3 HO3 NAG sing 291 n n O4 HO4 NAG sing 292 n n O6 HO6 NAG sing 293 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6L6R _atom_sites.fract_transf_matrix[1][1] 0.003956 _atom_sites.fract_transf_matrix[1][2] 0.002284 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004568 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011589 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 5 NAG A 1 1001 1001 NAG NAG . J 6 MG A 1 1007 2001 MG MG . K 6 MG A 1 1008 2002 MG MG . L 7 ACT A 1 1009 2003 ACT ACT . M 5 NAG B 1 1001 1001 NAG NAG . N 6 MG B 1 1007 2001 MG MG . O 6 MG B 1 1008 2002 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . M 5 23.246 368.642 -27.624 1 142.81 ? C1 NAG 1001 B 1 HETATM 2 C C2 NAG . . . M 5 22.847 369.003 -26.167 1 153.46 ? C2 NAG 1001 B 1 HETATM 3 C C3 NAG . . . M 5 21.711 370.042 -26.16 1 160.15 ? C3 NAG 1001 B 1 HETATM 4 C C4 NAG . . . M 5 22.033 371.229 -27.059 1 152.46 ? C4 NAG 1001 B 1 HETATM 5 C C5 NAG . . . M 5 22.363 370.733 -28.458 1 146.68 ? C5 NAG 1001 B 1 HETATM 6 C C6 NAG . . . M 5 22.732 371.844 -29.413 1 143.21 ? C6 NAG 1001 B 1 HETATM 7 C C7 NAG . . . M 5 22.168 367.792 -24.127 1 133.63 ? C7 NAG 1001 B 1 HETATM 8 C C8 NAG . . . M 5 21.761 366.466 -23.562 1 124.33 ? C8 NAG 1001 B 1 HETATM 9 N N2 NAG . . . M 5 22.441 367.811 -25.438 1 142.28 ? N2 NAG 1001 B 1 HETATM 10 O O3 NAG . . . M 5 21.472 370.506 -24.836 1 164.39 ? O3 NAG 1001 B 1 HETATM 11 O O4 NAG . . . M 5 20.924 372.119 -27.12 1 139.63 ? O4 NAG 1001 B 1 HETATM 12 O O5 NAG . . . M 5 23.492 369.855 -28.38 1 143.22 ? O5 NAG 1001 B 1 HETATM 13 O O6 NAG . . . M 5 23.31 372.948 -28.73 1 143 ? O6 NAG 1001 B 1 HETATM 14 O O7 NAG . . . M 5 22.246 368.799 -23.429 1 143.31 ? O7 NAG 1001 B 1 # _model_server_stats.io_time_ms 117 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 234 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 14 #