data_6L7O
#
_model_server_result.job_id            d6gPM1Mc1U3oimcjIRT7hA 
_model_server_result.datetime_utc      '2024-10-18 20:26:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6l7o 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"NC","auth_seq_id":301}' 
#
_entry.id    6L7O 
#
_exptl.entry_id    6L7O 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              351.64 
_entity.id                          27 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'IRON/SULFUR CLUSTER' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6L7O 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6L7O 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    eicosameric 
_pdbx_struct_assembly.oligomeric_count      20 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC,DC,EC,FC,GC,HC,IC,JC,KC,LC,MC,NC,OC,PC,QC,RC,SC,TC,UC,VC,WC,XC,YC 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 27 LC N N 
? 27 MC N N 
? 27 NC N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 I SG CYS 63 I CYS 63 1_555 MC FE3 SF4 . I SF4 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.69 ? 
metalc ? metalc2 I SG CYS 73 I CYS 73 1_555 LC FE4 SF4 . I SF4 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? 
metalc ? metalc3 I SG CYS 109 I CYS 109 1_555 LC FE3 SF4 . I SF4 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? 
metalc ? metalc4 K SG CYS 53 K CYS 53 1_555 NC FE2 SF4 . K SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.623 ? 
metalc ? metalc5 K SG CYS 117 K CYS 117 1_555 NC FE1 SF4 . K SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? 
metalc ? metalc6 K SG CYS 148 K CYS 148 1_555 NC FE4 SF4 . K SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.541 ? 
metalc ? metalc7 R OG1 THR 48 R THR 47 1_555 YC FE1 FES . R FES 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.793 ? 
#
_chem_comp.formula           'Fe4 S4' 
_chem_comp.formula_weight    351.64 
_chem_comp.id                SF4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'IRON/SULFUR CLUSTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
FE1 S2 SF4 sing 942 n n 
FE1 S3 SF4 sing 943 n n 
FE1 S4 SF4 sing 944 n n 
FE2 S1 SF4 sing 945 n n 
FE2 S3 SF4 sing 946 n n 
FE2 S4 SF4 sing 947 n n 
FE3 S1 SF4 sing 948 n n 
FE3 S2 SF4 sing 949 n n 
FE3 S4 SF4 sing 950 n n 
FE4 S1 SF4 sing 951 n n 
FE4 S2 SF4 sing 952 n n 
FE4 S3 SF4 sing 953 n n 
#
_atom_sites.entry_id                     6L7O 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
U 21 BCR A 1 401 103 BCR BCR . 
V 22 LHG A 1 402 104 LHG LHG . 
W 23 DGD A 1 403 101 DGD DGD . 
X 23 DGD A 1 404 102 DGD DGD . 
Y 24 AJP A 1 405 123 AJP AJG . 
Z 24 AJP A 1 406 124 AJP AJG . 
AA 24 AJP A 1 407 138 AJP AJG . 
BA 24 AJP A 1 408 151 AJP AJG . 
CA 24 AJP A 1 409 153 AJP AJG . 
DA 25 PQN B 1 601 101 PQN PQN . 
EA 22 LHG B 1 602 106 LHG LHG . 
FA 22 LHG B 1 603 107 LHG LHG . 
GA 22 LHG B 1 604 108 LHG LHG . 
HA 26 SQD B 1 605 103 SQD SQD . 
IA 24 AJP B 1 606 103 AJP AJG . 
JA 24 AJP B 1 607 104 AJP AJG . 
KA 24 AJP B 1 608 108 AJP AJG . 
LA 24 AJP B 1 609 111 AJP AJG . 
MA 24 AJP B 1 610 119 AJP AJG . 
NA 24 AJP B 1 611 127 AJP AJG . 
OA 24 AJP B 1 612 128 AJP AJG . 
PA 24 AJP B 1 613 129 AJP AJG . 
QA 24 AJP B 1 614 140 AJP AJG . 
RA 24 AJP B 1 615 141 AJP AJG . 
SA 24 AJP B 1 616 142 AJP AJG . 
TA 24 AJP B 1 617 152 AJP AJG . 
UA 24 AJP C 1 201 125 AJP AJG . 
VA 24 AJP C 1 202 126 AJP AJG . 
WA 22 LHG D 1 601 102 LHG LHG . 
XA 22 LHG D 1 602 103 LHG LHG . 
YA 24 AJP D 1 603 101 AJP AJG . 
ZA 24 AJP D 1 604 102 AJP AJG . 
AB 24 AJP D 1 605 107 AJP AJG . 
BB 24 AJP D 1 606 109 AJP AJG . 
CB 24 AJP D 1 607 110 AJP AJG . 
DB 24 AJP D 1 608 113 AJP AJG . 
EB 24 AJP D 1 609 120 AJP AJG . 
FB 24 AJP D 1 610 121 AJP AJG . 
GB 24 AJP D 1 611 130 AJP AJG . 
HB 24 AJP D 1 612 137 AJP AJG . 
IB 24 AJP D 1 613 154 AJP AJG . 
JB 24 AJP D 1 614 155 AJP AJG . 
KB 24 AJP E 1 201 160 AJP AJG . 
LB 21 BCR F 1 701 102 BCR BCR . 
MB 22 LHG F 1 702 105 LHG LHG . 
NB 22 LHG F 1 703 109 LHG LHG . 
OB 26 SQD F 1 704 101 SQD SQD . 
PB 26 SQD F 1 705 102 SQD SQD . 
QB 24 AJP F 1 706 105 AJP AJG . 
RB 24 AJP F 1 707 106 AJP AJG . 
SB 24 AJP F 1 708 112 AJP AJG . 
TB 24 AJP F 1 709 115 AJP AJG . 
UB 24 AJP F 1 710 116 AJP AJG . 
VB 24 AJP F 1 711 136 AJP AJG . 
WB 24 AJP F 1 712 139 AJP AJG . 
XB 24 AJP F 1 713 143 AJP AJG . 
YB 24 AJP F 1 714 144 AJP AJG . 
ZB 24 AJP F 1 715 148 AJP AJG . 
AC 24 AJP F 1 716 149 AJP AJG . 
BC 24 AJP F 1 717 150 AJP AJG . 
CC 24 AJP F 1 718 158 AJP AJG . 
DC 24 AJP G 1 301 122 AJP AJG . 
EC 24 AJP G 1 302 131 AJP AJG . 
FC 24 AJP G 1 303 132 AJP AJG . 
GC 24 AJP G 1 304 133 AJP AJG . 
HC 24 AJP G 1 305 134 AJP AJG . 
IC 24 AJP G 1 306 135 AJP AJG . 
JC 24 AJP G 1 307 159 AJP AJG . 
KC 22 LHG H 1 401 101 LHG LHG . 
LC 27 SF4 I 1 201 201 SF4 SF4 . 
MC 27 SF4 I 1 202 202 SF4 SF4 . 
NC 27 SF4 K 1 301 301 SF4 SF4 . 
OC 26 SQD L 1 101 104 SQD SQD . 
PC 21 BCR P 1 101 101 BCR BCR . 
QC 24 AJP Q 1 101 114 AJP AJG . 
RC 24 AJP Q 1 102 117 AJP AJG . 
SC 24 AJP Q 1 103 118 AJP AJG . 
TC 24 AJP Q 1 104 145 AJP AJG . 
UC 24 AJP Q 1 105 146 AJP AJG . 
VC 24 AJP Q 1 106 147 AJP AJG . 
WC 24 AJP Q 1 107 156 AJP AJG . 
XC 24 AJP Q 1 108 157 AJP AJG . 
YC 28 FES R 1 101 101 FES FES . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 FE FE1 SF4 . . . NC 27 87.829 134.287 130.026 1 75.86 ? FE1 SF4 301 K 1 
HETATM 2 FE FE2 SF4 . . . NC 27 88.337 136.165 128.164 1 75.86 ? FE2 SF4 301 K 1 
HETATM 3 FE FE3 SF4 . . . NC 27 89.643 133.818 127.989 1 75.86 ? FE3 SF4 301 K 1 
HETATM 4 FE FE4 SF4 . . . NC 27 86.94 133.876 127.577 1 75.86 ? FE4 SF4 301 K 1 
HETATM 5 S S1 SF4 . . . NC 27 88.53 134.882 126.274 1 75.86 ? S1 SF4 301 K 1 
HETATM 6 S S2 SF4 . . . NC 27 88.127 132.333 128.81 1 75.86 ? S2 SF4 301 K 1 
HETATM 7 S S3 SF4 . . . NC 27 86.255 135.582 128.97 1 75.86 ? S3 SF4 301 K 1 
HETATM 8 S S4 SF4 . . . NC 27 89.846 135.339 129.701 1 75.86 ? S4 SF4 301 K 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    53 
_model_server_stats.query_time_ms           372 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           8 
#