data_6L7O
#
_model_server_result.job_id            Sg2mJsosd1PS2Nl7sbvuow 
_model_server_result.datetime_utc      '2024-10-18 20:27:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6l7o 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"DA","auth_seq_id":601}' 
#
_entry.id    6L7O 
#
_exptl.entry_id    6L7O 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              450.696 
_entity.id                          25 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            PHYLLOQUINONE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6L7O 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6L7O 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    eicosameric 
_pdbx_struct_assembly.oligomeric_count      20 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC,DC,EC,FC,GC,HC,IC,JC,KC,LC,MC,NC,OC,PC,QC,RC,SC,TC,UC,VC,WC,XC,YC 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      25 
_struct_asym.id                             DA 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 I SG CYS 63 I CYS 63 1_555 MC FE3 SF4 . I SF4 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.69 ? 
metalc ? metalc2 I SG CYS 73 I CYS 73 1_555 LC FE4 SF4 . I SF4 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? 
metalc ? metalc3 I SG CYS 109 I CYS 109 1_555 LC FE3 SF4 . I SF4 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? 
metalc ? metalc4 K SG CYS 53 K CYS 53 1_555 NC FE2 SF4 . K SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.623 ? 
metalc ? metalc5 K SG CYS 117 K CYS 117 1_555 NC FE1 SF4 . K SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? 
metalc ? metalc6 K SG CYS 148 K CYS 148 1_555 NC FE4 SF4 . K SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.541 ? 
metalc ? metalc7 R OG1 THR 48 R THR 47 1_555 YC FE1 FES . R FES 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.793 ? 
#
_chem_comp.formula           'C31 H46 O2' 
_chem_comp.formula_weight    450.696 
_chem_comp.id                PQN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              PHYLLOQUINONE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'VITAMIN K1;2-METHYL-3-PHYTYL-1,4-NAPHTHOQUINONE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 PQN doub 832 n n 
C1 C2 PQN sing 833 n n 
C1 C10 PQN sing 834 n n 
C2 C2M PQN sing 835 n n 
C2 C3 PQN doub 836 n n 
C2M H2M1 PQN sing 837 n n 
C2M H2M2 PQN sing 838 n n 
C2M H2M3 PQN sing 839 n n 
C3 C4 PQN sing 840 n n 
C3 C11 PQN sing 841 n n 
C4 O4 PQN doub 842 n n 
C4 C5 PQN sing 843 n n 
C5 C6 PQN doub 844 n y 
C5 C10 PQN sing 845 n y 
C6 C7 PQN sing 846 n y 
C6 H6 PQN sing 847 n n 
C7 C8 PQN doub 848 n y 
C7 H7 PQN sing 849 n n 
C8 C9 PQN sing 850 n y 
C8 H8 PQN sing 851 n n 
C9 C10 PQN doub 852 n y 
C9 H9 PQN sing 853 n n 
C11 C12 PQN sing 854 n n 
C11 H111 PQN sing 855 n n 
C11 H112 PQN sing 856 n n 
C12 C13 PQN doub 857 e n 
C12 H12 PQN sing 858 n n 
C13 C14 PQN sing 859 n n 
C13 C15 PQN sing 860 n n 
C14 H141 PQN sing 861 n n 
C14 H142 PQN sing 862 n n 
C14 H143 PQN sing 863 n n 
C15 C16 PQN sing 864 n n 
C15 H151 PQN sing 865 n n 
C15 H152 PQN sing 866 n n 
C16 C17 PQN sing 867 n n 
C16 H161 PQN sing 868 n n 
C16 H162 PQN sing 869 n n 
C17 C18 PQN sing 870 n n 
C17 H171 PQN sing 871 n n 
C17 H172 PQN sing 872 n n 
C18 C19 PQN sing 873 n n 
C18 C20 PQN sing 874 n n 
C18 H18 PQN sing 875 n n 
C19 H191 PQN sing 876 n n 
C19 H192 PQN sing 877 n n 
C19 H193 PQN sing 878 n n 
C20 C21 PQN sing 879 n n 
C20 H201 PQN sing 880 n n 
C20 H202 PQN sing 881 n n 
C21 C22 PQN sing 882 n n 
C21 H211 PQN sing 883 n n 
C21 H212 PQN sing 884 n n 
C22 C23 PQN sing 885 n n 
C22 H221 PQN sing 886 n n 
C22 H222 PQN sing 887 n n 
C23 C24 PQN sing 888 n n 
C23 C25 PQN sing 889 n n 
C23 H23 PQN sing 890 n n 
C24 H241 PQN sing 891 n n 
C24 H242 PQN sing 892 n n 
C24 H243 PQN sing 893 n n 
C25 C26 PQN sing 894 n n 
C25 H251 PQN sing 895 n n 
C25 H252 PQN sing 896 n n 
C26 C27 PQN sing 897 n n 
C26 H261 PQN sing 898 n n 
C26 H262 PQN sing 899 n n 
C27 C28 PQN sing 900 n n 
C27 H271 PQN sing 901 n n 
C27 H272 PQN sing 902 n n 
C28 C29 PQN sing 903 n n 
C28 C30 PQN sing 904 n n 
C28 H28 PQN sing 905 n n 
C29 H291 PQN sing 906 n n 
C29 H292 PQN sing 907 n n 
C29 H293 PQN sing 908 n n 
C30 H301 PQN sing 909 n n 
C30 H302 PQN sing 910 n n 
C30 H303 PQN sing 911 n n 
#
_atom_sites.entry_id                     6L7O 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
U 21 BCR A 1 401 103 BCR BCR . 
V 22 LHG A 1 402 104 LHG LHG . 
W 23 DGD A 1 403 101 DGD DGD . 
X 23 DGD A 1 404 102 DGD DGD . 
Y 24 AJP A 1 405 123 AJP AJG . 
Z 24 AJP A 1 406 124 AJP AJG . 
AA 24 AJP A 1 407 138 AJP AJG . 
BA 24 AJP A 1 408 151 AJP AJG . 
CA 24 AJP A 1 409 153 AJP AJG . 
DA 25 PQN B 1 601 101 PQN PQN . 
EA 22 LHG B 1 602 106 LHG LHG . 
FA 22 LHG B 1 603 107 LHG LHG . 
GA 22 LHG B 1 604 108 LHG LHG . 
HA 26 SQD B 1 605 103 SQD SQD . 
IA 24 AJP B 1 606 103 AJP AJG . 
JA 24 AJP B 1 607 104 AJP AJG . 
KA 24 AJP B 1 608 108 AJP AJG . 
LA 24 AJP B 1 609 111 AJP AJG . 
MA 24 AJP B 1 610 119 AJP AJG . 
NA 24 AJP B 1 611 127 AJP AJG . 
OA 24 AJP B 1 612 128 AJP AJG . 
PA 24 AJP B 1 613 129 AJP AJG . 
QA 24 AJP B 1 614 140 AJP AJG . 
RA 24 AJP B 1 615 141 AJP AJG . 
SA 24 AJP B 1 616 142 AJP AJG . 
TA 24 AJP B 1 617 152 AJP AJG . 
UA 24 AJP C 1 201 125 AJP AJG . 
VA 24 AJP C 1 202 126 AJP AJG . 
WA 22 LHG D 1 601 102 LHG LHG . 
XA 22 LHG D 1 602 103 LHG LHG . 
YA 24 AJP D 1 603 101 AJP AJG . 
ZA 24 AJP D 1 604 102 AJP AJG . 
AB 24 AJP D 1 605 107 AJP AJG . 
BB 24 AJP D 1 606 109 AJP AJG . 
CB 24 AJP D 1 607 110 AJP AJG . 
DB 24 AJP D 1 608 113 AJP AJG . 
EB 24 AJP D 1 609 120 AJP AJG . 
FB 24 AJP D 1 610 121 AJP AJG . 
GB 24 AJP D 1 611 130 AJP AJG . 
HB 24 AJP D 1 612 137 AJP AJG . 
IB 24 AJP D 1 613 154 AJP AJG . 
JB 24 AJP D 1 614 155 AJP AJG . 
KB 24 AJP E 1 201 160 AJP AJG . 
LB 21 BCR F 1 701 102 BCR BCR . 
MB 22 LHG F 1 702 105 LHG LHG . 
NB 22 LHG F 1 703 109 LHG LHG . 
OB 26 SQD F 1 704 101 SQD SQD . 
PB 26 SQD F 1 705 102 SQD SQD . 
QB 24 AJP F 1 706 105 AJP AJG . 
RB 24 AJP F 1 707 106 AJP AJG . 
SB 24 AJP F 1 708 112 AJP AJG . 
TB 24 AJP F 1 709 115 AJP AJG . 
UB 24 AJP F 1 710 116 AJP AJG . 
VB 24 AJP F 1 711 136 AJP AJG . 
WB 24 AJP F 1 712 139 AJP AJG . 
XB 24 AJP F 1 713 143 AJP AJG . 
YB 24 AJP F 1 714 144 AJP AJG . 
ZB 24 AJP F 1 715 148 AJP AJG . 
AC 24 AJP F 1 716 149 AJP AJG . 
BC 24 AJP F 1 717 150 AJP AJG . 
CC 24 AJP F 1 718 158 AJP AJG . 
DC 24 AJP G 1 301 122 AJP AJG . 
EC 24 AJP G 1 302 131 AJP AJG . 
FC 24 AJP G 1 303 132 AJP AJG . 
GC 24 AJP G 1 304 133 AJP AJG . 
HC 24 AJP G 1 305 134 AJP AJG . 
IC 24 AJP G 1 306 135 AJP AJG . 
JC 24 AJP G 1 307 159 AJP AJG . 
KC 22 LHG H 1 401 101 LHG LHG . 
LC 27 SF4 I 1 201 201 SF4 SF4 . 
MC 27 SF4 I 1 202 202 SF4 SF4 . 
NC 27 SF4 K 1 301 301 SF4 SF4 . 
OC 26 SQD L 1 101 104 SQD SQD . 
PC 21 BCR P 1 101 101 BCR BCR . 
QC 24 AJP Q 1 101 114 AJP AJG . 
RC 24 AJP Q 1 102 117 AJP AJG . 
SC 24 AJP Q 1 103 118 AJP AJG . 
TC 24 AJP Q 1 104 145 AJP AJG . 
UC 24 AJP Q 1 105 146 AJP AJG . 
VC 24 AJP Q 1 106 147 AJP AJG . 
WC 24 AJP Q 1 107 156 AJP AJG . 
XC 24 AJP Q 1 108 157 AJP AJG . 
YC 28 FES R 1 101 101 FES FES . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PQN . . . DA 25 170.433 139.631 138.247 1 57.79 ? C1 PQN 601 B 1 
HETATM 2 O O1 PQN . . . DA 25 169.118 139.317 138.607 1 57.79 ? O1 PQN 601 B 1 
HETATM 3 C C2 PQN . . . DA 25 170.689 140.74 137.457 1 57.79 ? C2 PQN 601 B 1 
HETATM 4 C C2M PQN . . . DA 25 169.533 141.616 136.986 1 57.79 ? C2M PQN 601 B 1 
HETATM 5 C C3 PQN . . . DA 25 172.001 141.057 137.098 1 57.79 ? C3 PQN 601 B 1 
HETATM 6 C C4 PQN . . . DA 25 173.05 140.254 137.531 1 57.79 ? C4 PQN 601 B 1 
HETATM 7 O O4 PQN . . . DA 25 174.371 140.556 137.177 1 57.79 ? O4 PQN 601 B 1 
HETATM 8 C C5 PQN . . . DA 25 172.786 139.116 138.34 1 57.79 ? C5 PQN 601 B 1 
HETATM 9 C C6 PQN . . . DA 25 173.862 138.295 138.784 1 57.79 ? C6 PQN 601 B 1 
HETATM 10 C C7 PQN . . . DA 25 173.606 137.183 139.574 1 57.79 ? C7 PQN 601 B 1 
HETATM 11 C C8 PQN . . . DA 25 172.295 136.869 139.934 1 57.79 ? C8 PQN 601 B 1 
HETATM 12 C C9 PQN . . . DA 25 171.244 137.67 139.501 1 57.79 ? C9 PQN 601 B 1 
HETATM 13 C C10 PQN . . . DA 25 171.507 138.81 138.691 1 57.79 ? C10 PQN 601 B 1 
HETATM 14 C C11 PQN . . . DA 25 172.271 142.281 136.229 1 57.79 ? C11 PQN 601 B 1 
HETATM 15 C C12 PQN . . . DA 25 173.021 143.376 136.984 1 57.79 ? C12 PQN 601 B 1 
HETATM 16 C C13 PQN . . . DA 25 172.648 144.778 136.521 1 57.79 ? C13 PQN 601 B 1 
HETATM 17 C C14 PQN . . . DA 25 171.144 144.98 136.686 1 57.79 ? C14 PQN 601 B 1 
HETATM 18 C C15 PQN . . . DA 25 173.402 145.802 137.374 1 57.79 ? C15 PQN 601 B 1 
HETATM 19 C C16 PQN . . . DA 25 172.88 147.227 137.194 1 57.79 ? C16 PQN 601 B 1 
HETATM 20 C C17 PQN . . . DA 25 173.587 148.22 138.126 1 57.79 ? C17 PQN 601 B 1 
HETATM 21 C C18 PQN . . . DA 25 173.311 149.677 137.752 1 57.79 ? C18 PQN 601 B 1 
HETATM 22 C C19 PQN . . . DA 25 173.667 149.896 136.288 1 57.79 ? C19 PQN 601 B 1 
HETATM 23 C C20 PQN . . . DA 25 174.149 150.595 138.656 1 57.79 ? C20 PQN 601 B 1 
HETATM 24 C C21 PQN . . . DA 25 174.65 151.87 137.952 1 57.79 ? C21 PQN 601 B 1 
HETATM 25 C C22 PQN . . . DA 25 175.522 152.744 138.871 1 57.79 ? C22 PQN 601 B 1 
HETATM 26 C C23 PQN . . . DA 25 174.776 153.988 139.367 1 57.79 ? C23 PQN 601 B 1 
HETATM 27 C C24 PQN . . . DA 25 174.811 155.061 138.288 1 57.79 ? C24 PQN 601 B 1 
HETATM 28 C C25 PQN . . . DA 25 175.446 154.521 140.633 1 57.79 ? C25 PQN 601 B 1 
HETATM 29 C C26 PQN . . . DA 25 174.651 155.665 141.267 1 57.79 ? C26 PQN 601 B 1 
HETATM 30 C C27 PQN . . . DA 25 175.127 155.996 142.685 1 57.79 ? C27 PQN 601 B 1 
HETATM 31 C C28 PQN . . . DA 25 174.249 157.023 143.408 1 57.79 ? C28 PQN 601 B 1 
HETATM 32 C C29 PQN . . . DA 25 173.283 157.744 142.464 1 57.79 ? C29 PQN 601 B 1 
HETATM 33 C C30 PQN . . . DA 25 173.503 156.384 144.583 1 57.79 ? C30 PQN 601 B 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    34 
_model_server_stats.query_time_ms           298 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           33 
#