data_6L7P # _model_server_result.job_id G7wDkoSIrKwwVddz8jQtsg _model_server_result.datetime_utc '2024-11-05 07:47:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6l7p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"ZB","auth_seq_id":201}' # _entry.id 6L7P # _exptl.entry_id 6L7P _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 351.64 _entity.id 25 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'IRON/SULFUR CLUSTER' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6L7P _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6L7P _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octadecameric _pdbx_struct_assembly.oligomeric_count 18 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC,DC,EC,FC _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 25 ZB N N ? 25 AC N N ? 25 BC N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 I SG CYS 66 I CYS 66 1_555 AC FE4 SF4 . I SF4 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? metalc ? metalc2 I SG CYS 73 I CYS 73 1_555 ZB FE4 SF4 . I SF4 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc3 I SG CYS 103 I CYS 103 1_555 ZB FE2 SF4 . I SF4 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.697 ? metalc ? metalc4 I SG CYS 109 I CYS 109 1_555 ZB FE3 SF4 . I SF4 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? metalc ? metalc5 K SG CYS 53 K CYS 53 1_555 BC FE2 SF4 . K SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.535 ? metalc ? metalc6 K SG CYS 117 K CYS 117 1_555 BC FE1 SF4 . K SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc7 K SG CYS 148 K CYS 148 1_555 BC FE4 SF4 . K SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.659 ? # _chem_comp.formula 'Fe4 S4' _chem_comp.formula_weight 351.64 _chem_comp.id SF4 _chem_comp.mon_nstd_flag . _chem_comp.name 'IRON/SULFUR CLUSTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE1 S2 SF4 sing 938 n n FE1 S3 SF4 sing 939 n n FE1 S4 SF4 sing 940 n n FE2 S1 SF4 sing 941 n n FE2 S3 SF4 sing 942 n n FE2 S4 SF4 sing 943 n n FE3 S1 SF4 sing 944 n n FE3 S2 SF4 sing 945 n n FE3 S4 SF4 sing 946 n n FE4 S1 SF4 sing 947 n n FE4 S2 SF4 sing 948 n n FE4 S3 SF4 sing 949 n n # _atom_sites.entry_id 6L7P _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code S 19 BCR A 1 401 103 BCR BCR . T 20 LHG A 1 402 101 LHG LHG . U 20 LHG A 1 403 104 LHG LHG . V 21 DGD A 1 404 101 DGD DGD . W 21 DGD A 1 405 102 DGD DGD . X 22 AJP A 1 406 123 AJP AJG . Y 22 AJP A 1 407 124 AJP AJG . Z 22 AJP A 1 408 138 AJP AJG . AA 23 PQN B 1 601 101 PQN PQN . BA 20 LHG B 1 602 106 LHG LHG . CA 20 LHG B 1 603 108 LHG LHG . DA 22 AJP B 1 604 103 AJP AJG . EA 22 AJP B 1 605 104 AJP AJG . FA 22 AJP B 1 606 108 AJP AJG . GA 22 AJP B 1 607 111 AJP AJG . HA 22 AJP B 1 608 119 AJP AJG . IA 22 AJP B 1 609 127 AJP AJG . JA 22 AJP B 1 610 128 AJP AJG . KA 22 AJP B 1 611 129 AJP AJG . LA 22 AJP B 1 612 140 AJP AJG . MA 22 AJP B 1 613 141 AJP AJG . NA 22 AJP B 1 614 142 AJP AJG . OA 22 AJP C 1 201 125 AJP AJG . PA 22 AJP C 1 202 126 AJP AJG . QA 19 BCR D 1 601 101 BCR BCR . RA 19 BCR D 1 602 102 BCR BCR . SA 20 LHG D 1 603 102 LHG LHG . TA 20 LHG D 1 604 103 LHG LHG . UA 24 SQD D 1 605 102 SQD SQD . VA 24 SQD D 1 606 103 SQD SQD . WA 22 AJP D 1 607 101 AJP AJG . XA 22 AJP D 1 608 102 AJP AJG . YA 22 AJP D 1 609 107 AJP AJG . ZA 22 AJP D 1 610 109 AJP AJG . AB 22 AJP D 1 611 110 AJP AJG . BB 22 AJP D 1 612 113 AJP AJG . CB 22 AJP D 1 613 120 AJP AJG . DB 22 AJP D 1 614 121 AJP AJG . EB 22 AJP D 1 615 130 AJP AJG . FB 22 AJP D 1 616 137 AJP AJG . GB 20 LHG F 1 701 105 LHG LHG . HB 20 LHG F 1 702 109 LHG LHG . IB 24 SQD F 1 703 101 SQD SQD . JB 22 AJP F 1 704 105 AJP AJG . KB 22 AJP F 1 705 106 AJP AJG . LB 22 AJP F 1 706 112 AJP AJG . MB 22 AJP F 1 707 115 AJP AJG . NB 22 AJP F 1 708 116 AJP AJG . OB 22 AJP F 1 709 136 AJP AJG . PB 22 AJP F 1 710 139 AJP AJG . QB 22 AJP F 1 711 143 AJP AJG . RB 22 AJP F 1 712 144 AJP AJG . SB 20 LHG G 1 301 107 LHG LHG . TB 22 AJP G 1 302 122 AJP AJG . UB 22 AJP G 1 303 131 AJP AJG . VB 22 AJP G 1 304 132 AJP AJG . WB 22 AJP G 1 305 133 AJP AJG . XB 22 AJP G 1 306 134 AJP AJG . YB 22 AJP G 1 307 135 AJP AJG . ZB 25 SF4 I 1 201 201 SF4 SF4 . AC 25 SF4 I 1 202 202 SF4 SF4 . BC 25 SF4 K 1 301 301 SF4 SF4 . CC 24 SQD L 1 101 104 SQD SQD . DC 22 AJP Q 1 101 114 AJP AJG . EC 22 AJP Q 1 102 117 AJP AJG . FC 22 AJP Q 1 103 118 AJP AJG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE1 SF4 . . . ZB 25 75.696 125.486 126.357 1 67.08 ? FE1 SF4 201 I 1 HETATM 2 FE FE2 SF4 . . . ZB 25 74.52 127.789 127.223 1 67.08 ? FE2 SF4 201 I 1 HETATM 3 FE FE3 SF4 . . . ZB 25 73.107 125.807 125.94 1 67.08 ? FE3 SF4 201 I 1 HETATM 4 FE FE4 SF4 . . . ZB 25 74.092 125.329 128.49 1 67.08 ? FE4 SF4 201 I 1 HETATM 5 S S1 SF4 . . . ZB 25 72.503 126.898 127.902 1 67.08 ? S1 SF4 201 I 1 HETATM 6 S S2 SF4 . . . ZB 25 74.095 123.873 126.695 1 67.08 ? S2 SF4 201 I 1 HETATM 7 S S3 SF4 . . . ZB 25 76.041 126.535 128.393 1 67.08 ? S3 SF4 201 I 1 HETATM 8 S S4 SF4 . . . ZB 25 74.768 127.129 125.046 1 67.08 ? S4 SF4 201 I 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 47 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 8 #