data_6L7P
#
_model_server_result.job_id            cNjcb8cfP4w5bT2S453Aww 
_model_server_result.datetime_utc      '2024-11-05 08:06:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6l7p 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"AA","auth_seq_id":601}' 
#
_entry.id    6L7P 
#
_exptl.entry_id    6L7P 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              450.696 
_entity.id                          23 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            PHYLLOQUINONE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6L7P 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6L7P 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    octadecameric 
_pdbx_struct_assembly.oligomeric_count      18 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC,DC,EC,FC 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      23 
_struct_asym.id                             AA 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 I SG CYS 66 I CYS 66 1_555 AC FE4 SF4 . I SF4 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? 
metalc ? metalc2 I SG CYS 73 I CYS 73 1_555 ZB FE4 SF4 . I SF4 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? 
metalc ? metalc3 I SG CYS 103 I CYS 103 1_555 ZB FE2 SF4 . I SF4 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.697 ? 
metalc ? metalc4 I SG CYS 109 I CYS 109 1_555 ZB FE3 SF4 . I SF4 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? 
metalc ? metalc5 K SG CYS 53 K CYS 53 1_555 BC FE2 SF4 . K SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.535 ? 
metalc ? metalc6 K SG CYS 117 K CYS 117 1_555 BC FE1 SF4 . K SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? 
metalc ? metalc7 K SG CYS 148 K CYS 148 1_555 BC FE4 SF4 . K SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.659 ? 
#
_chem_comp.formula           'C31 H46 O2' 
_chem_comp.formula_weight    450.696 
_chem_comp.id                PQN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              PHYLLOQUINONE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'VITAMIN K1;2-METHYL-3-PHYTYL-1,4-NAPHTHOQUINONE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 PQN doub 828 n n 
C1 C2 PQN sing 829 n n 
C1 C10 PQN sing 830 n n 
C2 C2M PQN sing 831 n n 
C2 C3 PQN doub 832 n n 
C2M H2M1 PQN sing 833 n n 
C2M H2M2 PQN sing 834 n n 
C2M H2M3 PQN sing 835 n n 
C3 C4 PQN sing 836 n n 
C3 C11 PQN sing 837 n n 
C4 O4 PQN doub 838 n n 
C4 C5 PQN sing 839 n n 
C5 C6 PQN doub 840 n y 
C5 C10 PQN sing 841 n y 
C6 C7 PQN sing 842 n y 
C6 H6 PQN sing 843 n n 
C7 C8 PQN doub 844 n y 
C7 H7 PQN sing 845 n n 
C8 C9 PQN sing 846 n y 
C8 H8 PQN sing 847 n n 
C9 C10 PQN doub 848 n y 
C9 H9 PQN sing 849 n n 
C11 C12 PQN sing 850 n n 
C11 H111 PQN sing 851 n n 
C11 H112 PQN sing 852 n n 
C12 C13 PQN doub 853 e n 
C12 H12 PQN sing 854 n n 
C13 C14 PQN sing 855 n n 
C13 C15 PQN sing 856 n n 
C14 H141 PQN sing 857 n n 
C14 H142 PQN sing 858 n n 
C14 H143 PQN sing 859 n n 
C15 C16 PQN sing 860 n n 
C15 H151 PQN sing 861 n n 
C15 H152 PQN sing 862 n n 
C16 C17 PQN sing 863 n n 
C16 H161 PQN sing 864 n n 
C16 H162 PQN sing 865 n n 
C17 C18 PQN sing 866 n n 
C17 H171 PQN sing 867 n n 
C17 H172 PQN sing 868 n n 
C18 C19 PQN sing 869 n n 
C18 C20 PQN sing 870 n n 
C18 H18 PQN sing 871 n n 
C19 H191 PQN sing 872 n n 
C19 H192 PQN sing 873 n n 
C19 H193 PQN sing 874 n n 
C20 C21 PQN sing 875 n n 
C20 H201 PQN sing 876 n n 
C20 H202 PQN sing 877 n n 
C21 C22 PQN sing 878 n n 
C21 H211 PQN sing 879 n n 
C21 H212 PQN sing 880 n n 
C22 C23 PQN sing 881 n n 
C22 H221 PQN sing 882 n n 
C22 H222 PQN sing 883 n n 
C23 C24 PQN sing 884 n n 
C23 C25 PQN sing 885 n n 
C23 H23 PQN sing 886 n n 
C24 H241 PQN sing 887 n n 
C24 H242 PQN sing 888 n n 
C24 H243 PQN sing 889 n n 
C25 C26 PQN sing 890 n n 
C25 H251 PQN sing 891 n n 
C25 H252 PQN sing 892 n n 
C26 C27 PQN sing 893 n n 
C26 H261 PQN sing 894 n n 
C26 H262 PQN sing 895 n n 
C27 C28 PQN sing 896 n n 
C27 H271 PQN sing 897 n n 
C27 H272 PQN sing 898 n n 
C28 C29 PQN sing 899 n n 
C28 C30 PQN sing 900 n n 
C28 H28 PQN sing 901 n n 
C29 H291 PQN sing 902 n n 
C29 H292 PQN sing 903 n n 
C29 H293 PQN sing 904 n n 
C30 H301 PQN sing 905 n n 
C30 H302 PQN sing 906 n n 
C30 H303 PQN sing 907 n n 
#
_atom_sites.entry_id                     6L7P 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
S 19 BCR A 1 401 103 BCR BCR . 
T 20 LHG A 1 402 101 LHG LHG . 
U 20 LHG A 1 403 104 LHG LHG . 
V 21 DGD A 1 404 101 DGD DGD . 
W 21 DGD A 1 405 102 DGD DGD . 
X 22 AJP A 1 406 123 AJP AJG . 
Y 22 AJP A 1 407 124 AJP AJG . 
Z 22 AJP A 1 408 138 AJP AJG . 
AA 23 PQN B 1 601 101 PQN PQN . 
BA 20 LHG B 1 602 106 LHG LHG . 
CA 20 LHG B 1 603 108 LHG LHG . 
DA 22 AJP B 1 604 103 AJP AJG . 
EA 22 AJP B 1 605 104 AJP AJG . 
FA 22 AJP B 1 606 108 AJP AJG . 
GA 22 AJP B 1 607 111 AJP AJG . 
HA 22 AJP B 1 608 119 AJP AJG . 
IA 22 AJP B 1 609 127 AJP AJG . 
JA 22 AJP B 1 610 128 AJP AJG . 
KA 22 AJP B 1 611 129 AJP AJG . 
LA 22 AJP B 1 612 140 AJP AJG . 
MA 22 AJP B 1 613 141 AJP AJG . 
NA 22 AJP B 1 614 142 AJP AJG . 
OA 22 AJP C 1 201 125 AJP AJG . 
PA 22 AJP C 1 202 126 AJP AJG . 
QA 19 BCR D 1 601 101 BCR BCR . 
RA 19 BCR D 1 602 102 BCR BCR . 
SA 20 LHG D 1 603 102 LHG LHG . 
TA 20 LHG D 1 604 103 LHG LHG . 
UA 24 SQD D 1 605 102 SQD SQD . 
VA 24 SQD D 1 606 103 SQD SQD . 
WA 22 AJP D 1 607 101 AJP AJG . 
XA 22 AJP D 1 608 102 AJP AJG . 
YA 22 AJP D 1 609 107 AJP AJG . 
ZA 22 AJP D 1 610 109 AJP AJG . 
AB 22 AJP D 1 611 110 AJP AJG . 
BB 22 AJP D 1 612 113 AJP AJG . 
CB 22 AJP D 1 613 120 AJP AJG . 
DB 22 AJP D 1 614 121 AJP AJG . 
EB 22 AJP D 1 615 130 AJP AJG . 
FB 22 AJP D 1 616 137 AJP AJG . 
GB 20 LHG F 1 701 105 LHG LHG . 
HB 20 LHG F 1 702 109 LHG LHG . 
IB 24 SQD F 1 703 101 SQD SQD . 
JB 22 AJP F 1 704 105 AJP AJG . 
KB 22 AJP F 1 705 106 AJP AJG . 
LB 22 AJP F 1 706 112 AJP AJG . 
MB 22 AJP F 1 707 115 AJP AJG . 
NB 22 AJP F 1 708 116 AJP AJG . 
OB 22 AJP F 1 709 136 AJP AJG . 
PB 22 AJP F 1 710 139 AJP AJG . 
QB 22 AJP F 1 711 143 AJP AJG . 
RB 22 AJP F 1 712 144 AJP AJG . 
SB 20 LHG G 1 301 107 LHG LHG . 
TB 22 AJP G 1 302 122 AJP AJG . 
UB 22 AJP G 1 303 131 AJP AJG . 
VB 22 AJP G 1 304 132 AJP AJG . 
WB 22 AJP G 1 305 133 AJP AJG . 
XB 22 AJP G 1 306 134 AJP AJG . 
YB 22 AJP G 1 307 135 AJP AJG . 
ZB 25 SF4 I 1 201 201 SF4 SF4 . 
AC 25 SF4 I 1 202 202 SF4 SF4 . 
BC 25 SF4 K 1 301 301 SF4 SF4 . 
CC 24 SQD L 1 101 104 SQD SQD . 
DC 22 AJP Q 1 101 114 AJP AJG . 
EC 22 AJP Q 1 102 117 AJP AJG . 
FC 22 AJP Q 1 103 118 AJP AJG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PQN . . . AA 23 169.05 142.512 134.095 1 36.77 ? C1 PQN 601 B 1 
HETATM 2 O O1 PQN . . . AA 23 167.775 141.999 134.359 1 36.77 ? O1 PQN 601 B 1 
HETATM 3 C C2 PQN . . . AA 23 169.184 143.712 133.411 1 36.77 ? C2 PQN 601 B 1 
HETATM 4 C C2M PQN . . . AA 23 167.93 144.455 132.959 1 36.77 ? C2M PQN 601 B 1 
HETATM 5 C C3 PQN . . . AA 23 170.457 144.228 133.149 1 36.77 ? C3 PQN 601 B 1 
HETATM 6 C C4 PQN . . . AA 23 171.584 143.53 133.571 1 36.77 ? C4 PQN 601 B 1 
HETATM 7 O O4 PQN . . . AA 23 172.866 144.031 133.312 1 36.77 ? O4 PQN 601 B 1 
HETATM 8 C C5 PQN . . . AA 23 171.445 142.301 134.269 1 36.77 ? C5 PQN 601 B 1 
HETATM 9 C C6 PQN . . . AA 23 172.603 141.594 134.7 1 36.77 ? C6 PQN 601 B 1 
HETATM 10 C C7 PQN . . . AA 23 172.464 140.393 135.382 1 36.77 ? C7 PQN 601 B 1 
HETATM 11 C C8 PQN . . . AA 23 171.193 139.88 135.647 1 36.77 ? C8 PQN 601 B 1 
HETATM 12 C C9 PQN . . . AA 23 170.061 140.571 135.226 1 36.77 ? C9 PQN 601 B 1 
HETATM 13 C C10 PQN . . . AA 23 170.203 141.801 134.527 1 36.77 ? C10 PQN 601 B 1 
HETATM 14 C C11 PQN . . . AA 23 170.617 145.546 132.396 1 36.77 ? C11 PQN 601 B 1 
HETATM 15 C C12 PQN . . . AA 23 170.889 146.733 133.321 1 36.77 ? C12 PQN 601 B 1 
HETATM 16 C C13 PQN . . . AA 23 172.283 147.32 133.129 1 36.77 ? C13 PQN 601 B 1 
HETATM 17 C C14 PQN . . . AA 23 172.367 148.018 131.772 1 36.77 ? C14 PQN 601 B 1 
HETATM 18 C C15 PQN . . . AA 23 172.587 148.313 134.257 1 36.77 ? C15 PQN 601 B 1 
HETATM 19 C C16 PQN . . . AA 23 171.736 149.585 134.2 1 36.77 ? C16 PQN 601 B 1 
HETATM 20 C C17 PQN . . . AA 23 172.214 150.631 135.215 1 36.77 ? C17 PQN 601 B 1 
HETATM 21 C C18 PQN . . . AA 23 171.84 152.068 134.845 1 36.77 ? C18 PQN 601 B 1 
HETATM 22 C C19 PQN . . . AA 23 172.348 152.391 133.447 1 36.77 ? C19 PQN 601 B 1 
HETATM 23 C C20 PQN . . . AA 23 172.487 153.019 135.863 1 36.77 ? C20 PQN 601 B 1 
HETATM 24 C C21 PQN . . . AA 23 172.256 154.51 135.549 1 36.77 ? C21 PQN 601 B 1 
HETATM 25 C C22 PQN . . . AA 23 173.359 155.4 136.152 1 36.77 ? C22 PQN 601 B 1 
HETATM 26 C C23 PQN . . . AA 23 172.86 156.804 136.515 1 36.77 ? C23 PQN 601 B 1 
HETATM 27 C C24 PQN . . . AA 23 173.555 157.831 135.631 1 36.77 ? C24 PQN 601 B 1 
HETATM 28 C C25 PQN . . . AA 23 173.167 157.094 137.985 1 36.77 ? C25 PQN 601 B 1 
HETATM 29 C C26 PQN . . . AA 23 172.725 158.497 138.413 1 36.77 ? C26 PQN 601 B 1 
HETATM 30 C C27 PQN . . . AA 23 171.85 158.482 139.669 1 36.77 ? C27 PQN 601 B 1 
HETATM 31 C C28 PQN . . . AA 23 172.672 158.451 140.959 1 36.77 ? C28 PQN 601 B 1 
HETATM 32 C C29 PQN . . . AA 23 172.577 159.791 141.691 1 36.77 ? C29 PQN 601 B 1 
HETATM 33 C C30 PQN . . . AA 23 172.225 157.3 141.86 1 36.77 ? C30 PQN 601 B 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    36 
_model_server_stats.query_time_ms           247 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           33 
#