data_6L7V # _model_server_result.job_id giJItmd-znXOLobqh-aTqg _model_server_result.datetime_utc '2024-11-14 18:35:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6l7v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 6L7V # _exptl.entry_id 6L7V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 257.955 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description TRIPHOSPHATE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6L7V _cell.length_a 67.266 _cell.length_b 67.266 _cell.length_c 76.82 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6L7V _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall 'P 32 2"' _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 31 A GLU 44 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.641 ? metalc ? metalc2 A OE2 GLU 176 A GLU 210 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? metalc ? metalc3 B MN MN . A MN 301 1_555 C O2A 3PO . A 3PO 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc4 B MN MN . A MN 301 1_555 C O1B 3PO . A 3PO 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? # _chem_comp.formula 'H5 O10 P3' _chem_comp.formula_weight 257.955 _chem_comp.id 3PO _chem_comp.mon_nstd_flag . _chem_comp.name TRIPHOSPHATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G 3PO doub 1 n n PG O2G 3PO sing 2 n n PG O3G 3PO sing 3 n n PG O3B 3PO sing 4 n n O2G HOG2 3PO sing 5 n n O3G HOG3 3PO sing 6 n n PB O1B 3PO doub 7 n n PB O2B 3PO sing 8 n n PB O3B 3PO sing 9 n n PB O3A 3PO sing 10 n n O2B HOB2 3PO sing 11 n n PA O1A 3PO doub 12 n n PA O2A 3PO sing 13 n n PA O3A 3PO sing 14 n n PA O5' 3PO sing 15 n n O2A HOA2 3PO sing 16 n n O5' HO5' 3PO sing 17 n n # _atom_sites.entry_id 6L7V _atom_sites.fract_transf_matrix[1][1] 0.014866 _atom_sites.fract_transf_matrix[1][2] 0.008583 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017166 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013017 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 301 301 MN MN . C 3 3PO A 1 302 303 3PO 3PO . D 4 IOD A 1 303 1 IOD IOD . E 4 IOD A 1 304 2 IOD IOD . F 4 IOD A 1 305 3 IOD IOD . G 4 IOD A 1 306 4 IOD IOD . H 4 IOD A 1 307 5 IOD IOD . I 4 IOD A 1 308 6 IOD IOD . J 4 IOD A 1 309 7 IOD IOD . K 5 HOH A 1 401 4 HOH HOH . K 5 HOH A 2 402 17 HOH HOH . K 5 HOH A 3 403 15 HOH HOH . K 5 HOH A 4 404 7 HOH HOH . K 5 HOH A 5 405 10 HOH HOH . K 5 HOH A 6 406 16 HOH HOH . K 5 HOH A 7 407 6 HOH HOH . K 5 HOH A 8 408 12 HOH HOH . K 5 HOH A 9 409 19 HOH HOH . K 5 HOH A 10 410 1 HOH HOH . K 5 HOH A 11 411 3 HOH HOH . K 5 HOH A 12 412 11 HOH HOH . K 5 HOH A 13 413 27 HOH HOH . K 5 HOH A 14 414 20 HOH HOH . K 5 HOH A 15 415 22 HOH HOH . K 5 HOH A 16 416 9 HOH HOH . K 5 HOH A 17 417 21 HOH HOH . K 5 HOH A 18 418 8 HOH HOH . K 5 HOH A 19 419 23 HOH HOH . K 5 HOH A 20 420 33 HOH HOH . K 5 HOH A 21 421 24 HOH HOH . K 5 HOH A 22 422 13 HOH HOH . K 5 HOH A 23 423 32 HOH HOH . K 5 HOH A 24 424 2 HOH HOH . K 5 HOH A 25 425 31 HOH HOH . K 5 HOH A 26 426 34 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG 3PO . . . C 3 -6.599 14.847 5.702 1 99.52 ? PG 3PO 302 A 1 HETATM 2 O O1G 3PO . . . C 3 -7.032 13.87 4.628 1 98.78 ? O1G 3PO 302 A 1 HETATM 3 O O2G 3PO . . . C 3 -6.263 16.171 5.054 1 102.69 ? O2G 3PO 302 A 1 HETATM 4 O O3G 3PO . . . C 3 -5.381 14.319 6.43 1 99.41 ? O3G 3PO 302 A 1 HETATM 5 P PB 3PO . . . C 3 -8.835 16.409 6.647 1 88.3 ? PB 3PO 302 A 1 HETATM 6 O O1B 3PO . . . C 3 -8.013 17.666 6.83 1 91.28 ? O1B 3PO 302 A 1 HETATM 7 O O2B 3PO . . . C 3 -9.932 16.378 7.695 1 85.72 ? O2B 3PO 302 A 1 HETATM 8 O O3B 3PO . . . C 3 -7.826 15.105 6.778 1 94.18 ? O3B 3PO 302 A 1 HETATM 9 P PA 3PO . . . C 3 -10.702 17.476 4.726 1 89.21 ? PA 3PO 302 A 1 HETATM 10 O O1A 3PO . . . C 3 -11.36 17.107 3.417 1 86.89 ? O1A 3PO 302 A 1 HETATM 11 O O2A 3PO . . . C 3 -10.116 18.865 4.624 1 93.75 ? O2A 3PO 302 A 1 HETATM 12 O O3A 3PO . . . C 3 -9.51 16.41 5.139 1 88.9 ? O3A 3PO 302 A 1 HETATM 13 O O5' 3PO . . . C 3 -11.744 17.454 5.818 1 89 ? O5' 3PO 302 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 13 #