data_6L89 # _model_server_result.job_id UPSML6mFN6NiVerDbHemvQ _model_server_result.datetime_utc '2025-01-25 13:24:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6l89 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 6L89 # _exptl.entry_id 6L89 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 424.443 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'methyl (2R)-3-(4-hydroxyphenyl)-2-[[3-(3-methylbut-2-enyl)-4-oxidanyl-phenyl]methyl]-4-oxidanyl-5-oxidanylidene-furan-2-carboxylate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.643 _cell.angle_gamma 90 _cell.entry_id 6L89 _cell.length_a 93.623 _cell.length_b 61.124 _cell.length_c 119.762 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6L89 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_455 x-1/2,y+1/2,z 1 0 0 0 1 0 0 0 1 -46.8115 30.562 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C24 H24 O7' _chem_comp.formula_weight 424.443 _chem_comp.id E7C _chem_comp.mon_nstd_flag . _chem_comp.name 'methyl (2R)-3-(4-hydroxyphenyl)-2-[[3-(3-methylbut-2-enyl)-4-oxidanyl-phenyl]methyl]-4-oxidanyl-5-oxidanylidene-furan-2-carboxylate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Butyrolactone I' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAC CAU E7C sing 83 n n OAH CBA E7C sing 84 n n CAU CAB E7C sing 85 n n CAU CAI E7C doub 86 n n OAD CAV E7C doub 87 n n CBA CAL E7C doub 88 n y CBA CBD E7C sing 89 n y CAQ CAI E7C sing 90 n n CAQ CBD E7C sing 91 n n CAL CAM E7C sing 92 n y CBD CAP E7C doub 93 n y CAV OAT E7C sing 94 n n CAV CAX E7C sing 95 n n OAT CBE E7C sing 96 n n CAM CBB E7C doub 97 n y CAP CBB E7C sing 98 n y OAS CAA E7C sing 99 n n OAS CAW E7C sing 100 n n CBB CAR E7C sing 101 n n CAX OAF E7C sing 102 n n CAX CAY E7C doub 103 n n CBE CAW E7C sing 104 n n CBE CAR E7C sing 105 n n CBE CAY E7C sing 106 n n CAW OAE E7C doub 107 n n CAY CBC E7C sing 108 n n CBC CAO E7C doub 109 n y CBC CAN E7C sing 110 n y CAO CAK E7C sing 111 n y CAN CAJ E7C doub 112 n y CAK CAZ E7C doub 113 n y CAJ CAZ E7C sing 114 n y CAZ OAG E7C sing 115 n n CAB H1 E7C sing 116 n n CAB H2 E7C sing 117 n n CAB H3 E7C sing 118 n n CAC H4 E7C sing 119 n n CAC H5 E7C sing 120 n n CAC H6 E7C sing 121 n n CAI H7 E7C sing 122 n n CAQ H8 E7C sing 123 n n CAQ H9 E7C sing 124 n n CAP H10 E7C sing 125 n n OAH H11 E7C sing 126 n n CAL H12 E7C sing 127 n n CAM H13 E7C sing 128 n n CAR H14 E7C sing 129 n n CAR H15 E7C sing 130 n n CAA H16 E7C sing 131 n n CAA H17 E7C sing 132 n n CAA H18 E7C sing 133 n n OAF H19 E7C sing 134 n n CAN H20 E7C sing 135 n n CAJ H21 E7C sing 136 n n OAG H22 E7C sing 137 n n CAK H23 E7C sing 138 n n CAO H24 E7C sing 139 n n # _atom_sites.entry_id 6L89 _atom_sites.fract_transf_matrix[1][1] 0.010681 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002593 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01636 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008592 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 E7C A 1 501 501 E7C DRG . D 2 E7C B 1 501 501 E7C DRG . E 3 HOH A 1 601 94 HOH HOH . E 3 HOH A 2 602 139 HOH HOH . E 3 HOH A 3 603 51 HOH HOH . E 3 HOH A 4 604 52 HOH HOH . E 3 HOH A 5 605 91 HOH HOH . E 3 HOH A 6 606 71 HOH HOH . E 3 HOH A 7 607 61 HOH HOH . E 3 HOH A 8 608 60 HOH HOH . E 3 HOH A 9 609 56 HOH HOH . E 3 HOH A 10 610 27 HOH HOH . E 3 HOH A 11 611 76 HOH HOH . E 3 HOH A 12 612 15 HOH HOH . E 3 HOH A 13 613 34 HOH HOH . E 3 HOH A 14 614 37 HOH HOH . E 3 HOH A 15 615 45 HOH HOH . E 3 HOH A 16 616 21 HOH HOH . E 3 HOH A 17 617 26 HOH HOH . E 3 HOH A 18 618 53 HOH HOH . E 3 HOH A 19 619 87 HOH HOH . E 3 HOH A 20 620 62 HOH HOH . E 3 HOH A 21 621 49 HOH HOH . E 3 HOH A 22 622 48 HOH HOH . E 3 HOH A 23 623 42 HOH HOH . E 3 HOH A 24 624 23 HOH HOH . E 3 HOH A 25 625 74 HOH HOH . E 3 HOH A 26 626 24 HOH HOH . E 3 HOH A 27 627 32 HOH HOH . E 3 HOH A 28 628 89 HOH HOH . E 3 HOH A 29 629 79 HOH HOH . E 3 HOH A 30 630 59 HOH HOH . E 3 HOH A 31 631 35 HOH HOH . E 3 HOH A 32 632 1 HOH HOH . E 3 HOH A 33 633 106 HOH HOH . E 3 HOH A 34 634 31 HOH HOH . E 3 HOH A 35 635 107 HOH HOH . E 3 HOH A 36 636 46 HOH HOH . E 3 HOH A 37 637 75 HOH HOH . E 3 HOH A 38 638 14 HOH HOH . E 3 HOH A 39 639 44 HOH HOH . E 3 HOH A 40 640 9 HOH HOH . E 3 HOH A 41 641 84 HOH HOH . E 3 HOH A 42 642 2 HOH HOH . E 3 HOH A 43 643 99 HOH HOH . E 3 HOH A 44 644 54 HOH HOH . E 3 HOH A 45 645 50 HOH HOH . E 3 HOH A 46 646 101 HOH HOH . E 3 HOH A 47 647 100 HOH HOH . E 3 HOH A 48 648 125 HOH HOH . E 3 HOH A 49 649 78 HOH HOH . E 3 HOH A 50 650 82 HOH HOH . E 3 HOH A 51 651 18 HOH HOH . E 3 HOH A 52 652 108 HOH HOH . E 3 HOH A 53 653 6 HOH HOH . E 3 HOH A 54 654 5 HOH HOH . E 3 HOH A 55 655 143 HOH HOH . E 3 HOH A 56 656 28 HOH HOH . E 3 HOH A 57 657 90 HOH HOH . E 3 HOH A 58 658 10 HOH HOH . E 3 HOH A 59 659 64 HOH HOH . E 3 HOH A 60 660 148 HOH HOH . E 3 HOH A 61 661 144 HOH HOH . E 3 HOH A 62 662 98 HOH HOH . E 3 HOH A 63 663 12 HOH HOH . E 3 HOH A 64 664 25 HOH HOH . E 3 HOH A 65 665 66 HOH HOH . E 3 HOH A 66 666 55 HOH HOH . E 3 HOH A 67 667 65 HOH HOH . E 3 HOH A 68 668 127 HOH HOH . E 3 HOH A 69 669 104 HOH HOH . E 3 HOH A 70 670 124 HOH HOH . E 3 HOH A 71 671 69 HOH HOH . E 3 HOH A 72 672 72 HOH HOH . E 3 HOH A 73 673 109 HOH HOH . E 3 HOH A 74 674 126 HOH HOH . F 3 HOH B 1 601 113 HOH HOH . F 3 HOH B 2 602 118 HOH HOH . F 3 HOH B 3 603 93 HOH HOH . F 3 HOH B 4 604 116 HOH HOH . F 3 HOH B 5 605 96 HOH HOH . F 3 HOH B 6 606 102 HOH HOH . F 3 HOH B 7 607 121 HOH HOH . F 3 HOH B 8 608 43 HOH HOH . F 3 HOH B 9 609 133 HOH HOH . F 3 HOH B 10 610 13 HOH HOH . F 3 HOH B 11 611 83 HOH HOH . F 3 HOH B 12 612 57 HOH HOH . F 3 HOH B 13 613 120 HOH HOH . F 3 HOH B 14 614 73 HOH HOH . F 3 HOH B 15 615 7 HOH HOH . F 3 HOH B 16 616 141 HOH HOH . F 3 HOH B 17 617 97 HOH HOH . F 3 HOH B 18 618 81 HOH HOH . F 3 HOH B 19 619 17 HOH HOH . F 3 HOH B 20 620 11 HOH HOH . F 3 HOH B 21 621 92 HOH HOH . F 3 HOH B 22 622 20 HOH HOH . F 3 HOH B 23 623 8 HOH HOH . F 3 HOH B 24 624 88 HOH HOH . F 3 HOH B 25 625 146 HOH HOH . F 3 HOH B 26 626 4 HOH HOH . F 3 HOH B 27 627 142 HOH HOH . F 3 HOH B 28 628 117 HOH HOH . F 3 HOH B 29 629 39 HOH HOH . F 3 HOH B 30 630 134 HOH HOH . F 3 HOH B 31 631 40 HOH HOH . F 3 HOH B 32 632 38 HOH HOH . F 3 HOH B 33 633 85 HOH HOH . F 3 HOH B 34 634 19 HOH HOH . F 3 HOH B 35 635 22 HOH HOH . F 3 HOH B 36 636 131 HOH HOH . F 3 HOH B 37 637 47 HOH HOH . F 3 HOH B 38 638 136 HOH HOH . F 3 HOH B 39 639 135 HOH HOH . F 3 HOH B 40 640 119 HOH HOH . F 3 HOH B 41 641 16 HOH HOH . F 3 HOH B 42 642 86 HOH HOH . F 3 HOH B 43 643 140 HOH HOH . F 3 HOH B 44 644 3 HOH HOH . F 3 HOH B 45 645 132 HOH HOH . F 3 HOH B 46 646 36 HOH HOH . F 3 HOH B 47 647 33 HOH HOH . F 3 HOH B 48 648 41 HOH HOH . F 3 HOH B 49 649 63 HOH HOH . F 3 HOH B 50 650 80 HOH HOH . F 3 HOH B 51 651 95 HOH HOH . F 3 HOH B 52 652 114 HOH HOH . F 3 HOH B 53 653 58 HOH HOH . F 3 HOH B 54 654 68 HOH HOH . F 3 HOH B 55 655 147 HOH HOH . F 3 HOH B 56 656 115 HOH HOH . F 3 HOH B 57 657 29 HOH HOH . F 3 HOH B 58 658 103 HOH HOH . F 3 HOH B 59 659 129 HOH HOH . F 3 HOH B 60 660 105 HOH HOH . F 3 HOH B 61 661 122 HOH HOH . F 3 HOH B 62 662 130 HOH HOH . F 3 HOH B 63 663 30 HOH HOH . F 3 HOH B 64 664 67 HOH HOH . F 3 HOH B 65 665 70 HOH HOH . F 3 HOH B 66 666 110 HOH HOH . F 3 HOH B 67 667 128 HOH HOH . F 3 HOH B 68 668 77 HOH HOH . F 3 HOH B 69 669 137 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAB E7C . . . C 2 -29.057 27.305 8.009 1 80.06 ? CAB E7C 501 A 1 HETATM 2 C CAU E7C . . . C 2 -29.156 25.834 7.582 1 79.98 ? CAU E7C 501 A 1 HETATM 3 C CAC E7C . . . C 2 -29.054 25.485 6.087 1 79 ? CAC E7C 501 A 1 HETATM 4 C CAI E7C . . . C 2 -29.372 24.764 8.673 1 79.16 ? CAI E7C 501 A 1 HETATM 5 C CAQ E7C . . . C 2 -29.49 23.263 8.361 1 78.61 ? CAQ E7C 501 A 1 HETATM 6 C CBD E7C . . . C 2 -30.739 22.766 8.766 1 79.26 ? CBD E7C 501 A 1 HETATM 7 C CAP E7C . . . C 2 -30.815 21.698 9.666 1 80.31 ? CAP E7C 501 A 1 HETATM 8 C CBA E7C . . . C 2 -31.931 23.306 8.273 1 80.1 ? CBA E7C 501 A 1 HETATM 9 O OAH E7C . . . C 2 -31.845 24.342 7.395 1 79.52 ? OAH E7C 501 A 1 HETATM 10 C CAL E7C . . . C 2 -33.166 22.805 8.671 1 79.43 ? CAL E7C 501 A 1 HETATM 11 C CAM E7C . . . C 2 -33.228 21.741 9.567 1 79.33 ? CAM E7C 501 A 1 HETATM 12 C CBB E7C . . . C 2 -32.049 21.169 10.055 1 80.65 ? CBB E7C 501 A 1 HETATM 13 C CAR E7C . . . C 2 -32.111 20.116 10.987 1 83.63 ? CAR E7C 501 A 1 HETATM 14 C CBE E7C . . . C 2 -31.729 18.673 10.524 1 85.38 ? CBE E7C 501 A 1 HETATM 15 C CAW E7C . . . C 2 -32.831 17.78 10.701 1 81.98 ? CAW E7C 501 A 1 HETATM 16 O OAE E7C . . . C 2 -32.785 16.832 11.486 1 80.56 ? OAE E7C 501 A 1 HETATM 17 O OAS E7C . . . C 2 -33.927 18.042 9.914 1 78.27 ? OAS E7C 501 A 1 HETATM 18 C CAA E7C . . . C 2 -35.208 17.787 10.525 1 76.32 ? CAA E7C 501 A 1 HETATM 19 O OAT E7C . . . C 2 -31.384 18.689 9.134 1 85.1 ? OAT E7C 501 A 1 HETATM 20 C CAV E7C . . . C 2 -30.078 18.323 9.105 1 85.35 ? CAV E7C 501 A 1 HETATM 21 O OAD E7C . . . C 2 -29.384 18.226 8.097 1 84.05 ? OAD E7C 501 A 1 HETATM 22 C CAX E7C . . . C 2 -29.557 18.066 10.277 1 86.95 ? CAX E7C 501 A 1 HETATM 23 O OAF E7C . . . C 2 -28.258 17.687 10.418 1 91.36 ? OAF E7C 501 A 1 HETATM 24 C CAY E7C . . . C 2 -30.52 18.23 11.196 1 86.76 ? CAY E7C 501 A 1 HETATM 25 C CBC E7C . . . C 2 -30.291 18.048 12.531 1 86.35 ? CBC E7C 501 A 1 HETATM 26 C CAN E7C . . . C 2 -31.185 18.471 13.53 1 86.08 ? CAN E7C 501 A 1 HETATM 27 C CAJ E7C . . . C 2 -30.907 18.267 14.88 1 84.72 ? CAJ E7C 501 A 1 HETATM 28 C CAZ E7C . . . C 2 -29.731 17.636 15.273 1 85.55 ? CAZ E7C 501 A 1 HETATM 29 O OAG E7C . . . C 2 -29.444 17.431 16.583 1 88.65 ? OAG E7C 501 A 1 HETATM 30 C CAK E7C . . . C 2 -28.833 17.209 14.313 1 85.32 ? CAK E7C 501 A 1 HETATM 31 C CAO E7C . . . C 2 -29.114 17.413 12.97 1 86.11 ? CAO E7C 501 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 345 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 31 #