data_6L89 # _model_server_result.job_id JIEc8drHaML80dpI7pjnkQ _model_server_result.datetime_utc '2025-01-25 13:40:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6l89 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":501}' # _entry.id 6L89 # _exptl.entry_id 6L89 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 424.443 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'methyl (2R)-3-(4-hydroxyphenyl)-2-[[3-(3-methylbut-2-enyl)-4-oxidanyl-phenyl]methyl]-4-oxidanyl-5-oxidanylidene-furan-2-carboxylate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.643 _cell.angle_gamma 90 _cell.entry_id 6L89 _cell.length_a 93.623 _cell.length_b 61.124 _cell.length_c 119.762 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6L89 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_455 x-1/2,y+1/2,z 1 0 0 0 1 0 0 0 1 -46.8115 30.562 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C24 H24 O7' _chem_comp.formula_weight 424.443 _chem_comp.id E7C _chem_comp.mon_nstd_flag . _chem_comp.name 'methyl (2R)-3-(4-hydroxyphenyl)-2-[[3-(3-methylbut-2-enyl)-4-oxidanyl-phenyl]methyl]-4-oxidanyl-5-oxidanylidene-furan-2-carboxylate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Butyrolactone I' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAC CAU E7C sing 83 n n OAH CBA E7C sing 84 n n CAU CAB E7C sing 85 n n CAU CAI E7C doub 86 n n OAD CAV E7C doub 87 n n CBA CAL E7C doub 88 n y CBA CBD E7C sing 89 n y CAQ CAI E7C sing 90 n n CAQ CBD E7C sing 91 n n CAL CAM E7C sing 92 n y CBD CAP E7C doub 93 n y CAV OAT E7C sing 94 n n CAV CAX E7C sing 95 n n OAT CBE E7C sing 96 n n CAM CBB E7C doub 97 n y CAP CBB E7C sing 98 n y OAS CAA E7C sing 99 n n OAS CAW E7C sing 100 n n CBB CAR E7C sing 101 n n CAX OAF E7C sing 102 n n CAX CAY E7C doub 103 n n CBE CAW E7C sing 104 n n CBE CAR E7C sing 105 n n CBE CAY E7C sing 106 n n CAW OAE E7C doub 107 n n CAY CBC E7C sing 108 n n CBC CAO E7C doub 109 n y CBC CAN E7C sing 110 n y CAO CAK E7C sing 111 n y CAN CAJ E7C doub 112 n y CAK CAZ E7C doub 113 n y CAJ CAZ E7C sing 114 n y CAZ OAG E7C sing 115 n n CAB H1 E7C sing 116 n n CAB H2 E7C sing 117 n n CAB H3 E7C sing 118 n n CAC H4 E7C sing 119 n n CAC H5 E7C sing 120 n n CAC H6 E7C sing 121 n n CAI H7 E7C sing 122 n n CAQ H8 E7C sing 123 n n CAQ H9 E7C sing 124 n n CAP H10 E7C sing 125 n n OAH H11 E7C sing 126 n n CAL H12 E7C sing 127 n n CAM H13 E7C sing 128 n n CAR H14 E7C sing 129 n n CAR H15 E7C sing 130 n n CAA H16 E7C sing 131 n n CAA H17 E7C sing 132 n n CAA H18 E7C sing 133 n n OAF H19 E7C sing 134 n n CAN H20 E7C sing 135 n n CAJ H21 E7C sing 136 n n OAG H22 E7C sing 137 n n CAK H23 E7C sing 138 n n CAO H24 E7C sing 139 n n # _atom_sites.entry_id 6L89 _atom_sites.fract_transf_matrix[1][1] 0.010681 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002593 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01636 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008592 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 E7C A 1 501 501 E7C DRG . D 2 E7C B 1 501 501 E7C DRG . E 3 HOH A 1 601 94 HOH HOH . E 3 HOH A 2 602 139 HOH HOH . E 3 HOH A 3 603 51 HOH HOH . E 3 HOH A 4 604 52 HOH HOH . E 3 HOH A 5 605 91 HOH HOH . E 3 HOH A 6 606 71 HOH HOH . E 3 HOH A 7 607 61 HOH HOH . E 3 HOH A 8 608 60 HOH HOH . E 3 HOH A 9 609 56 HOH HOH . E 3 HOH A 10 610 27 HOH HOH . E 3 HOH A 11 611 76 HOH HOH . E 3 HOH A 12 612 15 HOH HOH . E 3 HOH A 13 613 34 HOH HOH . E 3 HOH A 14 614 37 HOH HOH . E 3 HOH A 15 615 45 HOH HOH . E 3 HOH A 16 616 21 HOH HOH . E 3 HOH A 17 617 26 HOH HOH . E 3 HOH A 18 618 53 HOH HOH . E 3 HOH A 19 619 87 HOH HOH . E 3 HOH A 20 620 62 HOH HOH . E 3 HOH A 21 621 49 HOH HOH . E 3 HOH A 22 622 48 HOH HOH . E 3 HOH A 23 623 42 HOH HOH . E 3 HOH A 24 624 23 HOH HOH . E 3 HOH A 25 625 74 HOH HOH . E 3 HOH A 26 626 24 HOH HOH . E 3 HOH A 27 627 32 HOH HOH . E 3 HOH A 28 628 89 HOH HOH . E 3 HOH A 29 629 79 HOH HOH . E 3 HOH A 30 630 59 HOH HOH . E 3 HOH A 31 631 35 HOH HOH . E 3 HOH A 32 632 1 HOH HOH . E 3 HOH A 33 633 106 HOH HOH . E 3 HOH A 34 634 31 HOH HOH . E 3 HOH A 35 635 107 HOH HOH . E 3 HOH A 36 636 46 HOH HOH . E 3 HOH A 37 637 75 HOH HOH . E 3 HOH A 38 638 14 HOH HOH . E 3 HOH A 39 639 44 HOH HOH . E 3 HOH A 40 640 9 HOH HOH . E 3 HOH A 41 641 84 HOH HOH . E 3 HOH A 42 642 2 HOH HOH . E 3 HOH A 43 643 99 HOH HOH . E 3 HOH A 44 644 54 HOH HOH . E 3 HOH A 45 645 50 HOH HOH . E 3 HOH A 46 646 101 HOH HOH . E 3 HOH A 47 647 100 HOH HOH . E 3 HOH A 48 648 125 HOH HOH . E 3 HOH A 49 649 78 HOH HOH . E 3 HOH A 50 650 82 HOH HOH . E 3 HOH A 51 651 18 HOH HOH . E 3 HOH A 52 652 108 HOH HOH . E 3 HOH A 53 653 6 HOH HOH . E 3 HOH A 54 654 5 HOH HOH . E 3 HOH A 55 655 143 HOH HOH . E 3 HOH A 56 656 28 HOH HOH . E 3 HOH A 57 657 90 HOH HOH . E 3 HOH A 58 658 10 HOH HOH . E 3 HOH A 59 659 64 HOH HOH . E 3 HOH A 60 660 148 HOH HOH . E 3 HOH A 61 661 144 HOH HOH . E 3 HOH A 62 662 98 HOH HOH . E 3 HOH A 63 663 12 HOH HOH . E 3 HOH A 64 664 25 HOH HOH . E 3 HOH A 65 665 66 HOH HOH . E 3 HOH A 66 666 55 HOH HOH . E 3 HOH A 67 667 65 HOH HOH . E 3 HOH A 68 668 127 HOH HOH . E 3 HOH A 69 669 104 HOH HOH . E 3 HOH A 70 670 124 HOH HOH . E 3 HOH A 71 671 69 HOH HOH . E 3 HOH A 72 672 72 HOH HOH . E 3 HOH A 73 673 109 HOH HOH . E 3 HOH A 74 674 126 HOH HOH . F 3 HOH B 1 601 113 HOH HOH . F 3 HOH B 2 602 118 HOH HOH . F 3 HOH B 3 603 93 HOH HOH . F 3 HOH B 4 604 116 HOH HOH . F 3 HOH B 5 605 96 HOH HOH . F 3 HOH B 6 606 102 HOH HOH . F 3 HOH B 7 607 121 HOH HOH . F 3 HOH B 8 608 43 HOH HOH . F 3 HOH B 9 609 133 HOH HOH . F 3 HOH B 10 610 13 HOH HOH . F 3 HOH B 11 611 83 HOH HOH . F 3 HOH B 12 612 57 HOH HOH . F 3 HOH B 13 613 120 HOH HOH . F 3 HOH B 14 614 73 HOH HOH . F 3 HOH B 15 615 7 HOH HOH . F 3 HOH B 16 616 141 HOH HOH . F 3 HOH B 17 617 97 HOH HOH . F 3 HOH B 18 618 81 HOH HOH . F 3 HOH B 19 619 17 HOH HOH . F 3 HOH B 20 620 11 HOH HOH . F 3 HOH B 21 621 92 HOH HOH . F 3 HOH B 22 622 20 HOH HOH . F 3 HOH B 23 623 8 HOH HOH . F 3 HOH B 24 624 88 HOH HOH . F 3 HOH B 25 625 146 HOH HOH . F 3 HOH B 26 626 4 HOH HOH . F 3 HOH B 27 627 142 HOH HOH . F 3 HOH B 28 628 117 HOH HOH . F 3 HOH B 29 629 39 HOH HOH . F 3 HOH B 30 630 134 HOH HOH . F 3 HOH B 31 631 40 HOH HOH . F 3 HOH B 32 632 38 HOH HOH . F 3 HOH B 33 633 85 HOH HOH . F 3 HOH B 34 634 19 HOH HOH . F 3 HOH B 35 635 22 HOH HOH . F 3 HOH B 36 636 131 HOH HOH . F 3 HOH B 37 637 47 HOH HOH . F 3 HOH B 38 638 136 HOH HOH . F 3 HOH B 39 639 135 HOH HOH . F 3 HOH B 40 640 119 HOH HOH . F 3 HOH B 41 641 16 HOH HOH . F 3 HOH B 42 642 86 HOH HOH . F 3 HOH B 43 643 140 HOH HOH . F 3 HOH B 44 644 3 HOH HOH . F 3 HOH B 45 645 132 HOH HOH . F 3 HOH B 46 646 36 HOH HOH . F 3 HOH B 47 647 33 HOH HOH . F 3 HOH B 48 648 41 HOH HOH . F 3 HOH B 49 649 63 HOH HOH . F 3 HOH B 50 650 80 HOH HOH . F 3 HOH B 51 651 95 HOH HOH . F 3 HOH B 52 652 114 HOH HOH . F 3 HOH B 53 653 58 HOH HOH . F 3 HOH B 54 654 68 HOH HOH . F 3 HOH B 55 655 147 HOH HOH . F 3 HOH B 56 656 115 HOH HOH . F 3 HOH B 57 657 29 HOH HOH . F 3 HOH B 58 658 103 HOH HOH . F 3 HOH B 59 659 129 HOH HOH . F 3 HOH B 60 660 105 HOH HOH . F 3 HOH B 61 661 122 HOH HOH . F 3 HOH B 62 662 130 HOH HOH . F 3 HOH B 63 663 30 HOH HOH . F 3 HOH B 64 664 67 HOH HOH . F 3 HOH B 65 665 70 HOH HOH . F 3 HOH B 66 666 110 HOH HOH . F 3 HOH B 67 667 128 HOH HOH . F 3 HOH B 68 668 77 HOH HOH . F 3 HOH B 69 669 137 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAB E7C . . . D 2 -10.555 -6.289 43.872 1 58.87 ? CAB E7C 501 B 1 HETATM 2 C CAU E7C . . . D 2 -9.287 -7.131 43.745 1 58.88 ? CAU E7C 501 B 1 HETATM 3 C CAC E7C . . . D 2 -7.945 -6.53 44.153 1 60.93 ? CAC E7C 501 B 1 HETATM 4 C CAI E7C . . . D 2 -9.372 -8.565 43.225 1 57.71 ? CAI E7C 501 B 1 HETATM 5 C CAQ E7C . . . D 2 -8.104 -9.426 43.087 1 56.11 ? CAQ E7C 501 B 1 HETATM 6 C CBD E7C . . . D 2 -8.428 -10.659 42.511 1 54.87 ? CBD E7C 501 B 1 HETATM 7 C CAP E7C . . . D 2 -9.044 -10.691 41.258 1 53.69 ? CAP E7C 501 B 1 HETATM 8 C CBA E7C . . . D 2 -8.144 -11.87 43.152 1 54.02 ? CBA E7C 501 B 1 HETATM 9 O OAH E7C . . . D 2 -7.531 -11.806 44.361 1 53.07 ? OAH E7C 501 B 1 HETATM 10 C CAL E7C . . . D 2 -8.468 -13.09 42.56 1 53.52 ? CAL E7C 501 B 1 HETATM 11 C CAM E7C . . . D 2 -9.091 -13.107 41.314 1 54.12 ? CAM E7C 501 B 1 HETATM 12 C CBB E7C . . . D 2 -9.384 -11.906 40.651 1 54.37 ? CBB E7C 501 B 1 HETATM 13 C CAR E7C . . . D 2 -10.022 -11.927 39.381 1 54.02 ? CAR E7C 501 B 1 HETATM 14 C CBE E7C . . . D 2 -11.568 -11.967 39.551 1 53.26 ? CBE E7C 501 B 1 HETATM 15 C CAW E7C . . . D 2 -12.287 -12.163 38.341 1 51.8 ? CAW E7C 501 B 1 HETATM 16 O OAE E7C . . . D 2 -11.727 -12.159 37.241 1 49.49 ? OAE E7C 501 B 1 HETATM 17 O OAS E7C . . . D 2 -13.628 -12.388 38.505 1 51.51 ? OAS E7C 501 B 1 HETATM 18 C CAA E7C . . . D 2 -14.422 -12.401 37.302 1 50.92 ? CAA E7C 501 B 1 HETATM 19 O OAT E7C . . . D 2 -11.857 -13.085 40.415 1 54.36 ? OAT E7C 501 B 1 HETATM 20 C CAV E7C . . . D 2 -12.275 -12.503 41.562 1 53.91 ? CAV E7C 501 B 1 HETATM 21 O OAD E7C . . . D 2 -12.57 -13.134 42.573 1 55.63 ? OAD E7C 501 B 1 HETATM 22 C CAX E7C . . . D 2 -12.35 -11.171 41.513 1 53.29 ? CAX E7C 501 B 1 HETATM 23 O OAF E7C . . . D 2 -12.773 -10.403 42.557 1 48.11 ? OAF E7C 501 B 1 HETATM 24 C CAY E7C . . . D 2 -11.97 -10.794 40.269 1 53.74 ? CAY E7C 501 B 1 HETATM 25 C CBC E7C . . . D 2 -11.857 -9.506 39.828 1 55.45 ? CBC E7C 501 B 1 HETATM 26 C CAN E7C . . . D 2 -11.605 -9.192 38.477 1 57.33 ? CAN E7C 501 B 1 HETATM 27 C CAJ E7C . . . D 2 -11.487 -7.878 38.019 1 56.95 ? CAJ E7C 501 B 1 HETATM 28 C CAZ E7C . . . D 2 -11.618 -6.82 38.908 1 56.38 ? CAZ E7C 501 B 1 HETATM 29 O OAG E7C . . . D 2 -11.507 -5.536 38.471 1 53.77 ? OAG E7C 501 B 1 HETATM 30 C CAK E7C . . . D 2 -11.859 -7.096 40.252 1 55.91 ? CAK E7C 501 B 1 HETATM 31 C CAO E7C . . . D 2 -11.973 -8.411 40.703 1 56.23 ? CAO E7C 501 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #