data_6L8L
#
_model_server_result.job_id            pNP8thdTiaRCyjok9nWfjw 
_model_server_result.datetime_utc      '2024-10-11 01:21:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6l8l 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":600}' 
#
_entry.id    6L8L 
#
_exptl.entry_id    6L8L 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              440.497 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1-{(3R)-3-[4-amino-3-(4-phenoxyphenyl)-1H-pyrazolo[3,4-d]pyrimidin-1-yl]piperidin-1-yl}prop-2-en-1-one 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         89.97 
_cell.angle_beta          89.94 
_cell.angle_gamma         90.03 
_cell.entry_id            6L8L 
_cell.length_a            42.604 
_cell.length_b            63.407 
_cell.length_c            113.922 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6L8L 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,I 1 1 
B,F,J 2 1 
C,G,K 3 1 
D,H,L 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
_chem_comp.formula           'C25 H24 N6 O2' 
_chem_comp.formula_weight    440.497 
_chem_comp.id                1E8 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1-{(3R)-3-[4-amino-3-(4-phenoxyphenyl)-1H-pyrazolo[3,4-d]pyrimidin-1-yl]piperidin-1-yl}prop-2-en-1-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     Imbruvica;PCI-32765 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C2 N1 1E8 doub 1 n y 
N1 C6 1E8 sing 2 n y 
N3 C2 1E8 sing 3 n y 
C2 H2 1E8 sing 4 n n 
N3 C4 1E8 doub 5 n y 
NBF C4 1E8 sing 6 n y 
C4 C5 1E8 sing 7 n y 
C5 C6 1E8 doub 8 n y 
C5 CBB 1E8 sing 9 n y 
C6 NAB 1E8 sing 10 n n 
CAA CAD 1E8 doub 11 n n 
CAA HAA 1E8 sing 12 n n 
CAA HAAA 1E8 sing 13 n n 
NAB HNAB 1E8 sing 14 n n 
NAB HNAA 1E8 sing 15 n n 
OAC CAW 1E8 doub 16 n n 
CAD CAW 1E8 sing 17 n n 
CAD HAD 1E8 sing 18 n n 
CAF CAE 1E8 doub 19 n y 
CAE CAG 1E8 sing 20 n y 
CAE HAE 1E8 sing 21 n n 
CAF CAI 1E8 sing 22 n y 
CAF HAF 1E8 sing 23 n n 
CAG CAJ 1E8 doub 24 n y 
CAG HAG 1E8 sing 25 n n 
CAI CAY 1E8 doub 26 n y 
CAI HAI 1E8 sing 27 n n 
CAY CAJ 1E8 sing 28 n y 
CAJ HAJ 1E8 sing 29 n n 
CAM CAK 1E8 doub 30 n y 
CAK CAZ 1E8 sing 31 n y 
CAK HAK 1E8 sing 32 n n 
CAZ CAL 1E8 doub 33 n y 
CAN CAL 1E8 sing 34 n y 
CAL HAL 1E8 sing 35 n n 
CAM CBA 1E8 sing 36 n y 
CAM HAM 1E8 sing 37 n n 
CBA CAN 1E8 doub 38 n y 
CAN HAN 1E8 sing 39 n n 
CAQ CAO 1E8 sing 40 n n 
CAO CAP 1E8 sing 41 n n 
CAO HAO 1E8 sing 42 n n 
CAO HAOA 1E8 sing 43 n n 
CBE CAP 1E8 sing 44 n n 
CAP HAP 1E8 sing 45 n n 
CAP HAPA 1E8 sing 46 n n 
NBG CAQ 1E8 sing 47 n n 
CAQ HAQ 1E8 sing 48 n n 
CAQ HAQA 1E8 sing 49 n n 
NBG CAR 1E8 sing 50 n n 
CAR CBE 1E8 sing 51 n n 
CAR HAR 1E8 sing 52 n n 
CAR HARA 1E8 sing 53 n n 
NBF NAU 1E8 sing 54 n y 
NAU CBB 1E8 doub 55 n y 
CAZ OAV 1E8 sing 56 n n 
CAY OAV 1E8 sing 57 n n 
CAW NBG 1E8 sing 58 n n 
CBB CBA 1E8 sing 59 n n 
CBE NBF 1E8 sing 60 n n 
CBE HBE 1E8 sing 61 n n 
#
_atom_sites.entry_id                     6L8L 
_atom_sites.fract_transf_matrix[1][1]    0.023472 
_atom_sites.fract_transf_matrix[1][2]    0.000013 
_atom_sites.fract_transf_matrix[1][3]    -0.000023 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015771 
_atom_sites.fract_transf_matrix[2][3]    -0.000007 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008778 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 1E8 A 1 600 600 1E8 1E8 . 
F 2 1E8 B 1 600 600 1E8 1E8 . 
G 2 1E8 C 1 600 600 1E8 1E8 . 
H 2 1E8 D 1 600 600 1E8 1E8 . 
I 3 HOH A 1 701 2 HOH HOH . 
J 3 HOH B 1 701 3 HOH HOH . 
K 3 HOH C 1 701 10 HOH HOH . 
K 3 HOH C 2 702 5 HOH HOH . 
K 3 HOH C 3 703 9 HOH HOH . 
L 3 HOH D 1 701 4 HOH HOH . 
L 3 HOH D 2 702 7 HOH HOH . 
L 3 HOH D 3 703 1 HOH HOH . 
L 3 HOH D 4 704 8 HOH HOH . 
L 3 HOH D 5 705 6 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 1E8 . . . E 2 7.797 7.627 8.218 1 39.59 ? N1 1E8 600 A 1 
HETATM 2 C C2 1E8 . . . E 2 8.156 8.619 7.356 1 43.38 ? C2 1E8 600 A 1 
HETATM 3 N N3 1E8 . . . E 2 7.265 9.59 7.028 1 46.88 ? N3 1E8 600 A 1 
HETATM 4 C C4 1E8 . . . E 2 6.005 9.572 7.564 1 51.42 ? C4 1E8 600 A 1 
HETATM 5 C C5 1E8 . . . E 2 5.647 8.585 8.422 1 50.72 ? C5 1E8 600 A 1 
HETATM 6 C C6 1E8 . . . E 2 6.548 7.607 8.751 1 42.29 ? C6 1E8 600 A 1 
HETATM 7 C CAA 1E8 . . . E 2 6.654 14.512 2.856 1 78.31 ? CAA 1E8 600 A 1 
HETATM 8 N NAB 1E8 . . . E 2 6.828 6.421 9.487 1 41.03 ? NAB 1E8 600 A 1 
HETATM 9 O OAC 1E8 . . . E 2 7.353 11.188 3.174 1 87.51 ? OAC 1E8 600 A 1 
HETATM 10 C CAD 1E8 . . . E 2 6.5 13.165 2.139 1 78.73 ? CAD 1E8 600 A 1 
HETATM 11 C CAE 1E8 . . . E 2 -1.347 3.189 10.035 1 41.4 ? CAE 1E8 600 A 1 
HETATM 12 C CAF 1E8 . . . E 2 -0.089 2.903 10.487 1 41.4 ? CAF 1E8 600 A 1 
HETATM 13 C CAG 1E8 . . . E 2 -1.921 4.42 10.315 1 46.4 ? CAG 1E8 600 A 1 
HETATM 14 C CAI 1E8 . . . E 2 0.61 3.836 11.22 1 45.94 ? CAI 1E8 600 A 1 
HETATM 15 C CAJ 1E8 . . . E 2 -1.227 5.347 11.043 1 48.84 ? CAJ 1E8 600 A 1 
HETATM 16 C CAK 1E8 . . . E 2 2.976 6.883 11.796 1 44.59 ? CAK 1E8 600 A 1 
HETATM 17 C CAL 1E8 . . . E 2 1.155 7.165 10.222 1 35.95 ? CAL 1E8 600 A 1 
HETATM 18 C CAM 1E8 . . . E 2 3.827 7.563 10.956 1 47.08 ? CAM 1E8 600 A 1 
HETATM 19 C CAN 1E8 . . . E 2 2.007 7.846 9.382 1 41.33 ? CAN 1E8 600 A 1 
HETATM 20 C CAO 1E8 . . . E 2 4.191 13.566 5.528 1 65.87 ? CAO 1E8 600 A 1 
HETATM 21 C CAP 1E8 . . . E 2 4.064 12.474 6.615 1 64.77 ? CAP 1E8 600 A 1 
HETATM 22 C CAQ 1E8 . . . E 2 4.36 12.959 4.148 1 70.71 ? CAQ 1E8 600 A 1 
HETATM 23 C CAR 1E8 . . . E 2 5.361 10.917 5.114 1 70.34 ? CAR 1E8 600 A 1 
HETATM 24 N NAU 1E8 . . . E 2 3.895 9.917 8.192 1 53.36 ? NAU 1E8 600 A 1 
HETATM 25 O OAV 1E8 . . . E 2 0.767 6.007 12.25 1 46.08 ? OAV 1E8 600 A 1 
HETATM 26 C CAW 1E8 . . . E 2 6.473 12.035 3.17 1 81.45 ? CAW 1E8 600 A 1 
HETATM 27 C CAY 1E8 . . . E 2 0.047 5.054 11.499 1 48.41 ? CAY 1E8 600 A 1 
HETATM 28 C CAZ 1E8 . . . E 2 1.615 6.681 11.42 1 40.42 ? CAZ 1E8 600 A 1 
HETATM 29 C CBA 1E8 . . . E 2 3.364 8.048 9.755 1 45.65 ? CBA 1E8 600 A 1 
HETATM 30 C CBB 1E8 . . . E 2 4.32 8.812 8.809 1 49.69 ? CBB 1E8 600 A 1 
HETATM 31 C CBE 1E8 . . . E 2 5.202 11.471 6.532 1 64.37 ? CBE 1E8 600 A 1 
HETATM 32 N NBF 1E8 . . . E 2 4.935 10.402 7.411 1 54.68 ? NBF 1E8 600 A 1 
HETATM 33 N NBG 1E8 . . . E 2 5.409 11.971 4.134 1 75.91 ? NBG 1E8 600 A 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           270 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           33 
#