data_6L8U # _model_server_result.job_id mhwRL1bP7FXUmTmvNuSILw _model_server_result.datetime_utc '2025-07-31 03:44:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6l8u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1001}' # _entry.id 6L8U # _exptl.entry_id 6L8U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.44 _cell.angle_gamma 90 _cell.entry_id 6L8U _cell.length_a 48.14 _cell.length_b 140.34 _cell.length_c 86.42 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6L8U _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,I 1 1 B,F,J 2 1 C,G,K 3 1 D,H,L 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 277 n n N HN1 SAH sing 278 n n N HN2 SAH sing 279 n n CA CB SAH sing 280 n n CA C SAH sing 281 n n CA HA SAH sing 282 n n CB CG SAH sing 283 n n CB HB1 SAH sing 284 n n CB HB2 SAH sing 285 n n CG SD SAH sing 286 n n CG HG1 SAH sing 287 n n CG HG2 SAH sing 288 n n SD C5' SAH sing 289 n n C O SAH doub 290 n n C OXT SAH sing 291 n n OXT HXT SAH sing 292 n n C5' C4' SAH sing 293 n n C5' "H5'1" SAH sing 294 n n C5' "H5'2" SAH sing 295 n n C4' O4' SAH sing 296 n n C4' C3' SAH sing 297 n n C4' H4' SAH sing 298 n n O4' C1' SAH sing 299 n n C3' O3' SAH sing 300 n n C3' C2' SAH sing 301 n n C3' H3' SAH sing 302 n n O3' HO3' SAH sing 303 n n C2' O2' SAH sing 304 n n C2' C1' SAH sing 305 n n C2' H2' SAH sing 306 n n O2' HO2' SAH sing 307 n n C1' N9 SAH sing 308 n n C1' H1' SAH sing 309 n n N9 C8 SAH sing 310 n y N9 C4 SAH sing 311 n y C8 N7 SAH doub 312 n y C8 H8 SAH sing 313 n n N7 C5 SAH sing 314 n y C5 C6 SAH sing 315 n y C5 C4 SAH doub 316 n y C6 N6 SAH sing 317 n n C6 N1 SAH doub 318 n y N6 HN61 SAH sing 319 n n N6 HN62 SAH sing 320 n n N1 C2 SAH sing 321 n y C2 N3 SAH doub 322 n y C2 H2 SAH sing 323 n n N3 C4 SAH sing 324 n y # _atom_sites.entry_id 6L8U _atom_sites.fract_transf_matrix[1][1] 0.020773 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005739 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007126 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012005 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 SAH A 1 1001 1001 SAH SAH . F 2 SAH B 1 1001 1001 SAH SAH . G 2 SAH C 1 1001 1001 SAH SAH . H 2 SAH D 1 1001 1001 SAH SAH . I 3 HOH A 1 2001 2001 HOH HOH . I 3 HOH A 2 2002 2002 HOH HOH . J 3 HOH B 1 2001 2001 HOH HOH . K 3 HOH C 1 2001 2001 HOH HOH . K 3 HOH C 2 2002 2002 HOH HOH . L 3 HOH D 1 2001 2001 HOH HOH . L 3 HOH D 2 2002 2002 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . G 2 -42.757 -42.243 41.967 1 33.63 ? N SAH 1001 C 1 HETATM 2 C CA SAH . . . G 2 -44.042 -42.89 41.812 1 36.05 ? CA SAH 1001 C 1 HETATM 3 C CB SAH . . . G 2 -44.2 -43.993 42.848 1 32.91 ? CB SAH 1001 C 1 HETATM 4 C CG SAH . . . G 2 -43.587 -43.602 44.183 1 33.92 ? CG SAH 1001 C 1 HETATM 5 S SD SAH . . . G 2 -43.78 -44.922 45.325 1 40.2 ? SD SAH 1001 C 1 HETATM 6 C C SAH . . . G 2 -45.126 -41.88 42.004 1 47.05 ? C SAH 1001 C 1 HETATM 7 O O SAH . . . G 2 -44.828 -40.776 42.503 1 41.67 ? O SAH 1001 C 1 HETATM 8 O OXT SAH . . . G 2 -46.285 -42.183 41.657 1 55.19 ? OXT SAH 1001 C 1 HETATM 9 C C5' SAH . . . G 2 -42.111 -45.444 45.507 1 23.51 ? C5' SAH 1001 C 1 HETATM 10 C C4' SAH . . . G 2 -41.736 -46.402 44.387 1 25.83 ? C4' SAH 1001 C 1 HETATM 11 O O4' SAH . . . G 2 -40.324 -46.585 44.381 1 32.08 ? O4' SAH 1001 C 1 HETATM 12 C C3' SAH . . . G 2 -42.35 -47.778 44.569 1 26.41 ? C3' SAH 1001 C 1 HETATM 13 O O3' SAH . . . G 2 -43.287 -48.03 43.522 1 23.9 ? O3' SAH 1001 C 1 HETATM 14 C C2' SAH . . . G 2 -41.207 -48.766 44.485 1 15.6 ? C2' SAH 1001 C 1 HETATM 15 O O2' SAH . . . G 2 -41.485 -49.731 43.472 1 28.59 ? O2' SAH 1001 C 1 HETATM 16 C C1' SAH . . . G 2 -40.002 -47.941 44.082 1 29.03 ? C1' SAH 1001 C 1 HETATM 17 N N9 SAH . . . G 2 -38.774 -48.344 44.807 1 28.26 ? N9 SAH 1001 C 1 HETATM 18 C C8 SAH . . . G 2 -38.597 -48.339 46.138 1 26.72 ? C8 SAH 1001 C 1 HETATM 19 N N7 SAH . . . G 2 -37.352 -48.758 46.465 1 27.28 ? N7 SAH 1001 C 1 HETATM 20 C C5 SAH . . . G 2 -36.708 -49.037 45.322 1 19.67 ? C5 SAH 1001 C 1 HETATM 21 C C6 SAH . . . G 2 -35.365 -49.525 44.948 1 26.24 ? C6 SAH 1001 C 1 HETATM 22 N N6 SAH . . . G 2 -34.436 -49.805 45.887 1 17.88 ? N6 SAH 1001 C 1 HETATM 23 N N1 SAH . . . G 2 -35.098 -49.681 43.637 1 31.92 ? N1 SAH 1001 C 1 HETATM 24 C C2 SAH . . . G 2 -36.011 -49.408 42.69 1 27.38 ? C2 SAH 1001 C 1 HETATM 25 N N3 SAH . . . G 2 -37.247 -48.961 42.959 1 23.98 ? N3 SAH 1001 C 1 HETATM 26 C C4 SAH . . . G 2 -37.648 -48.76 44.232 1 24.32 ? C4 SAH 1001 C 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 26 #