data_6L8U # _model_server_result.job_id 5NopU3uZP0gfiMmOVDvi4g _model_server_result.datetime_utc '2025-07-31 22:12:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6l8u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1001}' # _entry.id 6L8U # _exptl.entry_id 6L8U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.44 _cell.angle_gamma 90 _cell.entry_id 6L8U _cell.length_a 48.14 _cell.length_b 140.34 _cell.length_c 86.42 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6L8U _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,I 1 1 B,F,J 2 1 C,G,K 3 1 D,H,L 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 277 n n N HN1 SAH sing 278 n n N HN2 SAH sing 279 n n CA CB SAH sing 280 n n CA C SAH sing 281 n n CA HA SAH sing 282 n n CB CG SAH sing 283 n n CB HB1 SAH sing 284 n n CB HB2 SAH sing 285 n n CG SD SAH sing 286 n n CG HG1 SAH sing 287 n n CG HG2 SAH sing 288 n n SD C5' SAH sing 289 n n C O SAH doub 290 n n C OXT SAH sing 291 n n OXT HXT SAH sing 292 n n C5' C4' SAH sing 293 n n C5' "H5'1" SAH sing 294 n n C5' "H5'2" SAH sing 295 n n C4' O4' SAH sing 296 n n C4' C3' SAH sing 297 n n C4' H4' SAH sing 298 n n O4' C1' SAH sing 299 n n C3' O3' SAH sing 300 n n C3' C2' SAH sing 301 n n C3' H3' SAH sing 302 n n O3' HO3' SAH sing 303 n n C2' O2' SAH sing 304 n n C2' C1' SAH sing 305 n n C2' H2' SAH sing 306 n n O2' HO2' SAH sing 307 n n C1' N9 SAH sing 308 n n C1' H1' SAH sing 309 n n N9 C8 SAH sing 310 n y N9 C4 SAH sing 311 n y C8 N7 SAH doub 312 n y C8 H8 SAH sing 313 n n N7 C5 SAH sing 314 n y C5 C6 SAH sing 315 n y C5 C4 SAH doub 316 n y C6 N6 SAH sing 317 n n C6 N1 SAH doub 318 n y N6 HN61 SAH sing 319 n n N6 HN62 SAH sing 320 n n N1 C2 SAH sing 321 n y C2 N3 SAH doub 322 n y C2 H2 SAH sing 323 n n N3 C4 SAH sing 324 n y # _atom_sites.entry_id 6L8U _atom_sites.fract_transf_matrix[1][1] 0.020773 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005739 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007126 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012005 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 SAH A 1 1001 1001 SAH SAH . F 2 SAH B 1 1001 1001 SAH SAH . G 2 SAH C 1 1001 1001 SAH SAH . H 2 SAH D 1 1001 1001 SAH SAH . I 3 HOH A 1 2001 2001 HOH HOH . I 3 HOH A 2 2002 2002 HOH HOH . J 3 HOH B 1 2001 2001 HOH HOH . K 3 HOH C 1 2001 2001 HOH HOH . K 3 HOH C 2 2002 2002 HOH HOH . L 3 HOH D 1 2001 2001 HOH HOH . L 3 HOH D 2 2002 2002 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . H 2 -33.088 -4.104 37.093 1 48.7 ? N SAH 1001 D 1 HETATM 2 C CA SAH . . . H 2 -32.442 -3.673 35.871 1 40.17 ? CA SAH 1001 D 1 HETATM 3 C CB SAH . . . H 2 -31.348 -2.667 36.198 1 38.51 ? CB SAH 1001 D 1 HETATM 4 C CG SAH . . . H 2 -30.589 -3.069 37.453 1 35.23 ? CG SAH 1001 D 1 HETATM 5 S SD SAH . . . H 2 -29.331 -1.886 37.768 1 37.62 ? SD SAH 1001 D 1 HETATM 6 C C SAH . . . H 2 -31.839 -4.853 35.174 1 42.56 ? C SAH 1001 D 1 HETATM 7 O O SAH . . . H 2 -31.519 -5.848 35.853 1 42.02 ? O SAH 1001 D 1 HETATM 8 O OXT SAH . . . H 2 -31.678 -4.794 33.94 1 42.77 ? OXT SAH 1001 D 1 HETATM 9 C C5' SAH . . . H 2 -29.908 -1.187 39.274 1 31.96 ? C5' SAH 1001 D 1 HETATM 10 C C4' SAH . . . H 2 -30.975 -0.143 38.99 1 22.56 ? C4' SAH 1001 D 1 HETATM 11 O O4' SAH . . . H 2 -31.624 0.206 40.209 1 25.58 ? O4' SAH 1001 D 1 HETATM 12 C C3' SAH . . . H 2 -30.38 1.137 38.431 1 31.14 ? C3' SAH 1001 D 1 HETATM 13 O O3' SAH . . . H 2 -30.921 1.404 37.138 1 26.49 ? O3' SAH 1001 D 1 HETATM 14 C C2' SAH . . . H 2 -30.796 2.238 39.377 1 27.07 ? C2' SAH 1001 D 1 HETATM 15 O O2' SAH . . . H 2 -31.332 3.331 38.636 1 20 ? O2' SAH 1001 D 1 HETATM 16 C C1' SAH . . . H 2 -31.868 1.609 40.242 1 25.72 ? C1' SAH 1001 D 1 HETATM 17 N N9 SAH . . . H 2 -31.816 2.123 41.629 1 22.43 ? N9 SAH 1001 D 1 HETATM 18 C C8 SAH . . . H 2 -30.741 2.158 42.429 1 23.47 ? C8 SAH 1001 D 1 HETATM 19 N N7 SAH . . . H 2 -31.044 2.693 43.637 1 18.89 ? N7 SAH 1001 D 1 HETATM 20 C C5 SAH . . . H 2 -32.346 3.009 43.617 1 16.56 ? C5 SAH 1001 D 1 HETATM 21 C C6 SAH . . . H 2 -33.31 3.609 44.561 1 21.15 ? C6 SAH 1001 D 1 HETATM 22 N N6 SAH . . . H 2 -32.934 3.987 45.802 1 27.49 ? N6 SAH 1001 D 1 HETATM 23 N N1 SAH . . . H 2 -34.578 3.766 44.141 1 25.97 ? N1 SAH 1001 D 1 HETATM 24 C C2 SAH . . . H 2 -34.97 3.396 42.911 1 19.76 ? C2 SAH 1001 D 1 HETATM 25 N N3 SAH . . . H 2 -34.15 2.848 42.007 1 15.12 ? N3 SAH 1001 D 1 HETATM 26 C C4 SAH . . . H 2 -32.849 2.633 42.293 1 18.54 ? C4 SAH 1001 D 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 26 #