data_6L91 # _model_server_result.job_id yfrRIIiZeqMUJ5zdeh8SQQ _model_server_result.datetime_utc '2025-08-31 17:49:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6l91 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":101}' # _entry.id 6L91 # _exptl.entry_id 6L91 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6L91 _cell.length_a 45.69 _cell.length_b 45.69 _cell.length_c 47.611 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6L91 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLY 9 A GLY 9 1_555 A N DVA 10 A DVA 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C DVA 10 A DVA 10 1_555 A N THR 11 A THR 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 108 n n C1 C2 GOL sing 109 n n C1 H11 GOL sing 110 n n C1 H12 GOL sing 111 n n O1 HO1 GOL sing 112 n n C2 O2 GOL sing 113 n n C2 C3 GOL sing 114 n n C2 H2 GOL sing 115 n n O2 HO2 GOL sing 116 n n C3 O3 GOL sing 117 n n C3 H31 GOL sing 118 n n C3 H32 GOL sing 119 n n O3 HO3 GOL sing 120 n n # _atom_sites.entry_id 6L91 _atom_sites.fract_transf_matrix[1][1] 0.021887 _atom_sites.fract_transf_matrix[1][2] 0.012636 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025273 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021004 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 101 1 GOL GOL . C 3 HOH A 1 201 30 HOH HOH . C 3 HOH A 2 202 62 HOH HOH . C 3 HOH A 3 203 32 HOH HOH . C 3 HOH A 4 204 19 HOH HOH . C 3 HOH A 5 205 43 HOH HOH . C 3 HOH A 6 206 6 HOH HOH . C 3 HOH A 7 207 45 HOH HOH . C 3 HOH A 8 208 29 HOH HOH . C 3 HOH A 9 209 5 HOH HOH . C 3 HOH A 10 210 13 HOH HOH . C 3 HOH A 11 211 10 HOH HOH . C 3 HOH A 12 212 60 HOH HOH . C 3 HOH A 13 213 3 HOH HOH . C 3 HOH A 14 214 4 HOH HOH . C 3 HOH A 15 215 36 HOH HOH . C 3 HOH A 16 216 15 HOH HOH . C 3 HOH A 17 217 46 HOH HOH . C 3 HOH A 18 218 37 HOH HOH . C 3 HOH A 19 219 22 HOH HOH . C 3 HOH A 20 220 26 HOH HOH . C 3 HOH A 21 221 23 HOH HOH . C 3 HOH A 22 222 11 HOH HOH . C 3 HOH A 23 223 34 HOH HOH . C 3 HOH A 24 224 57 HOH HOH . C 3 HOH A 25 225 31 HOH HOH . C 3 HOH A 26 226 2 HOH HOH . C 3 HOH A 27 227 61 HOH HOH . C 3 HOH A 28 228 49 HOH HOH . C 3 HOH A 29 229 1 HOH HOH . C 3 HOH A 30 230 24 HOH HOH . C 3 HOH A 31 231 20 HOH HOH . C 3 HOH A 32 232 7 HOH HOH . C 3 HOH A 33 233 39 HOH HOH . C 3 HOH A 34 234 9 HOH HOH . C 3 HOH A 35 235 16 HOH HOH . C 3 HOH A 36 236 8 HOH HOH . C 3 HOH A 37 237 25 HOH HOH . C 3 HOH A 38 238 28 HOH HOH . C 3 HOH A 39 239 14 HOH HOH . C 3 HOH A 40 240 18 HOH HOH . C 3 HOH A 41 241 35 HOH HOH . C 3 HOH A 42 242 52 HOH HOH . C 3 HOH A 43 243 21 HOH HOH . C 3 HOH A 44 244 38 HOH HOH . C 3 HOH A 45 245 27 HOH HOH . C 3 HOH A 46 246 53 HOH HOH . C 3 HOH A 47 247 47 HOH HOH . C 3 HOH A 48 248 42 HOH HOH . C 3 HOH A 49 249 50 HOH HOH . C 3 HOH A 50 250 12 HOH HOH . C 3 HOH A 51 251 17 HOH HOH . C 3 HOH A 52 252 59 HOH HOH . C 3 HOH A 53 253 33 HOH HOH . C 3 HOH A 54 254 44 HOH HOH . C 3 HOH A 55 255 48 HOH HOH . C 3 HOH A 56 256 55 HOH HOH . C 3 HOH A 57 257 56 HOH HOH . C 3 HOH A 58 258 58 HOH HOH . C 3 HOH A 59 259 41 HOH HOH . C 3 HOH A 60 260 51 HOH HOH . C 3 HOH A 61 261 40 HOH HOH . C 3 HOH A 62 262 54 HOH HOH . C 3 HOH A 63 263 63 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 6.818 -21.428 -2.73 1 6.12 ? C1 GOL 101 A 1 HETATM 2 O O1 GOL . . . B 2 6.898 -21.044 -4.084 1 8.07 ? O1 GOL 101 A 1 HETATM 3 C C2 GOL . . . B 2 8.201 -21.795 -2.215 1 6.58 ? C2 GOL 101 A 1 HETATM 4 O O2 GOL . . . B 2 9.11 -20.776 -2.585 1 11.81 ? O2 GOL 101 A 1 HETATM 5 C C3 GOL . . . B 2 8.155 -21.968 -0.701 1 11.74 ? C3 GOL 101 A 1 HETATM 6 O O3 GOL . . . B 2 9.45 -22.272 -0.219 1 11.69 ? O3 GOL 101 A 1 HETATM 7 H H11 GOL . . . B 2 6.411 -20.607 -2.138 1 7.35 ? H11 GOL 101 A 1 HETATM 8 H H12 GOL . . . B 2 6.149 -22.283 -2.629 1 7.35 ? H12 GOL 101 A 1 HETATM 9 H HO1 GOL . . . B 2 5.996 -20.872 -4.428 1 9.68 ? HO1 GOL 101 A 1 HETATM 10 H H2 GOL . . . B 2 8.502 -22.741 -2.666 1 7.89 ? H2 GOL 101 A 1 HETATM 11 H HO2 GOL . . . B 2 8.837 -19.93 -2.171 1 14.17 ? HO2 GOL 101 A 1 HETATM 12 H H31 GOL . . . B 2 7.795 -21.05 -0.236 1 14.09 ? H31 GOL 101 A 1 HETATM 13 H H32 GOL . . . B 2 7.467 -22.773 -0.442 1 14.09 ? H32 GOL 101 A 1 HETATM 14 H HO3 GOL . . . B 2 9.441 -23.155 0.205 1 14.02 ? HO3 GOL 101 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 383 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 14 #