data_6LBW # _model_server_result.job_id imcfALUJ3iLu0m1Dj3nGEQ _model_server_result.datetime_utc '2024-10-20 03:40:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6lbw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":102}' # _entry.id 6LBW # _exptl.entry_id 6LBW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 107.868 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SILVER ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6LBW _cell.length_a 28.56 _cell.length_b 68.11 _cell.length_c 118.85 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6LBW _symmetry.cell_setting ? _symmetry.Int_Tables_number 22 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'F 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A O3' DG 2 A DG 2 1_555 A P CBR 3 A CBR 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.596 ? covale ? covale2 A O3' CBR 3 A CBR 3 1_555 A P DG 4 A DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.611 ? covale ? covale3 A O3' DA 5 A DA 5 1_555 A P LCC 6 A LCC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.607 ? covale ? covale4 A O3' LCC 6 A LCC 6 1_555 A P DT 7 A DT 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.601 ? covale ? covale5 B O3' DG 2 B DG 2 1_555 B P CBR 3 B CBR 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.599 ? covale ? covale6 B O3' CBR 3 B CBR 3 1_555 B P DG 4 B DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.599 ? covale ? covale7 B O3' DA 5 B DA 5 1_555 B P LCC 6 B LCC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.607 ? covale ? covale8 B O3' LCC 6 B LCC 6 1_555 B P DT 7 B DT 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.602 ? metalc ? metalc1 A N7 DG 4 A DG 4 1_555 D AG AG . A AG 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc2 A N1 DA 5 A DA 5 1_555 C AG AG . A AG 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc3 C AG AG . A AG 101 1_555 B N1 DA 5 B DA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc4 D AG AG . A AG 102 1_555 B N7 DG 4 B DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? hydrog WATSON-CRICK hydrog1 A N3 DC 1 A DC 1 1_555 B N1 DG 11 B DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N4 DC 1 A DC 1 1_555 B O6 DG 11 B DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O2 DC 1 A DC 1 1_555 B N2 DG 11 B DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N1 DG 2 A DG 2 1_555 B N3 DC 10 B DC 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N2 DG 2 A DG 2 1_555 B O2 DC 10 B DC 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O6 DG 2 A DG 2 1_555 B N4 DC 10 B DC 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N3 CBR 3 A CBR 3 1_555 B N1 DG 9 B DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N4 CBR 3 A CBR 3 1_555 B O6 DG 9 B DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A O2 CBR 3 A CBR 3 1_555 B N2 DG 9 B DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N1 DG 4 A DG 4 1_555 B N3 DC 8 B DC 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N2 DG 4 A DG 4 1_555 B O2 DC 8 B DC 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A O6 DG 4 A DG 4 1_555 B N4 DC 8 B DC 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N3 DC 8 A DC 8 1_555 B N1 DG 4 B DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N4 DC 8 A DC 8 1_555 B O6 DG 4 B DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A O2 DC 8 A DC 8 1_555 B N2 DG 4 B DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N1 DG 9 A DG 9 1_555 B N3 CBR 3 B CBR 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N2 DG 9 A DG 9 1_555 B O2 CBR 3 B CBR 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A O6 DG 9 A DG 9 1_555 B N4 CBR 3 B CBR 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A N3 DC 10 A DC 10 1_555 B N1 DG 2 B DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A N4 DC 10 A DC 10 1_555 B O6 DG 2 B DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A O2 DC 10 A DC 10 1_555 B N2 DG 2 B DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A N1 DG 11 A DG 11 1_555 B N3 DC 1 B DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A N2 DG 11 A DG 11 1_555 B O2 DC 1 B DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A O6 DG 11 A DG 11 1_555 B N4 DC 1 B DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Ag 1' _chem_comp.formula_weight 107.868 _chem_comp.id AG _chem_comp.mon_nstd_flag . _chem_comp.name 'SILVER ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6LBW _atom_sites.fract_transf_matrix[1][1] 0.035014 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014682 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008414 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 AG A 1 101 1 AG AG . D 2 AG A 1 102 2 AG AG . E 3 HOH A 1 201 55 HOH HOH . E 3 HOH A 2 202 35 HOH HOH . E 3 HOH A 3 203 49 HOH HOH . E 3 HOH A 4 204 10 HOH HOH . E 3 HOH A 5 205 30 HOH HOH . E 3 HOH A 6 206 11 HOH HOH . E 3 HOH A 7 207 40 HOH HOH . E 3 HOH A 8 208 37 HOH HOH . E 3 HOH A 9 209 21 HOH HOH . E 3 HOH A 10 210 9 HOH HOH . E 3 HOH A 11 211 44 HOH HOH . E 3 HOH A 12 212 42 HOH HOH . E 3 HOH A 13 213 34 HOH HOH . E 3 HOH A 14 214 2 HOH HOH . E 3 HOH A 15 215 33 HOH HOH . E 3 HOH A 16 216 12 HOH HOH . E 3 HOH A 17 217 28 HOH HOH . E 3 HOH A 18 218 26 HOH HOH . E 3 HOH A 19 219 3 HOH HOH . E 3 HOH A 20 220 1 HOH HOH . E 3 HOH A 21 221 54 HOH HOH . E 3 HOH A 22 222 29 HOH HOH . E 3 HOH A 23 223 46 HOH HOH . F 3 HOH B 1 101 43 HOH HOH . F 3 HOH B 2 102 45 HOH HOH . F 3 HOH B 3 103 51 HOH HOH . F 3 HOH B 4 104 38 HOH HOH . F 3 HOH B 5 105 27 HOH HOH . F 3 HOH B 6 106 41 HOH HOH . F 3 HOH B 7 107 31 HOH HOH . F 3 HOH B 8 108 17 HOH HOH . F 3 HOH B 9 109 39 HOH HOH . F 3 HOH B 10 110 36 HOH HOH . F 3 HOH B 11 111 24 HOH HOH . F 3 HOH B 12 112 23 HOH HOH . F 3 HOH B 13 113 13 HOH HOH . F 3 HOH B 14 114 14 HOH HOH . F 3 HOH B 15 115 16 HOH HOH . F 3 HOH B 16 116 18 HOH HOH . F 3 HOH B 17 117 48 HOH HOH . F 3 HOH B 18 118 7 HOH HOH . F 3 HOH B 19 119 15 HOH HOH . F 3 HOH B 20 120 20 HOH HOH . F 3 HOH B 21 121 6 HOH HOH . F 3 HOH B 22 122 22 HOH HOH . F 3 HOH B 23 123 8 HOH HOH . F 3 HOH B 24 124 53 HOH HOH . F 3 HOH B 25 125 5 HOH HOH . F 3 HOH B 26 126 25 HOH HOH . F 3 HOH B 27 127 47 HOH HOH . F 3 HOH B 28 128 56 HOH HOH . F 3 HOH B 29 129 4 HOH HOH . F 3 HOH B 30 130 52 HOH HOH . F 3 HOH B 31 131 19 HOH HOH . F 3 HOH B 32 132 50 HOH HOH . F 3 HOH B 33 133 57 HOH HOH . F 3 HOH B 34 134 32 HOH HOH . F 3 HOH B 35 135 58 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol AG _atom_site.label_atom_id AG _atom_site.label_comp_id AG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 10.779 _atom_site.Cartn_y 27.824 _atom_site.Cartn_z 14.799 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 22.5 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id AG _atom_site.auth_comp_id AG _atom_site.auth_seq_id 102 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 105 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 241 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 1 #