data_6LCK # _model_server_result.job_id aSbYz3DwbU3dRv69w9ZJgg _model_server_result.datetime_utc '2024-11-08 20:57:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6lck # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":501}' # _entry.id 6LCK # _exptl.entry_id 6LCK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 301.249 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-nitrophenyl alpha-D-galactopyranoside' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6LCK _cell.length_a 118.631 _cell.length_b 205.288 _cell.length_c 163.898 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6LCK _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression B,C,E,F 1 1 B,C,E,F 1 2 A,D 1 3 A,D 1 4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_554 -x,y,-z-1/2 -1 0 0 0 1 0 0 0 -1 0 0 -81.949 3 'crystal symmetry operation' 5_445 x-1/2,y-1/2,z 1 0 0 0 1 0 0 0 1 -59.3155 -102.644 0 4 'crystal symmetry operation' 7_544 -x+1/2,y-1/2,-z-1/2 -1 0 0 0 1 0 0 0 -1 59.3155 -102.644 -81.949 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # _chem_comp.formula 'C12 H15 N O8' _chem_comp.formula_weight 301.249 _chem_comp.id 9PG _chem_comp.mon_nstd_flag n _chem_comp.name '4-nitrophenyl alpha-D-galactopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms '4-nitrophenyl alpha-D-galactoside;4-nitrophenyl D-galactoside;4-nitrophenyl galactoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O3 C3 9PG sing 1 n n O2 C2 9PG sing 2 n n C3 C2 9PG sing 3 n n C3 C4 9PG sing 4 n n C2 C1 9PG sing 5 n n C4 O4 9PG sing 6 n n C4 C5 9PG sing 7 n n O1 C1 9PG sing 8 n n O1 C12 9PG sing 9 n n C1 O5 9PG sing 10 n n C11 C12 9PG doub 11 n y C11 C10 9PG sing 12 n y C5 O5 9PG sing 13 n n C5 C6 9PG sing 14 n n C12 C13 9PG sing 15 n y C10 C9 9PG doub 16 n y C13 C14 9PG doub 17 n y O6 C6 9PG sing 18 n n C9 C14 9PG sing 19 n y C9 N 9PG sing 20 n n N O7 9PG doub 21 n n N O8 9PG sing 22 n n C6 H61 9PG sing 23 n n C6 H62 9PG sing 24 n n C5 H5 9PG sing 25 n n C4 H4 9PG sing 26 n n C3 H3 9PG sing 27 n n C2 H2 9PG sing 28 n n C1 H1 9PG sing 29 n n C14 H8 9PG sing 30 n n C13 H9 9PG sing 31 n n C11 H10 9PG sing 32 n n C10 H11 9PG sing 33 n n O2 HO2 9PG sing 34 n n O3 HO3 9PG sing 35 n n O4 HO4 9PG sing 36 n n O6 HO6 9PG sing 37 n n # _atom_sites.entry_id 6LCK _atom_sites.fract_transf_matrix[1][1] 0.008429 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004871 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006101 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 9PG A 1 501 2 9PG 9PG . E 2 9PG B 1 501 2 9PG 9PG . F 2 9PG C 1 501 2 9PG 9PG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C6 9PG . . . D 2 48.216 -0.471 -27.281 1 26.96 ? C6 9PG 501 A 1 HETATM 2 C C5 9PG . . . D 2 49.699 -0.17 -27.194 1 32.15 ? C5 9PG 501 A 1 HETATM 3 C C4 9PG . . . D 2 50.468 -1.333 -26.556 1 32.18 ? C4 9PG 501 A 1 HETATM 4 C C3 9PG . . . D 2 51.888 -0.946 -26.183 1 31.02 ? C3 9PG 501 A 1 HETATM 5 C C2 9PG . . . D 2 51.948 0.399 -25.456 1 32.66 ? C2 9PG 501 A 1 HETATM 6 C C1 9PG . . . D 2 51.336 1.491 -26.288 1 32.7 ? C1 9PG 501 A 1 HETATM 7 O O8 9PG . . . D 2 55.355 6.243 -30.212 1 76.54 ? O8 9PG 501 A 1 HETATM 8 N N 9PG . . . D 2 54.052 6.293 -29.523 1 69.76 ? N 9PG 501 A 1 HETATM 9 O O7 9PG . . . D 2 53.497 7.361 -29.311 1 65.78 ? O7 9PG 501 A 1 HETATM 10 C C9 9PG . . . D 2 53.459 5.074 -29.055 1 53.94 ? C9 9PG 501 A 1 HETATM 11 C C14 9PG . . . D 2 54.203 4.357 -28.116 1 45.48 ? C14 9PG 501 A 1 HETATM 12 C C13 9PG . . . D 2 53.679 3.177 -27.616 1 53.21 ? C13 9PG 501 A 1 HETATM 13 C C12 9PG . . . D 2 52.404 2.704 -28.047 1 58.01 ? C12 9PG 501 A 1 HETATM 14 C C11 9PG . . . D 2 51.662 3.442 -29.028 1 51.86 ? C11 9PG 501 A 1 HETATM 15 C C10 9PG . . . D 2 52.18 4.616 -29.525 1 55.31 ? C10 9PG 501 A 1 HETATM 16 O O1 9PG . . . D 2 51.909 1.459 -27.513 1 39.32 ? O1 9PG 501 A 1 HETATM 17 O O2 9PG . . . D 2 53.282 0.684 -25.184 1 36.3 ? O2 9PG 501 A 1 HETATM 18 O O3 9PG . . . D 2 52.517 -1.93 -25.337 1 25.39 ? O3 9PG 501 A 1 HETATM 19 O O4 9PG . . . D 2 49.791 -1.799 -25.395 1 36.98 ? O4 9PG 501 A 1 HETATM 20 O O5 9PG . . . D 2 49.885 1.152 -26.447 1 30.28 ? O5 9PG 501 A 1 HETATM 21 O O6 9PG . . . D 2 47.582 0.388 -28.309 1 28.29 ? O6 9PG 501 A 1 # _model_server_stats.io_time_ms 30 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 37 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 21 #