data_6LCM # _model_server_result.job_id WA1vjRasQknDhL_1DiXDxQ _model_server_result.datetime_utc '2024-10-10 11:25:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6lcm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 6LCM # _exptl.entry_id 6LCM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 558.835 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '5-amino-2,4,6-triiodobenzene-1,3-dicarboxylic acid' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6LCM _cell.length_a 49.136 _cell.length_b 49.136 _cell.length_c 141.831 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6LCM _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall 'P 4nw 2abw' _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_556 y,x,-z+1 0 1 0 1 0 0 0 0 -1 0 0 141.831 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # _chem_comp.formula 'C8 H4 I3 N O4' _chem_comp.formula_weight 558.835 _chem_comp.id I3C _chem_comp.mon_nstd_flag . _chem_comp.name '5-amino-2,4,6-triiodobenzene-1,3-dicarboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '5-Amino-2,4,6-triiodoisophthalic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag I3 C6 I3C sing 139 n n I2 C4 I3C sing 140 n n I1 C2 I3C sing 141 n n O8 C7 I3C doub 142 n n O9 C7 I3C sing 143 n n C10 C3 I3C sing 144 n n C10 O11 I3C sing 145 n n C10 O12 I3C doub 146 n n N13 C5 I3C sing 147 n n C1 C6 I3C doub 148 n y C1 C2 I3C sing 149 n y C1 C7 I3C sing 150 n n C6 C5 I3C sing 151 n y C5 C4 I3C doub 152 n y C4 C3 I3C sing 153 n y C3 C2 I3C doub 154 n y O9 HO9 I3C sing 155 n n N13 HN13 I3C sing 156 n n N13 HN1A I3C sing 157 n n O11 HO11 I3C sing 158 n n # _atom_sites.entry_id 6LCM _atom_sites.fract_transf_matrix[1][1] 0.020352 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020352 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007051 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 I3C C 1 201 1 I3C I3C . C 2 I3C C 1 202 3 I3C I3C . D 2 I3C C 1 203 4 I3C I3C . E 3 HOH C 1 301 4 HOH HOH . E 3 HOH C 2 302 40 HOH HOH . E 3 HOH C 3 303 3 HOH HOH . E 3 HOH C 4 304 22 HOH HOH . E 3 HOH C 5 305 8 HOH HOH . E 3 HOH C 6 306 21 HOH HOH . E 3 HOH C 7 307 16 HOH HOH . E 3 HOH C 8 308 10 HOH HOH . E 3 HOH C 9 309 51 HOH HOH . E 3 HOH C 10 310 45 HOH HOH . E 3 HOH C 11 311 26 HOH HOH . E 3 HOH C 12 312 13 HOH HOH . E 3 HOH C 13 313 5 HOH HOH . E 3 HOH C 14 314 11 HOH HOH . E 3 HOH C 15 315 42 HOH HOH . E 3 HOH C 16 316 9 HOH HOH . E 3 HOH C 17 317 44 HOH HOH . E 3 HOH C 18 318 23 HOH HOH . E 3 HOH C 19 319 34 HOH HOH . E 3 HOH C 20 320 25 HOH HOH . E 3 HOH C 21 321 12 HOH HOH . E 3 HOH C 22 322 35 HOH HOH . E 3 HOH C 23 323 7 HOH HOH . E 3 HOH C 24 324 2 HOH HOH . E 3 HOH C 25 325 47 HOH HOH . E 3 HOH C 26 326 24 HOH HOH . E 3 HOH C 27 327 52 HOH HOH . E 3 HOH C 28 328 17 HOH HOH . E 3 HOH C 29 329 20 HOH HOH . E 3 HOH C 30 330 6 HOH HOH . E 3 HOH C 31 331 32 HOH HOH . E 3 HOH C 32 332 31 HOH HOH . E 3 HOH C 33 333 29 HOH HOH . E 3 HOH C 34 334 38 HOH HOH . E 3 HOH C 35 335 19 HOH HOH . E 3 HOH C 36 336 18 HOH HOH . E 3 HOH C 37 337 27 HOH HOH . E 3 HOH C 38 338 53 HOH HOH . E 3 HOH C 39 339 48 HOH HOH . E 3 HOH C 40 340 46 HOH HOH . E 3 HOH C 41 341 14 HOH HOH . E 3 HOH C 42 342 1 HOH HOH . E 3 HOH C 43 343 28 HOH HOH . E 3 HOH C 44 344 33 HOH HOH . E 3 HOH C 45 345 36 HOH HOH . E 3 HOH C 46 346 15 HOH HOH . E 3 HOH C 47 347 39 HOH HOH . E 3 HOH C 48 348 37 HOH HOH . E 3 HOH C 49 349 41 HOH HOH . E 3 HOH C 50 350 50 HOH HOH . E 3 HOH C 51 351 30 HOH HOH . E 3 HOH C 52 352 49 HOH HOH . E 3 HOH C 53 353 43 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 I I3 I3C . . . C 2 9.427 15.877 60.361 1 125.37 ? I3 I3C 202 C 1 HETATM 2 I I2 I3C . . . C 2 10.483 13.03 55.149 1 210.03 ? I2 I3C 202 C 1 HETATM 3 I I1 I3C . . . C 2 12.411 10.61 60.373 1 105.67 ? I1 I3C 202 C 1 HETATM 4 O O8 I3C . . . C 2 12.097 13.675 62.044 1 91.68 ? O8 I3C 202 C 1 HETATM 5 O O9 I3C . . . C 2 10.065 12.902 62.249 1 92.3 ? O9 I3C 202 C 1 HETATM 6 C C10 I3C . . . C 2 11.898 10.912 57.165 1 95.93 ? C10 I3C 202 C 1 HETATM 7 N N13 I3C . . . C 2 9.452 15.243 57.227 1 95.38 ? N13 I3C 202 C 1 HETATM 8 C C1 I3C . . . C 2 10.894 13.216 60.004 1 100.15 ? C1 I3C 202 C 1 HETATM 9 C C6 I3C . . . C 2 10.245 14.234 59.321 1 101.23 ? C6 I3C 202 C 1 HETATM 10 C C5 I3C . . . C 2 10.13 14.178 57.944 1 98.65 ? C5 I3C 202 C 1 HETATM 11 C C4 I3C . . . C 2 10.662 13.109 57.248 1 99.18 ? C4 I3C 202 C 1 HETATM 12 C C3 I3C . . . C 2 11.309 12.092 57.93 1 100.06 ? C3 I3C 202 C 1 HETATM 13 C C2 I3C . . . C 2 11.427 12.144 59.306 1 101.55 ? C2 I3C 202 C 1 HETATM 14 C C7 I3C . . . C 2 11.026 13.268 61.523 1 94.1 ? C7 I3C 202 C 1 HETATM 15 O O11 I3C . . . C 2 11.188 9.901 56.918 1 93.59 ? O11 I3C 202 C 1 HETATM 16 O O12 I3C . . . C 2 13.096 10.952 56.78 1 93.28 ? O12 I3C 202 C 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 16 #