data_6LCP # _model_server_result.job_id RTaarNhQHEQ10wDSIZV-Mw _model_server_result.datetime_utc '2025-03-04 13:33:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6lcp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":2005}' # _entry.id 6LCP # _exptl.entry_id 6LCP _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 792.075 _entity.id 10 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description O-[(R)-{[(2R)-2,3-bis(octadecanoyloxy)propyl]oxy}(hydroxy)phosphoryl]-L-serine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6LCP _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6LCP _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 10 _struct_asym.id K _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 3 oligosaccharide 4 oligosaccharide 5 oligosaccharide 6 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 MAN MAN C1 O1 . O3 HO3 . sing 2 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 4 3 2 BMA NAG C1 O1 . O4 HO4 . sing 4 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing 5 ? 5 3 2 BMA NAG C1 O1 . O4 HO4 . sing 6 ? 5 4 3 MAN BMA C1 O1 . O3 HO3 . sing 7 ? 6 2 1 NAG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C MAN 1 C 1 MAN B 407 MAN 3 n C MAN 2 C 2 MAN B 408 MAN 4 n D NAG 1 D 1 NAG B 400 NAG 4 n D NAG 2 D 2 NAG B 401 NAG 4 n D BMA 3 D 3 BMA B 402 BMA 5 n E NAG 1 E 1 NAG B 403 NAG 5 n E NAG 2 E 2 NAG B 404 NAG 5 n E BMA 3 E 3 BMA B 405 BMA 5 n E MAN 4 E 4 MAN B 406 MAN 6 n F NAG 1 F 1 NAG B 410 NAG 6 n F NAG 2 F 2 NAG B 411 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 85 B CYS 85 1_555 B SG CYS 139 B CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? covale ? covale1 B ND2 ASN 131 B ASN 131 1_555 L C1 NAG . B NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale2 B ND2 ASN 189 B ASN 189 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale3 B ND2 ASN 219 B ASN 219 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale4 B ND2 ASN 241 B ASN 241 1_555 M C1 NAG . B NAG 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale5 B ND2 ASN 314 B ASN 314 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.478 ? covale ? covale6 C O3 MAN . C MAN 1 1_555 C C1 MAN . C MAN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale7 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.376 ? covale ? covale8 D O4 NAG . D NAG 2 1_555 D C1 BMA . D BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale9 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.376 ? covale ? covale10 E O4 NAG . E NAG 2 1_555 E C1 BMA . E BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale11 E O3 BMA . E BMA 3 1_555 E C1 MAN . E MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale12 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? metalc ? metalc1 A OD2 ASP 606 A ASP 606 1_555 G MG MG . A MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.968 ? metalc ? metalc2 A OD2 ASP 1061 A ASP 1061 1_555 G MG MG . A MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.667 ? # _chem_comp.formula 'C42 H82 N O10 P' _chem_comp.formula_weight 792.075 _chem_comp.id P5S _chem_comp.mon_nstd_flag . _chem_comp.name O-[(R)-{[(2R)-2,3-bis(octadecanoyloxy)propyl]oxy}(hydroxy)phosphoryl]-L-serine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'phosphatidyl serine' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CA C P5S sing 316 n n O C P5S doub 317 n n C OXT P5S sing 318 n n CA N P5S sing 319 n n N HN P5S sing 320 n n N HNA P5S sing 321 n n O19 C1 P5S sing 322 n n C1 C2 P5S sing 323 n n C1 H1 P5S sing 324 n n C1 H1A P5S sing 325 n n C2 O37 P5S sing 326 n n C2 C3 P5S sing 327 n n C2 H2 P5S sing 328 n n O16 C3 P5S sing 329 n n C3 H3 P5S sing 330 n n C3 H3A P5S sing 331 n n CB CA P5S sing 332 n n CA HA P5S sing 333 n n CB OG P5S sing 334 n n CB HB P5S sing 335 n n CB HBA P5S sing 336 n n P12 OG P5S sing 337 n n O16 P12 P5S sing 338 n n O13 P12 P5S doub 339 n n P12 O15 P5S sing 340 n n O15 HO15 P5S sing 341 n n C20 C17 P5S sing 342 n n O19 C17 P5S sing 343 n n C17 O18 P5S doub 344 n n C21 C20 P5S sing 345 n n C20 H20 P5S sing 346 n n C20 H20A P5S sing 347 n n C21 C22 P5S sing 348 n n C21 H21 P5S sing 349 n n C21 H21A P5S sing 350 n n C23 C22 P5S sing 351 n n C22 H22 P5S sing 352 n n C22 H22A P5S sing 353 n n C24 C23 P5S sing 354 n n C23 H23 P5S sing 355 n n C23 H23A P5S sing 356 n n C25 C24 P5S sing 357 n n C24 H24 P5S sing 358 n n C24 H24A P5S sing 359 n n C26 C25 P5S sing 360 n n C25 H25 P5S sing 361 n n C25 H25A P5S sing 362 n n C26 C27 P5S sing 363 n n C26 H26 P5S sing 364 n n C26 H26A P5S sing 365 n n C27 C28 P5S sing 366 n n C27 H27 P5S sing 367 n n C27 H27A P5S sing 368 n n C29 C28 P5S sing 369 n n C28 H28 P5S sing 370 n n C28 H28A P5S sing 371 n n C30 C29 P5S sing 372 n n C29 H29 P5S sing 373 n n C29 H29A P5S sing 374 n n C31 C30 P5S sing 375 n n C30 H30 P5S sing 376 n n C30 H30A P5S sing 377 n n C31 C32 P5S sing 378 n n C31 H31 P5S sing 379 n n C31 H31A P5S sing 380 n n C33 C32 P5S sing 381 n n C32 H32 P5S sing 382 n n C32 H32A P5S sing 383 n n C33 C34 P5S sing 384 n n C33 H33 P5S sing 385 n n C33 H33A P5S sing 386 n n C35 C34 P5S sing 387 n n C34 H34 P5S sing 388 n n C34 H34A P5S sing 389 n n C36 C35 P5S sing 390 n n C35 H35 P5S sing 391 n n C35 H35A P5S sing 392 n n C36 H36 P5S sing 393 n n C36 H36A P5S sing 394 n n C36 H36B P5S sing 395 n n C38 O37 P5S sing 396 n n O47 C38 P5S doub 397 n n C38 C39 P5S sing 398 n n C40 C39 P5S sing 399 n n C39 H39 P5S sing 400 n n C39 H39A P5S sing 401 n n C41 C40 P5S sing 402 n n C40 H40 P5S sing 403 n n C40 H40A P5S sing 404 n n C42 C41 P5S sing 405 n n C41 H41 P5S sing 406 n n C41 H41A P5S sing 407 n n C43 C42 P5S sing 408 n n C42 H42 P5S sing 409 n n C42 H42A P5S sing 410 n n C43 C44 P5S sing 411 n n C43 H43 P5S sing 412 n n C43 H43A P5S sing 413 n n C44 C45 P5S sing 414 n n C44 H44 P5S sing 415 n n C44 H44A P5S sing 416 n n C45 C46 P5S sing 417 n n C45 H45 P5S sing 418 n n C45 H45A P5S sing 419 n n C46 C48 P5S sing 420 n n C46 H46 P5S sing 421 n n C46 H46A P5S sing 422 n n C48 C49 P5S sing 423 n n C48 H48 P5S sing 424 n n C48 H48A P5S sing 425 n n C49 C50 P5S sing 426 n n C49 H49 P5S sing 427 n n C49 H49A P5S sing 428 n n C50 C51 P5S sing 429 n n C50 H50 P5S sing 430 n n C50 H50A P5S sing 431 n n C51 C52 P5S sing 432 n n C51 H51 P5S sing 433 n n C51 H51A P5S sing 434 n n C53 C52 P5S sing 435 n n C52 H52 P5S sing 436 n n C52 H52A P5S sing 437 n n C53 C54 P5S sing 438 n n C53 H53 P5S sing 439 n n C53 H53A P5S sing 440 n n C55 C54 P5S sing 441 n n C54 H54 P5S sing 442 n n C54 H54A P5S sing 443 n n C55 C56 P5S sing 444 n n C55 H55 P5S sing 445 n n C55 H55A P5S sing 446 n n C56 H56 P5S sing 447 n n C56 H56A P5S sing 448 n n C56 H56B P5S sing 449 n n OXT HXT P5S sing 450 n n # _atom_sites.entry_id 6LCP _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 7 MG A 1 2001 2001 MG MG . H 8 BEF A 1 2002 2002 BEF BEF . I 9 POV A 1 2003 2101 POV POV . J 9 POV A 1 2004 2201 POV POV . K 10 P5S A 1 2005 2301 P5S P5S . L 11 NAG B 1 501 399 NAG NAG . M 11 NAG B 1 509 409 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C P5S . . . K 10 156.184 161.625 154.587 1 33.46 ? C P5S 2005 A 1 HETATM 2 N N P5S . . . K 10 155.505 162.362 156.808 1 33.46 ? N P5S 2005 A 1 HETATM 3 O O P5S . . . K 10 156.605 162.645 154.071 1 33.46 ? O P5S 2005 A 1 HETATM 4 C C1 P5S . . . K 10 148.69 162.89 158.979 1 33.46 ? C1 P5S 2005 A 1 HETATM 5 C C2 P5S . . . K 10 149.015 162.191 157.67 1 33.46 ? C2 P5S 2005 A 1 HETATM 6 C C3 P5S . . . K 10 149.471 163.251 156.68 1 33.46 ? C3 P5S 2005 A 1 HETATM 7 C CA P5S . . . K 10 155.058 161.682 155.578 1 33.46 ? CA P5S 2005 A 1 HETATM 8 C CB P5S . . . K 10 153.861 162.402 154.973 1 33.46 ? CB P5S 2005 A 1 HETATM 9 O OG P5S . . . K 10 152.807 162.493 155.925 1 33.46 ? OG P5S 2005 A 1 HETATM 10 P P12 P5S . . . K 10 151.913 163.825 155.929 1 33.46 ? P12 P5S 2005 A 1 HETATM 11 O O13 P5S . . . K 10 152.798 164.969 156.206 1 33.46 ? O13 P5S 2005 A 1 HETATM 12 O O15 P5S . . . K 10 151.236 164.02 154.485 1 33.46 ? O15 P5S 2005 A 1 HETATM 13 O O16 P5S . . . K 10 150.763 163.721 157.047 1 33.46 ? O16 P5S 2005 A 1 HETATM 14 C C17 P5S . . . K 10 146.685 164.182 159.714 1 33.46 ? C17 P5S 2005 A 1 HETATM 15 O O18 P5S . . . K 10 146.891 163.886 160.877 1 33.46 ? O18 P5S 2005 A 1 HETATM 16 O O19 P5S . . . K 10 147.684 163.861 158.712 1 33.46 ? O19 P5S 2005 A 1 HETATM 17 C C20 P5S . . . K 10 145.407 164.867 159.305 1 33.46 ? C20 P5S 2005 A 1 HETATM 18 C C21 P5S . . . K 10 144.586 163.909 158.454 1 33.46 ? C21 P5S 2005 A 1 HETATM 19 C C22 P5S . . . K 10 143.333 164.58 157.911 1 33.46 ? C22 P5S 2005 A 1 HETATM 20 C C23 P5S . . . K 10 142.49 163.574 157.141 1 33.46 ? C23 P5S 2005 A 1 HETATM 21 C C24 P5S . . . K 10 141.512 164.274 156.206 1 33.46 ? C24 P5S 2005 A 1 HETATM 22 C C25 P5S . . . K 10 140.738 163.257 155.375 1 33.46 ? C25 P5S 2005 A 1 HETATM 23 C C26 P5S . . . K 10 140.015 163.923 154.21 1 33.46 ? C26 P5S 2005 A 1 HETATM 24 C C27 P5S . . . K 10 141.006 164.556 153.241 1 33.46 ? C27 P5S 2005 A 1 HETATM 25 C C28 P5S . . . K 10 140.31 165.003 151.961 1 33.46 ? C28 P5S 2005 A 1 HETATM 26 O O37 P5S . . . K 10 147.834 161.558 157.18 1 33.46 ? O37 P5S 2005 A 1 HETATM 27 C C38 P5S . . . K 10 148.1 160.459 156.264 1 33.46 ? C38 P5S 2005 A 1 HETATM 28 C C39 P5S . . . K 10 146.961 159.733 155.593 1 33.46 ? C39 P5S 2005 A 1 HETATM 29 C C40 P5S . . . K 10 145.633 160.29 156.083 1 33.46 ? C40 P5S 2005 A 1 HETATM 30 C C41 P5S . . . K 10 145.066 161.304 155.102 1 33.46 ? C41 P5S 2005 A 1 HETATM 31 C C42 P5S . . . K 10 143.625 160.957 154.762 1 33.46 ? C42 P5S 2005 A 1 HETATM 32 C C43 P5S . . . K 10 143.534 159.525 154.257 1 33.46 ? C43 P5S 2005 A 1 HETATM 33 C C44 P5S . . . K 10 142.411 159.371 153.242 1 33.46 ? C44 P5S 2005 A 1 HETATM 34 C C45 P5S . . . K 10 141.045 159.308 153.91 1 33.46 ? C45 P5S 2005 A 1 HETATM 35 C C46 P5S . . . K 10 140.002 159.903 152.973 1 33.46 ? C46 P5S 2005 A 1 HETATM 36 O O47 P5S . . . K 10 149.25 160.127 156.041 1 33.46 ? O47 P5S 2005 A 1 HETATM 37 C C48 P5S . . . K 10 138.59 159.48 153.351 1 33.46 ? C48 P5S 2005 A 1 HETATM 38 C C49 P5S . . . K 10 137.567 160.306 152.581 1 33.46 ? C49 P5S 2005 A 1 HETATM 39 C C50 P5S . . . K 10 137.898 160.354 151.095 1 33.46 ? C50 P5S 2005 A 1 HETATM 40 O OXT P5S . . . K 10 156.737 160.462 154.262 1 33.46 ? OXT P5S 2005 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 371 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 40 #