data_6LCY # _model_server_result.job_id MPSnbFJF_Vn1Mpnc4xcT0Q _model_server_result.datetime_utc '2025-03-06 07:15:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6lcy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 6LCY # _exptl.entry_id 6LCY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 660.035 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'INOSITOL HEXAKISPHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6LCY _cell.length_a 104.406 _cell.length_b 104.406 _cell.length_c 53.404 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6LCY _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _chem_comp.formula 'C6 H18 O24 P6' _chem_comp.formula_weight 660.035 _chem_comp.id IHP _chem_comp.mon_nstd_flag . _chem_comp.name 'INOSITOL HEXAKISPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'MYO-INOSITOL HEXAKISPHOSPHATE;INOSITOL 1,2,3,4,5,6-HEXAKISPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 IHP sing 152 n n C1 C6 IHP sing 153 n n C1 O11 IHP sing 154 n n C1 H1 IHP sing 155 n n C2 C3 IHP sing 156 n n C2 O12 IHP sing 157 n n C2 H2 IHP sing 158 n n C3 C4 IHP sing 159 n n C3 O13 IHP sing 160 n n C3 H3 IHP sing 161 n n C4 C5 IHP sing 162 n n C4 O14 IHP sing 163 n n C4 H4 IHP sing 164 n n C5 C6 IHP sing 165 n n C5 O15 IHP sing 166 n n C5 H5 IHP sing 167 n n C6 O16 IHP sing 168 n n C6 H6 IHP sing 169 n n O11 P1 IHP sing 170 n n P1 O21 IHP doub 171 n n P1 O31 IHP sing 172 n n P1 O41 IHP sing 173 n n O31 H31 IHP sing 174 n n O41 H41 IHP sing 175 n n O12 P2 IHP sing 176 n n P2 O22 IHP doub 177 n n P2 O32 IHP sing 178 n n P2 O42 IHP sing 179 n n O32 H32 IHP sing 180 n n O42 H42 IHP sing 181 n n O13 P3 IHP sing 182 n n P3 O23 IHP doub 183 n n P3 O33 IHP sing 184 n n P3 O43 IHP sing 185 n n O33 H33 IHP sing 186 n n O43 H43 IHP sing 187 n n O14 P4 IHP sing 188 n n P4 O24 IHP doub 189 n n P4 O34 IHP sing 190 n n P4 O44 IHP sing 191 n n O34 H34 IHP sing 192 n n O44 H44 IHP sing 193 n n O15 P5 IHP sing 194 n n P5 O25 IHP doub 195 n n P5 O35 IHP sing 196 n n P5 O45 IHP sing 197 n n O35 H35 IHP sing 198 n n O45 H45 IHP sing 199 n n O16 P6 IHP sing 200 n n P6 O26 IHP doub 201 n n P6 O36 IHP sing 202 n n P6 O46 IHP sing 203 n n O36 H36 IHP sing 204 n n O46 H46 IHP sing 205 n n # _atom_sites.entry_id 6LCY _atom_sites.fract_transf_matrix[1][1] 0.009578 _atom_sites.fract_transf_matrix[1][2] 0.00553 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01106 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018725 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IHP A 1 501 1 IHP IHP . C 2 IHP A 1 502 2 IHP IHP . D 3 HOH A 1 601 20 HOH HOH . D 3 HOH A 2 602 22 HOH HOH . D 3 HOH A 3 603 23 HOH HOH . D 3 HOH A 4 604 2 HOH HOH . D 3 HOH A 5 605 10 HOH HOH . D 3 HOH A 6 606 8 HOH HOH . D 3 HOH A 7 607 26 HOH HOH . D 3 HOH A 8 608 4 HOH HOH . D 3 HOH A 9 609 29 HOH HOH . D 3 HOH A 10 610 16 HOH HOH . D 3 HOH A 11 611 3 HOH HOH . D 3 HOH A 12 612 13 HOH HOH . D 3 HOH A 13 613 7 HOH HOH . D 3 HOH A 14 614 15 HOH HOH . D 3 HOH A 15 615 21 HOH HOH . D 3 HOH A 16 616 9 HOH HOH . D 3 HOH A 17 617 12 HOH HOH . D 3 HOH A 18 618 32 HOH HOH . D 3 HOH A 19 619 17 HOH HOH . D 3 HOH A 20 620 24 HOH HOH . D 3 HOH A 21 621 5 HOH HOH . D 3 HOH A 22 622 6 HOH HOH . D 3 HOH A 23 623 1 HOH HOH . D 3 HOH A 24 624 33 HOH HOH . D 3 HOH A 25 625 25 HOH HOH . D 3 HOH A 26 626 31 HOH HOH . D 3 HOH A 27 627 28 HOH HOH . D 3 HOH A 28 628 34 HOH HOH . D 3 HOH A 29 629 14 HOH HOH . D 3 HOH A 30 630 30 HOH HOH . D 3 HOH A 31 631 19 HOH HOH . D 3 HOH A 32 632 11 HOH HOH . D 3 HOH A 33 633 18 HOH HOH . D 3 HOH A 34 634 27 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 IHP . . . B 2 55.672 -20.13 22.018 1 38.17 ? C1 IHP 501 A 1 HETATM 2 C C2 IHP . . . B 2 56.91 -20.822 21.453 1 37.11 ? C2 IHP 501 A 1 HETATM 3 C C3 IHP . . . B 2 56.52 -22.276 21.126 1 38.41 ? C3 IHP 501 A 1 HETATM 4 C C4 IHP . . . B 2 55.368 -22.321 20.094 1 35.32 ? C4 IHP 501 A 1 HETATM 5 C C5 IHP . . . B 2 54.122 -21.55 20.575 1 38.19 ? C5 IHP 501 A 1 HETATM 6 C C6 IHP . . . B 2 54.486 -20.114 21.016 1 40.45 ? C6 IHP 501 A 1 HETATM 7 O O11 IHP . . . B 2 56.018 -18.746 22.27 1 45.75 ? O11 IHP 501 A 1 HETATM 8 P P1 IHP . . . B 2 56.217 -18.186 23.781 1 44.45 ? P1 IHP 501 A 1 HETATM 9 O O21 IHP . . . B 2 54.773 -17.764 24.119 1 46.46 ? O21 IHP 501 A 1 HETATM 10 O O31 IHP . . . B 2 56.698 -19.289 24.665 1 48.17 ? O31 IHP 501 A 1 HETATM 11 O O41 IHP . . . B 2 57.12 -16.973 23.699 1 51.81 ? O41 IHP 501 A 1 HETATM 12 O O12 IHP . . . B 2 57.386 -20.188 20.255 1 43.35 ? O12 IHP 501 A 1 HETATM 13 P P2 IHP . . . B 2 58.861 -19.501 20.126 1 40.43 ? P2 IHP 501 A 1 HETATM 14 O O22 IHP . . . B 2 58.768 -18.034 20.459 1 44.32 ? O22 IHP 501 A 1 HETATM 15 O O32 IHP . . . B 2 59.197 -19.789 18.676 1 41 ? O32 IHP 501 A 1 HETATM 16 O O42 IHP . . . B 2 59.657 -20.339 21.096 1 38.64 ? O42 IHP 501 A 1 HETATM 17 O O13 IHP . . . B 2 57.662 -22.912 20.538 1 34.87 ? O13 IHP 501 A 1 HETATM 18 P P3 IHP . . . B 2 58.716 -23.785 21.393 1 37.26 ? P3 IHP 501 A 1 HETATM 19 O O23 IHP . . . B 2 57.979 -24.868 22.109 1 37.15 ? O23 IHP 501 A 1 HETATM 20 O O33 IHP . . . B 2 59.627 -24.386 20.317 1 38.93 ? O33 IHP 501 A 1 HETATM 21 O O43 IHP . . . B 2 59.545 -22.827 22.165 1 40.29 ? O43 IHP 501 A 1 HETATM 22 O O14 IHP . . . B 2 55.031 -23.672 19.813 1 35.03 ? O14 IHP 501 A 1 HETATM 23 P P4 IHP . . . B 2 55.159 -24.282 18.309 1 30.1 ? P4 IHP 501 A 1 HETATM 24 O O24 IHP . . . B 2 53.844 -24.17 17.633 1 28.6 ? O24 IHP 501 A 1 HETATM 25 O O34 IHP . . . B 2 56.187 -23.482 17.574 1 31.06 ? O34 IHP 501 A 1 HETATM 26 O O44 IHP . . . B 2 55.696 -25.665 18.529 1 25.72 ? O44 IHP 501 A 1 HETATM 27 O O15 IHP . . . B 2 53.15 -21.541 19.527 1 40.21 ? O15 IHP 501 A 1 HETATM 28 P P5 IHP . . . B 2 51.789 -22.391 19.655 1 35.5 ? P5 IHP 501 A 1 HETATM 29 O O25 IHP . . . B 2 51.791 -23.348 20.788 1 36.61 ? O25 IHP 501 A 1 HETATM 30 O O35 IHP . . . B 2 51.613 -22.983 18.27 1 30.27 ? O35 IHP 501 A 1 HETATM 31 O O45 IHP . . . B 2 50.742 -21.289 19.888 1 39.05 ? O45 IHP 501 A 1 HETATM 32 O O16 IHP . . . B 2 53.337 -19.524 21.616 1 43.82 ? O16 IHP 501 A 1 HETATM 33 P P6 IHP . . . B 2 52.655 -18.167 20.981 1 50.12 ? P6 IHP 501 A 1 HETATM 34 O O26 IHP . . . B 2 52.491 -18.336 19.486 1 47.9 ? O26 IHP 501 A 1 HETATM 35 O O36 IHP . . . B 2 51.302 -18.113 21.659 1 40.01 ? O36 IHP 501 A 1 HETATM 36 O O46 IHP . . . B 2 53.55 -17.058 21.457 1 52.39 ? O46 IHP 501 A 1 HETATM 37 H H1 IHP . . . B 2 55.402 -20.615 22.813 1 45.8 ? H1 IHP 501 A 1 HETATM 38 H H2 IHP . . . B 2 57.623 -20.774 22.109 1 44.53 ? H2 IHP 501 A 1 HETATM 39 H H3 IHP . . . B 2 56.233 -22.719 21.94 1 46.09 ? H3 IHP 501 A 1 HETATM 40 H H4 IHP . . . B 2 55.68 -21.884 19.286 1 42.39 ? H4 IHP 501 A 1 HETATM 41 H H5 IHP . . . B 2 53.75 -21.995 21.352 1 45.82 ? H5 IHP 501 A 1 HETATM 42 H H6 IHP . . . B 2 54.762 -19.595 20.244 1 48.54 ? H6 IHP 501 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 245 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 42 #