data_6LDF # _model_server_result.job_id RW9Y3ITYDljn4dmTR_TDgQ _model_server_result.datetime_utc '2025-01-03 21:54:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ldf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":208}' # _entry.id 6LDF # _exptl.entry_id 6LDF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6LDF _cell.length_a 53.748 _cell.length_b 53.748 _cell.length_c 253.813 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6LDF _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_664 -y+1,-x+1,-z-1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 26.874 46.547133 -42.302167 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 98 A CYS 98 1_555 C CAB HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.76 ? covale ? covale2 A SG CYS 101 A CYS 101 1_555 C CAC HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.716 ? covale ? covale3 B SG CYS 98 C CYS 98 1_555 M CAB HEC . C HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.739 ? covale ? covale4 B SG CYS 101 C CYS 101 1_555 M CAC HEC . C HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.744 ? metalc ? metalc1 A O ALA 1 A ALA 1 1_555 J ZN ZN . A ZN 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.527 ? metalc ? metalc2 A SD MET 7 A MET 7 1_555 C FE HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc3 A OE2 GLU 8 A GLU 8 1_555 G ZN ZN . A ZN 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? metalc ? metalc4 A OE2 GLU 8 A GLU 8 1_555 G ZN ZN . A ZN 205 8_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? metalc ? metalc5 A OD1 ASP 12 A ASP 12 1_555 G ZN ZN . A ZN 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.686 ? metalc ? metalc6 A OD2 ASP 12 A ASP 12 1_555 G ZN ZN . A ZN 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc7 A OD1 ASP 12 A ASP 12 1_555 G ZN ZN . A ZN 205 8_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.686 ? metalc ? metalc8 A OD2 ASP 12 A ASP 12 1_555 G ZN ZN . A ZN 205 8_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc9 A OD2 ASP 39 A ASP 39 1_555 J ZN ZN . A ZN 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc10 A NE2 HIS 59 A HIS 59 1_555 I ZN ZN . A ZN 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc11 A NE2 HIS 63 A HIS 63 1_555 N ZN ZN . C ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? metalc ? metalc12 A NE2 HIS 73 A HIS 73 1_555 D ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? metalc ? metalc13 A OD1 ASP 74 A ASP 74 1_555 D ZN ZN . A ZN 202 10_664 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? metalc ? metalc14 A NE2 HIS 77 A HIS 77 1_555 D ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? metalc ? metalc15 A OE1 GLU 81 A GLU 81 1_555 H ZN ZN . A ZN 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.688 ? metalc ? metalc16 A OE2 GLU 81 A GLU 81 1_555 H ZN ZN . A ZN 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? metalc ? metalc17 A NE2 HIS 93 A HIS 93 1_555 E ZN ZN . A ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.943 ? metalc ? metalc18 A ND1 HIS 100 A HIS 100 1_555 F ZN ZN . A ZN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? metalc ? metalc19 A NE2 HIS 102 A HIS 102 1_555 C FE HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.956 ? metalc ? metalc20 D ZN ZN . A ZN 202 1_555 B NE2 HIS 63 C HIS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? metalc ? metalc21 E ZN ZN . A ZN 203 1_555 Q O HOH . A HOH 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc22 E ZN ZN . A ZN 203 10_664 B ND1 HIS 100 C HIS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc23 F ZN ZN . A ZN 204 10_664 B NE2 HIS 93 C HIS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? metalc ? metalc24 F ZN ZN . A ZN 204 1_555 R O HOH . C HOH 337 10_664 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? metalc ? metalc25 H ZN ZN . A ZN 206 1_555 Q O HOH . A HOH 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc26 H ZN ZN . A ZN 206 1_555 Q O HOH . A HOH 337 10_664 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? metalc ? metalc27 H ZN ZN . A ZN 206 10_664 B NE2 HIS 59 C HIS 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc28 I ZN ZN . A ZN 207 10_664 B OE1 GLU 81 C GLU 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.697 ? metalc ? metalc29 I ZN ZN . A ZN 207 1_555 R O HOH . C HOH 322 10_664 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? metalc ? metalc30 J ZN ZN . A ZN 208 10_554 B OD2 ASP 2 C ASP 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.652 ? metalc ? metalc31 B SD MET 7 C MET 7 1_555 M FE HEC . C HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc32 B NE2 HIS 73 C HIS 73 1_555 N ZN ZN . C ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? metalc ? metalc33 B OD1 ASP 74 C ASP 74 1_555 N ZN ZN . C ZN 202 10_664 ? ? ? ? ? ? ? ? ? ? ? ? 1.884 ? metalc ? metalc34 B NE2 HIS 77 C HIS 77 1_555 N ZN ZN . C ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? metalc ? metalc35 B NE2 HIS 102 C HIS 102 1_555 M FE HEC . C HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.915 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6LDF _atom_sites.fract_transf_matrix[1][1] 0.018605 _atom_sites.fract_transf_matrix[1][2] 0.010742 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021484 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00394 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEC A 1 201 150 HEC HEM . D 3 ZN A 1 202 2 ZN ZN . E 3 ZN A 1 203 3 ZN ZN . F 3 ZN A 1 204 4 ZN ZN . G 3 ZN A 1 205 5 ZN ZN . H 3 ZN A 1 206 6 ZN ZN . I 3 ZN A 1 207 7 ZN ZN . J 3 ZN A 1 208 8 ZN ZN . K 4 CL A 1 209 3 CL CL . L 4 CL A 1 210 4 CL CL . M 2 HEC C 1 201 150 HEC HEM . N 3 ZN C 1 202 1 ZN ZN . O 4 CL C 1 203 1 CL CL . P 4 CL C 1 204 2 CL CL . Q 5 HOH A 1 301 79 HOH HOH . Q 5 HOH A 2 302 80 HOH HOH . Q 5 HOH A 3 303 41 HOH HOH . Q 5 HOH A 4 304 53 HOH HOH . Q 5 HOH A 5 305 10 HOH HOH . Q 5 HOH A 6 306 66 HOH HOH . Q 5 HOH A 7 307 12 HOH HOH . Q 5 HOH A 8 308 15 HOH HOH . Q 5 HOH A 9 309 31 HOH HOH . Q 5 HOH A 10 310 22 HOH HOH . Q 5 HOH A 11 311 71 HOH HOH . Q 5 HOH A 12 312 5 HOH HOH . Q 5 HOH A 13 313 39 HOH HOH . Q 5 HOH A 14 314 19 HOH HOH . Q 5 HOH A 15 315 56 HOH HOH . Q 5 HOH A 16 316 48 HOH HOH . Q 5 HOH A 17 317 33 HOH HOH . Q 5 HOH A 18 318 47 HOH HOH . Q 5 HOH A 19 319 76 HOH HOH . Q 5 HOH A 20 320 29 HOH HOH . Q 5 HOH A 21 321 73 HOH HOH . Q 5 HOH A 22 322 78 HOH HOH . Q 5 HOH A 23 323 21 HOH HOH . Q 5 HOH A 24 324 40 HOH HOH . Q 5 HOH A 25 325 70 HOH HOH . Q 5 HOH A 26 326 49 HOH HOH . Q 5 HOH A 27 327 46 HOH HOH . Q 5 HOH A 28 328 26 HOH HOH . Q 5 HOH A 29 329 32 HOH HOH . Q 5 HOH A 30 330 7 HOH HOH . Q 5 HOH A 31 331 2 HOH HOH . Q 5 HOH A 32 332 92 HOH HOH . Q 5 HOH A 33 333 74 HOH HOH . Q 5 HOH A 34 334 18 HOH HOH . Q 5 HOH A 35 335 14 HOH HOH . Q 5 HOH A 36 336 42 HOH HOH . Q 5 HOH A 37 337 23 HOH HOH . Q 5 HOH A 38 338 93 HOH HOH . Q 5 HOH A 39 339 6 HOH HOH . Q 5 HOH A 40 340 89 HOH HOH . Q 5 HOH A 41 341 11 HOH HOH . Q 5 HOH A 42 342 45 HOH HOH . Q 5 HOH A 43 343 88 HOH HOH . Q 5 HOH A 44 344 55 HOH HOH . Q 5 HOH A 45 345 54 HOH HOH . Q 5 HOH A 46 346 25 HOH HOH . Q 5 HOH A 47 347 17 HOH HOH . Q 5 HOH A 48 348 77 HOH HOH . Q 5 HOH A 49 349 90 HOH HOH . R 5 HOH C 1 301 60 HOH HOH . R 5 HOH C 2 302 34 HOH HOH . R 5 HOH C 3 303 35 HOH HOH . R 5 HOH C 4 304 8 HOH HOH . R 5 HOH C 5 305 37 HOH HOH . R 5 HOH C 6 306 75 HOH HOH . R 5 HOH C 7 307 30 HOH HOH . R 5 HOH C 8 308 58 HOH HOH . R 5 HOH C 9 309 9 HOH HOH . R 5 HOH C 10 310 69 HOH HOH . R 5 HOH C 11 311 91 HOH HOH . R 5 HOH C 12 312 27 HOH HOH . R 5 HOH C 13 313 28 HOH HOH . R 5 HOH C 14 314 38 HOH HOH . R 5 HOH C 15 315 20 HOH HOH . R 5 HOH C 16 316 24 HOH HOH . R 5 HOH C 17 317 101 HOH HOH . R 5 HOH C 18 318 4 HOH HOH . R 5 HOH C 19 319 50 HOH HOH . R 5 HOH C 20 320 36 HOH HOH . R 5 HOH C 21 321 61 HOH HOH . R 5 HOH C 22 322 3 HOH HOH . R 5 HOH C 23 323 81 HOH HOH . R 5 HOH C 24 324 96 HOH HOH . R 5 HOH C 25 325 43 HOH HOH . R 5 HOH C 26 326 67 HOH HOH . R 5 HOH C 27 327 44 HOH HOH . R 5 HOH C 28 328 51 HOH HOH . R 5 HOH C 29 329 72 HOH HOH . R 5 HOH C 30 330 52 HOH HOH . R 5 HOH C 31 331 59 HOH HOH . R 5 HOH C 32 332 84 HOH HOH . R 5 HOH C 33 333 63 HOH HOH . R 5 HOH C 34 334 95 HOH HOH . R 5 HOH C 35 335 103 HOH HOH . R 5 HOH C 36 336 94 HOH HOH . R 5 HOH C 37 337 1 HOH HOH . R 5 HOH C 38 338 16 HOH HOH . R 5 HOH C 39 339 102 HOH HOH . R 5 HOH C 40 340 13 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id J _atom_site.label_entity_id 3 _atom_site.Cartn_x 6.58 _atom_site.Cartn_y 0.212 _atom_site.Cartn_z -13.166 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 54.78 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 208 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 34 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #