data_6LEM
#
_model_server_result.job_id            tY1CyidrfczhLWW5MVvs7A 
_model_server_result.datetime_utc      '2024-10-19 02:24:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6lem 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":701}' 
#
_entry.id    6LEM 
#
_exptl.entry_id    6LEM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              287.395 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2~{S},3~{S},4~{R},5~{R})-2-nonyl-4,5-bis(oxidanyl)piperidine-3-carboxylic acid' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          124.97 
_cell.angle_gamma         90 
_cell.entry_id            6LEM 
_cell.length_a            168.361 
_cell.length_b            76.404 
_cell.length_c            126.4 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6LEM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
_chem_comp.formula           'C15 H29 N O4' 
_chem_comp.formula_weight    287.395 
_chem_comp.id                E9O 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2~{S},3~{S},4~{R},5~{R})-2-nonyl-4,5-bis(oxidanyl)piperidine-3-carboxylic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O3 C3 E9O sing 83 n n 
C3 C2 E9O sing 84 n n 
C3 C4 E9O sing 85 n n 
C2 N E9O sing 86 n n 
C4 O4 E9O sing 87 n n 
C4 C5 E9O sing 88 n n 
N C7 E9O sing 89 n n 
C5 C7 E9O sing 90 n n 
C5 C6 E9O sing 91 n n 
C7 C8 E9O sing 92 n n 
C6 O61 E9O doub 93 n n 
C6 O62 E9O sing 94 n n 
C8 C9 E9O sing 95 n n 
C9 C10 E9O sing 96 n n 
C10 C1 E9O sing 97 n n 
C1 C11 E9O sing 98 n n 
C11 C12 E9O sing 99 n n 
C12 C13 E9O sing 100 n n 
C13 C14 E9O sing 101 n n 
C14 C15 E9O sing 102 n n 
C2 H1 E9O sing 103 n n 
C2 H2 E9O sing 104 n n 
C3 H3 E9O sing 105 n n 
O3 H4 E9O sing 106 n n 
N H5 E9O sing 107 n n 
C7 H7 E9O sing 108 n n 
C5 H8 E9O sing 109 n n 
O62 H9 E9O sing 110 n n 
C4 H10 E9O sing 111 n n 
O4 H11 E9O sing 112 n n 
C8 H12 E9O sing 113 n n 
C8 H13 E9O sing 114 n n 
C9 H14 E9O sing 115 n n 
C9 H15 E9O sing 116 n n 
C10 H16 E9O sing 117 n n 
C10 H17 E9O sing 118 n n 
C1 H18 E9O sing 119 n n 
C1 H19 E9O sing 120 n n 
C11 H20 E9O sing 121 n n 
C11 H21 E9O sing 122 n n 
C12 H22 E9O sing 123 n n 
C12 H23 E9O sing 124 n n 
C13 H24 E9O sing 125 n n 
C13 H25 E9O sing 126 n n 
C14 H26 E9O sing 127 n n 
C14 H27 E9O sing 128 n n 
C15 H28 E9O sing 129 n n 
C15 H29 E9O sing 130 n n 
C15 H30 E9O sing 131 n n 
#
_atom_sites.entry_id                     6LEM 
_atom_sites.fract_transf_matrix[1][1]    0.00594 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004154 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013088 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009654 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 E9O A 1 701 1 E9O C9 . 
D 3 E9O B 1 701 2 E9O C9 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C2 E9O . . . D 3 13.77 -6.574 21.48 1 85.69 ? C2 E9O 701 B 1 
HETATM 2 C C3 E9O . . . D 3 12.527 -6.586 20.603 1 84.3 ? C3 E9O 701 B 1 
HETATM 3 O O3 E9O . . . D 3 11.51 -5.757 21.177 1 83.73 ? O3 E9O 701 B 1 
HETATM 4 N N E9O . . . D 3 14.775 -7.458 20.87 1 86.35 ? N E9O 701 B 1 
HETATM 5 C C7 E9O . . . D 3 15.219 -6.967 19.547 1 84.98 ? C7 E9O 701 B 1 
HETATM 6 C C5 E9O . . . D 3 14.026 -6.847 18.587 1 83.47 ? C5 E9O 701 B 1 
HETATM 7 C C6 E9O . . . D 3 14.353 -6.157 17.285 1 82.01 ? C6 E9O 701 B 1 
HETATM 8 O O62 E9O . . . D 3 13.44 -5.497 16.74 1 80.66 ? O62 E9O 701 B 1 
HETATM 9 C C4 E9O . . . D 3 12.875 -6.065 19.218 1 82.82 ? C4 E9O 701 B 1 
HETATM 10 O O4 E9O . . . D 3 11.717 -6.138 18.378 1 81.65 ? O4 E9O 701 B 1 
HETATM 11 O O61 E9O . . . D 3 15.485 -6.25 16.761 1 82.29 ? O61 E9O 701 B 1 
HETATM 12 C C8 E9O . . . D 3 16.281 -7.944 19.054 1 85.95 ? C8 E9O 701 B 1 
HETATM 13 C C9 E9O . . . D 3 17.609 -7.238 18.804 1 85.9 ? C9 E9O 701 B 1 
HETATM 14 C C10 E9O . . . D 3 18.532 -8.107 17.96 1 86.5 ? C10 E9O 701 B 1 
HETATM 15 C C1 E9O . . . D 3 19.666 -7.281 17.366 1 86.13 ? C1 E9O 701 B 1 
HETATM 16 C C11 E9O . . . D 3 20.711 -8.183 16.723 1 87 ? C11 E9O 701 B 1 
HETATM 17 C C12 E9O . . . D 3 21.932 -7.387 16.277 1 86.96 ? C12 E9O 701 B 1 
HETATM 18 C C13 E9O . . . D 3 23.059 -8.32 15.849 1 88.15 ? C13 E9O 701 B 1 
HETATM 19 C C14 E9O . . . D 3 23.397 -9.316 16.954 1 90.04 ? C14 E9O 701 B 1 
HETATM 20 C C15 E9O . . . D 3 24.547 -10.214 16.554 1 91.38 ? C15 E9O 701 B 1 
#
_model_server_stats.io_time_ms              176 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    29 
_model_server_stats.query_time_ms           291 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           20 
#