data_6LFL # _model_server_result.job_id 49Nd5KLmp6EL99K3JR4FhQ _model_server_result.datetime_utc '2024-12-23 10:37:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6lfl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1201}' # _entry.id 6LFL # _exptl.entry_id 6LFL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 426.466 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-[[3,4-bis(oxidanylidene)-2-[[(1~{R})-1-(4-propan-2-ylfuran-2-yl)propyl]amino]cyclobuten-1-yl]amino]-~{N},~{N}-dimethyl-3-oxidanyl-pyridine-2-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.16 _cell.angle_gamma 90 _cell.entry_id 6LFL _cell.length_a 41.3 _cell.length_b 108.46 _cell.length_c 82.6 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6LFL _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 83 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 119 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 160 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 196 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.033 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C22 H26 N4 O5' _chem_comp.formula_weight 426.466 _chem_comp.id EBX _chem_comp.mon_nstd_flag . _chem_comp.name 4-[[3,4-bis(oxidanylidene)-2-[[(1~{R})-1-(4-propan-2-ylfuran-2-yl)propyl]amino]cyclobuten-1-yl]amino]-~{N},~{N}-dimethyl-3-oxidanyl-pyridine-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C16 C15 EBX sing 83 n n C15 C13 EBX sing 84 n n C13 N4 EBX sing 85 n n C13 C14 EBX sing 86 n n N4 C10 EBX sing 87 n n C10 C11 EBX sing 88 n n C10 C9 EBX doub 89 n n C11 O4 EBX doub 90 n n C11 C12 EBX sing 91 n n C4 C3 EBX doub 92 n y C4 C5 EBX sing 93 n y N3 C9 EBX sing 94 n n N3 C3 EBX sing 95 n n C9 C12 EBX sing 96 n n C12 O3 EBX doub 97 n n C14 O5 EBX sing 98 n y C14 C19 EBX doub 99 n y C3 C2 EBX sing 100 n y C5 N1 EBX doub 101 n y O5 C17 EBX sing 102 n y C2 O1 EBX sing 103 n n C2 C1 EBX doub 104 n y N1 C1 EBX sing 105 n y C19 C18 EBX sing 106 n y C17 C18 EBX doub 107 n y C1 C6 EBX sing 108 n n O2 C6 EBX doub 109 n n C18 C20 EBX sing 110 n n C6 N2 EBX sing 111 n n C21 C20 EBX sing 112 n n C20 C22 EBX sing 113 n n N2 C7 EBX sing 114 n n N2 C8 EBX sing 115 n n C4 H1 EBX sing 116 n n C5 H2 EBX sing 117 n n C7 H4 EBX sing 118 n n C7 H5 EBX sing 119 n n C7 H6 EBX sing 120 n n C8 H7 EBX sing 121 n n C8 H8 EBX sing 122 n n C8 H9 EBX sing 123 n n C13 H10 EBX sing 124 n n C15 H11 EBX sing 125 n n C15 H12 EBX sing 126 n n C16 H13 EBX sing 127 n n C16 H14 EBX sing 128 n n C16 H15 EBX sing 129 n n C17 H16 EBX sing 130 n n C19 H17 EBX sing 131 n n C20 H18 EBX sing 132 n n C21 H19 EBX sing 133 n n C21 H20 EBX sing 134 n n C21 H21 EBX sing 135 n n C22 H22 EBX sing 136 n n C22 H23 EBX sing 137 n n C22 H24 EBX sing 138 n n N3 H25 EBX sing 139 n n N4 H26 EBX sing 140 n n O1 H3 EBX sing 141 n n # _atom_sites.entry_id 6LFL _atom_sites.fract_transf_matrix[1][1] 0.024213 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00049 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00922 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012109 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id EBX _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 1201 _pdbx_nonpoly_scheme.auth_seq_num 350 _pdbx_nonpoly_scheme.pdb_mon_id EBX _pdbx_nonpoly_scheme.auth_mon_id SB7 _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EBX . . . B 2 46.467 -29.356 188.491 1 104.04 ? C1 EBX 1201 A 1 HETATM 2 C C2 EBX . . . B 2 47.633 -30.039 188.072 1 105.04 ? C2 EBX 1201 A 1 HETATM 3 C C3 EBX . . . B 2 48.625 -29.352 187.343 1 104.65 ? C3 EBX 1201 A 1 HETATM 4 C C4 EBX . . . B 2 48.386 -28.038 186.919 1 104.1 ? C4 EBX 1201 A 1 HETATM 5 C C5 EBX . . . B 2 47.224 -27.384 187.348 1 103.13 ? C5 EBX 1201 A 1 HETATM 6 C C6 EBX . . . B 2 45.469 -30.006 189.244 1 102.99 ? C6 EBX 1201 A 1 HETATM 7 C C7 EBX . . . B 2 46.782 -29.527 191.298 1 103.98 ? C7 EBX 1201 A 1 HETATM 8 C C8 EBX . . . B 2 44.571 -30.798 191.363 1 103.99 ? C8 EBX 1201 A 1 HETATM 9 C C11 EBX . . . B 2 52.904 -29.439 186.886 1 103.16 ? C11 EBX 1201 A 1 HETATM 10 C C10 EBX . . . B 2 52.093 -30.55 186.665 1 100.47 ? C10 EBX 1201 A 1 HETATM 11 C C12 EBX . . . B 2 51.784 -28.681 187.231 1 103.2 ? C12 EBX 1201 A 1 HETATM 12 C C13 EBX . . . B 2 53.624 -32.367 186.238 1 90.59 ? C13 EBX 1201 A 1 HETATM 13 C C14 EBX . . . B 2 53.886 -33.433 187.323 1 90.5 ? C14 EBX 1201 A 1 HETATM 14 C C15 EBX . . . B 2 53.981 -32.984 184.871 1 85.99 ? C15 EBX 1201 A 1 HETATM 15 C C16 EBX . . . B 2 53.605 -32.081 183.701 1 83.45 ? C16 EBX 1201 A 1 HETATM 16 C C17 EBX . . . B 2 54.948 -34.911 188.457 1 91.8 ? C17 EBX 1201 A 1 HETATM 17 C C18 EBX . . . B 2 53.71 -34.818 188.933 1 91.93 ? C18 EBX 1201 A 1 HETATM 18 C C19 EBX . . . B 2 53.027 -33.902 188.232 1 90.73 ? C19 EBX 1201 A 1 HETATM 19 C C20 EBX . . . B 2 53.231 -35.673 190.143 1 92.79 ? C20 EBX 1201 A 1 HETATM 20 C C21 EBX . . . B 2 52.875 -37.11 189.737 1 93.2 ? C21 EBX 1201 A 1 HETATM 21 C C22 EBX . . . B 2 52.107 -35.03 190.971 1 91.6 ? C22 EBX 1201 A 1 HETATM 22 C C9 EBX . . . B 2 50.967 -29.793 186.984 1 102.78 ? C9 EBX 1201 A 1 HETATM 23 N N1 EBX . . . B 2 46.257 -28.078 188.103 1 102.98 ? N1 EBX 1201 A 1 HETATM 24 N N2 EBX . . . B 2 45.619 -30.105 190.596 1 103.09 ? N2 EBX 1201 A 1 HETATM 25 N N3 EBX . . . B 2 49.66 -30.118 186.929 1 104.03 ? N3 EBX 1201 A 1 HETATM 26 N N4 EBX . . . B 2 52.244 -31.827 186.28 1 95.43 ? N4 EBX 1201 A 1 HETATM 27 O O1 EBX . . . B 2 47.831 -31.206 188.424 1 105.29 ? O1 EBX 1201 A 1 HETATM 28 O O2 EBX . . . B 2 44.497 -30.476 188.654 1 101.94 ? O2 EBX 1201 A 1 HETATM 29 O O3 EBX . . . B 2 51.62 -27.521 187.619 1 102.69 ? O3 EBX 1201 A 1 HETATM 30 O O4 EBX . . . B 2 54.119 -29.248 186.888 1 104.68 ? O4 EBX 1201 A 1 HETATM 31 O O5 EBX . . . B 2 55.066 -34.066 187.457 1 91.06 ? O5 EBX 1201 A 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #