data_6LFR # _model_server_result.job_id 2BHNaE-0LKv2cJNGp4w7UA _model_server_result.datetime_utc '2024-10-15 13:15:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6lfr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 6LFR # _exptl.entry_id 6LFR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 559.316 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ADENOSINE-5-DIPHOSPHORIBOSE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6LFR _cell.length_a 85.619 _cell.length_b 85.619 _cell.length_c 37.945 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6LFR _symmetry.cell_setting ? _symmetry.Int_Tables_number 172 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H23 N5 O14 P2' _chem_comp.formula_weight 559.316 _chem_comp.id APR _chem_comp.mon_nstd_flag . _chem_comp.name ADENOSINE-5-DIPHOSPHORIBOSE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 APR sing 13 n y N1 C6 APR doub 14 n y C2 N3 APR doub 15 n y C2 H2 APR sing 16 n n N3 C4 APR sing 17 n y C4 C5 APR doub 18 n y C4 N9 APR sing 19 n y C5 C6 APR sing 20 n y C5 N7 APR sing 21 n y C6 N6 APR sing 22 n n N6 H61 APR sing 23 n n N6 H62 APR sing 24 n n N7 C8 APR doub 25 n y C8 N9 APR sing 26 n y C8 H8 APR sing 27 n n N9 C1' APR sing 28 n n C1' C2' APR sing 29 n n C1' O4' APR sing 30 n n C1' "H'1" APR sing 31 n n C2' O2' APR sing 32 n n C2' C3' APR sing 33 n n C2' "H'2" APR sing 34 n n O2' "HO'2" APR sing 35 n n C3' O3' APR sing 36 n n C3' C4' APR sing 37 n n C3' "H'3" APR sing 38 n n O3' "HO'3" APR sing 39 n n O4' C4' APR sing 40 n n C4' C5' APR sing 41 n n C4' "H'4" APR sing 42 n n C5' O5' APR sing 43 n n C5' "H5'1" APR sing 44 n n C5' "H5'2" APR sing 45 n n O5' PA APR sing 46 n n PA O1A APR doub 47 n n PA O2A APR sing 48 n n PA O3A APR sing 49 n n O2A HOA2 APR sing 50 n n O3A PB APR sing 51 n n PB O1B APR doub 52 n n PB O2B APR sing 53 n n PB O5D APR sing 54 n n O2B HOB2 APR sing 55 n n O5D C5D APR sing 56 n n C5D C4D APR sing 57 n n C5D H5R1 APR sing 58 n n C5D H5R2 APR sing 59 n n O4D C1D APR sing 60 n n O4D C4D APR sing 61 n n O1D C1D APR sing 62 n n O1D HOR1 APR sing 63 n n C1D C2D APR sing 64 n n C1D "HR'1" APR sing 65 n n O2D C2D APR sing 66 n n O2D HOR2 APR sing 67 n n C2D C3D APR sing 68 n n C2D "HR'2" APR sing 69 n n O3D C3D APR sing 70 n n O3D HOR3 APR sing 71 n n C3D C4D APR sing 72 n n C3D "HR'3" APR sing 73 n n C4D "HR'4" APR sing 74 n n # _atom_sites.entry_id 6LFR _atom_sites.fract_transf_matrix[1][1] 0.01168 _atom_sites.fract_transf_matrix[1][2] 0.006743 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013486 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026354 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 APR A 1 201 1 APR APR . C 3 HOH A 1 301 24 HOH HOH . C 3 HOH A 2 302 105 HOH HOH . C 3 HOH A 3 303 173 HOH HOH . C 3 HOH A 4 304 89 HOH HOH . C 3 HOH A 5 305 103 HOH HOH . C 3 HOH A 6 306 51 HOH HOH . C 3 HOH A 7 307 64 HOH HOH . C 3 HOH A 8 308 95 HOH HOH . C 3 HOH A 9 309 25 HOH HOH . C 3 HOH A 10 310 91 HOH HOH . C 3 HOH A 11 311 45 HOH HOH . C 3 HOH A 12 312 150 HOH HOH . C 3 HOH A 13 313 116 HOH HOH . C 3 HOH A 14 314 152 HOH HOH . C 3 HOH A 15 315 151 HOH HOH . C 3 HOH A 16 316 153 HOH HOH . C 3 HOH A 17 317 57 HOH HOH . C 3 HOH A 18 318 175 HOH HOH . C 3 HOH A 19 319 86 HOH HOH . C 3 HOH A 20 320 164 HOH HOH . C 3 HOH A 21 321 68 HOH HOH . C 3 HOH A 22 322 169 HOH HOH . C 3 HOH A 23 323 177 HOH HOH . C 3 HOH A 24 324 155 HOH HOH . C 3 HOH A 25 325 2 HOH HOH . C 3 HOH A 26 326 17 HOH HOH . C 3 HOH A 27 327 163 HOH HOH . C 3 HOH A 28 328 137 HOH HOH . C 3 HOH A 29 329 160 HOH HOH . C 3 HOH A 30 330 88 HOH HOH . C 3 HOH A 31 331 61 HOH HOH . C 3 HOH A 32 332 132 HOH HOH . C 3 HOH A 33 333 62 HOH HOH . C 3 HOH A 34 334 107 HOH HOH . C 3 HOH A 35 335 167 HOH HOH . C 3 HOH A 36 336 108 HOH HOH . C 3 HOH A 37 337 18 HOH HOH . C 3 HOH A 38 338 63 HOH HOH . C 3 HOH A 39 339 10 HOH HOH . C 3 HOH A 40 340 43 HOH HOH . C 3 HOH A 41 341 98 HOH HOH . C 3 HOH A 42 342 5 HOH HOH . C 3 HOH A 43 343 53 HOH HOH . C 3 HOH A 44 344 77 HOH HOH . C 3 HOH A 45 345 102 HOH HOH . C 3 HOH A 46 346 118 HOH HOH . C 3 HOH A 47 347 6 HOH HOH . C 3 HOH A 48 348 101 HOH HOH . C 3 HOH A 49 349 9 HOH HOH . C 3 HOH A 50 350 123 HOH HOH . C 3 HOH A 51 351 83 HOH HOH . C 3 HOH A 52 352 22 HOH HOH . C 3 HOH A 53 353 27 HOH HOH . C 3 HOH A 54 354 74 HOH HOH . C 3 HOH A 55 355 114 HOH HOH . C 3 HOH A 56 356 54 HOH HOH . C 3 HOH A 57 357 41 HOH HOH . C 3 HOH A 58 358 124 HOH HOH . C 3 HOH A 59 359 46 HOH HOH . C 3 HOH A 60 360 67 HOH HOH . C 3 HOH A 61 361 4 HOH HOH . C 3 HOH A 62 362 28 HOH HOH . C 3 HOH A 63 363 92 HOH HOH . C 3 HOH A 64 364 115 HOH HOH . C 3 HOH A 65 365 1 HOH HOH . C 3 HOH A 66 366 65 HOH HOH . C 3 HOH A 67 367 38 HOH HOH . C 3 HOH A 68 368 134 HOH HOH . C 3 HOH A 69 369 23 HOH HOH . C 3 HOH A 70 370 154 HOH HOH . C 3 HOH A 71 371 71 HOH HOH . C 3 HOH A 72 372 42 HOH HOH . C 3 HOH A 73 373 127 HOH HOH . C 3 HOH A 74 374 143 HOH HOH . C 3 HOH A 75 375 66 HOH HOH . C 3 HOH A 76 376 7 HOH HOH . C 3 HOH A 77 377 131 HOH HOH . C 3 HOH A 78 378 3 HOH HOH . C 3 HOH A 79 379 21 HOH HOH . C 3 HOH A 80 380 40 HOH HOH . C 3 HOH A 81 381 29 HOH HOH . C 3 HOH A 82 382 12 HOH HOH . C 3 HOH A 83 383 100 HOH HOH . C 3 HOH A 84 384 37 HOH HOH . C 3 HOH A 85 385 44 HOH HOH . C 3 HOH A 86 386 112 HOH HOH . C 3 HOH A 87 387 130 HOH HOH . C 3 HOH A 88 388 13 HOH HOH . C 3 HOH A 89 389 36 HOH HOH . C 3 HOH A 90 390 8 HOH HOH . C 3 HOH A 91 391 129 HOH HOH . C 3 HOH A 92 392 20 HOH HOH . C 3 HOH A 93 393 168 HOH HOH . C 3 HOH A 94 394 159 HOH HOH . C 3 HOH A 95 395 113 HOH HOH . C 3 HOH A 96 396 15 HOH HOH . C 3 HOH A 97 397 85 HOH HOH . C 3 HOH A 98 398 59 HOH HOH . C 3 HOH A 99 399 26 HOH HOH . C 3 HOH A 100 400 32 HOH HOH . C 3 HOH A 101 401 48 HOH HOH . C 3 HOH A 102 402 156 HOH HOH . C 3 HOH A 103 403 11 HOH HOH . C 3 HOH A 104 404 140 HOH HOH . C 3 HOH A 105 405 49 HOH HOH . C 3 HOH A 106 406 126 HOH HOH . C 3 HOH A 107 407 125 HOH HOH . C 3 HOH A 108 408 34 HOH HOH . C 3 HOH A 109 409 31 HOH HOH . C 3 HOH A 110 410 14 HOH HOH . C 3 HOH A 111 411 93 HOH HOH . C 3 HOH A 112 412 104 HOH HOH . C 3 HOH A 113 413 135 HOH HOH . C 3 HOH A 114 414 128 HOH HOH . C 3 HOH A 115 415 30 HOH HOH . C 3 HOH A 116 416 136 HOH HOH . C 3 HOH A 117 417 72 HOH HOH . C 3 HOH A 118 418 147 HOH HOH . C 3 HOH A 119 419 35 HOH HOH . C 3 HOH A 120 420 79 HOH HOH . C 3 HOH A 121 421 73 HOH HOH . C 3 HOH A 122 422 87 HOH HOH . C 3 HOH A 123 423 19 HOH HOH . C 3 HOH A 124 424 16 HOH HOH . C 3 HOH A 125 425 162 HOH HOH . C 3 HOH A 126 426 106 HOH HOH . C 3 HOH A 127 427 60 HOH HOH . C 3 HOH A 128 428 39 HOH HOH . C 3 HOH A 129 429 165 HOH HOH . C 3 HOH A 130 430 133 HOH HOH . C 3 HOH A 131 431 120 HOH HOH . C 3 HOH A 132 432 56 HOH HOH . C 3 HOH A 133 433 52 HOH HOH . C 3 HOH A 134 434 84 HOH HOH . C 3 HOH A 135 435 174 HOH HOH . C 3 HOH A 136 436 142 HOH HOH . C 3 HOH A 137 437 99 HOH HOH . C 3 HOH A 138 438 145 HOH HOH . C 3 HOH A 139 439 149 HOH HOH . C 3 HOH A 140 440 148 HOH HOH . C 3 HOH A 141 441 139 HOH HOH . C 3 HOH A 142 442 172 HOH HOH . C 3 HOH A 143 443 138 HOH HOH . C 3 HOH A 144 444 80 HOH HOH . C 3 HOH A 145 445 110 HOH HOH . C 3 HOH A 146 446 82 HOH HOH . C 3 HOH A 147 447 121 HOH HOH . C 3 HOH A 148 448 171 HOH HOH . C 3 HOH A 149 449 122 HOH HOH . C 3 HOH A 150 450 109 HOH HOH . C 3 HOH A 151 451 75 HOH HOH . C 3 HOH A 152 452 157 HOH HOH . C 3 HOH A 153 453 70 HOH HOH . C 3 HOH A 154 454 97 HOH HOH . C 3 HOH A 155 455 33 HOH HOH . C 3 HOH A 156 456 94 HOH HOH . C 3 HOH A 157 457 176 HOH HOH . C 3 HOH A 158 458 111 HOH HOH . C 3 HOH A 159 459 170 HOH HOH . C 3 HOH A 160 460 78 HOH HOH . C 3 HOH A 161 461 58 HOH HOH . C 3 HOH A 162 462 158 HOH HOH . C 3 HOH A 163 463 119 HOH HOH . C 3 HOH A 164 464 144 HOH HOH . C 3 HOH A 165 465 50 HOH HOH . C 3 HOH A 166 466 90 HOH HOH . C 3 HOH A 167 467 96 HOH HOH . C 3 HOH A 168 468 69 HOH HOH . C 3 HOH A 169 469 47 HOH HOH . C 3 HOH A 170 470 76 HOH HOH . C 3 HOH A 171 471 117 HOH HOH . C 3 HOH A 172 472 81 HOH HOH . C 3 HOH A 173 473 146 HOH HOH . C 3 HOH A 174 474 55 HOH HOH . C 3 HOH A 175 475 166 HOH HOH . C 3 HOH A 176 476 141 HOH HOH . C 3 HOH A 177 477 161 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 APR . . . B 2 28.517 25.735 -7.988 1 18.35 ? N1 APR 201 A 1 HETATM 2 C C2 APR . . . B 2 27.944 24.694 -8.662 1 18.4 ? C2 APR 201 A 1 HETATM 3 N N3 APR . . . B 2 28.639 23.537 -8.869 1 18.49 ? N3 APR 201 A 1 HETATM 4 C C4 APR . . . B 2 29.9 23.444 -8.397 1 19.75 ? C4 APR 201 A 1 HETATM 5 C C5 APR . . . B 2 30.462 24.463 -7.736 1 19.63 ? C5 APR 201 A 1 HETATM 6 C C6 APR . . . B 2 29.765 25.626 -7.528 1 16.44 ? C6 APR 201 A 1 HETATM 7 N N6 APR . . . B 2 29.669 26.979 -6.986 1 17.11 ? N6 APR 201 A 1 HETATM 8 N N7 APR . . . B 2 31.708 24.121 -7.376 1 19.98 ? N7 APR 201 A 1 HETATM 9 C C8 APR . . . B 2 31.931 22.876 -7.813 1 19.01 ? C8 APR 201 A 1 HETATM 10 N N9 APR . . . B 2 30.824 22.478 -8.438 1 19.85 ? N9 APR 201 A 1 HETATM 11 C C1' APR . . . B 2 30.645 21.175 -9.031 1 22.32 ? C1' APR 201 A 1 HETATM 12 C C2' APR . . . B 2 32.05 20.464 -9.383 1 29.13 ? C2' APR 201 A 1 HETATM 13 O O2' APR . . . B 2 32.553 20.955 -10.66 1 36.36 ? O2' APR 201 A 1 HETATM 14 C C3' APR . . . B 2 31.725 19.208 -9.495 1 30.96 ? C3' APR 201 A 1 HETATM 15 O O3' APR . . . B 2 31.101 19.031 -10.846 1 36.6 ? O3' APR 201 A 1 HETATM 16 O O4' APR . . . B 2 30.162 20.401 -8.111 1 24.98 ? O4' APR 201 A 1 HETATM 17 C C4' APR . . . B 2 30.635 18.966 -8.436 1 24.91 ? C4' APR 201 A 1 HETATM 18 C C5' APR . . . B 2 31.121 18.281 -7.277 1 23.67 ? C5' APR 201 A 1 HETATM 19 O O5' APR . . . B 2 32.074 19.096 -6.592 1 20.62 ? O5' APR 201 A 1 HETATM 20 P PA APR . . . B 2 33.223 18.445 -5.559 1 17.07 ? PA APR 201 A 1 HETATM 21 O O1A APR . . . B 2 34.333 17.797 -6.352 1 25.35 ? O1A APR 201 A 1 HETATM 22 O O2A APR . . . B 2 33.743 19.534 -4.682 1 17.03 -1 O2A APR 201 A 1 HETATM 23 O O3A APR . . . B 2 32.429 17.383 -4.631 1 17.52 ? O3A APR 201 A 1 HETATM 24 P PB APR . . . B 2 32.483 15.761 -4.591 1 16.04 ? PB APR 201 A 1 HETATM 25 O O1B APR . . . B 2 31.175 15.265 -4.04 1 15.7 ? O1B APR 201 A 1 HETATM 26 O O2B APR . . . B 2 32.78 15.167 -5.951 1 20.34 -1 O2B APR 201 A 1 HETATM 27 O O5D APR . . . B 2 33.697 15.353 -3.557 1 18.56 ? O5D APR 201 A 1 HETATM 28 C C5D APR . . . B 2 33.568 15.807 -2.227 1 18.14 ? C5D APR 201 A 1 HETATM 29 O O4D APR . . . B 2 35.487 17.07 -2.254 1 16.84 ? O4D APR 201 A 1 HETATM 30 O O1D APR . . . B 2 34.111 18.938 -1.861 1 17.91 ? O1D APR 201 A 1 HETATM 31 C C1D APR . . . B 2 35.099 18.254 -1.356 1 19.41 ? C1D APR 201 A 1 HETATM 32 O O2D APR . . . B 2 35.637 18.141 1.067 1 17.6 ? O2D APR 201 A 1 HETATM 33 C C2D APR . . . B 2 34.745 17.59 0.016 1 17.06 ? C2D APR 201 A 1 HETATM 34 O O3D APR . . . B 2 36.135 15.747 0.462 1 18.86 ? O3D APR 201 A 1 HETATM 35 C C3D APR . . . B 2 34.897 16.279 -0.115 1 16.57 ? C3D APR 201 A 1 HETATM 36 C C4D APR . . . B 2 34.962 16.004 -1.701 1 15.74 ? C4D APR 201 A 1 # _model_server_stats.io_time_ms 45 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 36 #