data_6LGV # _model_server_result.job_id qkwFsN0cXFz-F2zbn1uWFA _model_server_result.datetime_utc '2024-11-08 16:05:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6lgv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 6LGV # _exptl.entry_id 6LGV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6LGV _cell.length_a 71.798 _cell.length_b 91.779 _cell.length_c 44.855 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6LGV _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 15 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 10 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 296 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 291 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.043 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id A6L _chem_comp.mon_nstd_flag . _chem_comp.name '2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms monoolein # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OXT C A6L doub 1 n n CA C A6L sing 2 n n CA C3 A6L sing 3 n n C O A6L sing 4 n n C4 C3 A6L sing 5 n n C4 C5 A6L sing 6 n n C6 C5 A6L sing 7 n n C6 C7 A6L sing 8 n n C17 C18 A6L sing 9 n n C17 C16 A6L sing 10 n n C16 C15 A6L sing 11 n n C8 C7 A6L sing 12 n n C8 C9 A6L sing 13 n n C14 C15 A6L sing 14 n n C14 C13 A6L sing 15 n n C9 C10 A6L doub 16 z n C12 C13 A6L sing 17 n n C12 C11 A6L sing 18 n n C10 C11 A6L sing 19 n n CA H1 A6L sing 20 n n CA H2 A6L sing 21 n n C3 H4 A6L sing 22 n n C3 H5 A6L sing 23 n n C4 H6 A6L sing 24 n n C4 H7 A6L sing 25 n n C5 H8 A6L sing 26 n n C5 H9 A6L sing 27 n n C6 H10 A6L sing 28 n n C6 H11 A6L sing 29 n n C7 H12 A6L sing 30 n n C7 H13 A6L sing 31 n n C8 H14 A6L sing 32 n n C8 H15 A6L sing 33 n n C9 H16 A6L sing 34 n n C10 H17 A6L sing 35 n n C11 H18 A6L sing 36 n n C11 H19 A6L sing 37 n n C12 H20 A6L sing 38 n n C12 H21 A6L sing 39 n n C13 H22 A6L sing 40 n n C13 H23 A6L sing 41 n n C14 H24 A6L sing 42 n n C14 H25 A6L sing 43 n n C15 H26 A6L sing 44 n n C15 H27 A6L sing 45 n n C16 H28 A6L sing 46 n n C16 H29 A6L sing 47 n n C17 H30 A6L sing 48 n n C17 H31 A6L sing 49 n n C18 H32 A6L sing 50 n n C18 H33 A6L sing 51 n n C18 H34 A6L sing 52 n n O C1 A6L sing 53 n n C1 C2 A6L sing 54 n n C2 C19 A6L sing 55 n n C19 O2 A6L sing 56 n n C2 O1 A6L sing 57 n n C1 H3 A6L sing 58 n n C1 H35 A6L sing 59 n n C2 H36 A6L sing 60 n n C19 H37 A6L sing 61 n n C19 H38 A6L sing 62 n n O2 H39 A6L sing 63 n n O1 H40 A6L sing 64 n n # _atom_sites.entry_id 6LGV _atom_sites.fract_transf_matrix[1][1] 0.013928 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010896 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022294 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CIT A 1 401 401 CIT CIT . C 3 A6L A 1 402 501 A6L 9MO . D 3 A6L A 1 403 502 A6L 9MO . E 3 A6L A 1 404 503 A6L 9MO . F 3 A6L A 1 405 504 A6L 9MO . G 3 A6L A 1 406 505 A6L 9MO . H 4 HOH A 1 501 126 HOH HOH . H 4 HOH A 2 502 96 HOH HOH . H 4 HOH A 3 503 77 HOH HOH . H 4 HOH A 4 504 67 HOH HOH . H 4 HOH A 5 505 49 HOH HOH . H 4 HOH A 6 506 93 HOH HOH . H 4 HOH A 7 507 76 HOH HOH . H 4 HOH A 8 508 17 HOH HOH . H 4 HOH A 9 509 102 HOH HOH . H 4 HOH A 10 510 36 HOH HOH . H 4 HOH A 11 511 112 HOH HOH . H 4 HOH A 12 512 54 HOH HOH . H 4 HOH A 13 513 62 HOH HOH . H 4 HOH A 14 514 53 HOH HOH . H 4 HOH A 15 515 110 HOH HOH . H 4 HOH A 16 516 135 HOH HOH . H 4 HOH A 17 517 40 HOH HOH . H 4 HOH A 18 518 134 HOH HOH . H 4 HOH A 19 519 99 HOH HOH . H 4 HOH A 20 520 80 HOH HOH . H 4 HOH A 21 521 75 HOH HOH . H 4 HOH A 22 522 24 HOH HOH . H 4 HOH A 23 523 61 HOH HOH . H 4 HOH A 24 524 23 HOH HOH . H 4 HOH A 25 525 11 HOH HOH . H 4 HOH A 26 526 30 HOH HOH . H 4 HOH A 27 527 37 HOH HOH . H 4 HOH A 28 528 55 HOH HOH . H 4 HOH A 29 529 13 HOH HOH . H 4 HOH A 30 530 118 HOH HOH . H 4 HOH A 31 531 31 HOH HOH . H 4 HOH A 32 532 114 HOH HOH . H 4 HOH A 33 533 33 HOH HOH . H 4 HOH A 34 534 48 HOH HOH . H 4 HOH A 35 535 18 HOH HOH . H 4 HOH A 36 536 70 HOH HOH . H 4 HOH A 37 537 22 HOH HOH . H 4 HOH A 38 538 82 HOH HOH . H 4 HOH A 39 539 86 HOH HOH . H 4 HOH A 40 540 29 HOH HOH . H 4 HOH A 41 541 14 HOH HOH . H 4 HOH A 42 542 60 HOH HOH . H 4 HOH A 43 543 64 HOH HOH . H 4 HOH A 44 544 116 HOH HOH . H 4 HOH A 45 545 69 HOH HOH . H 4 HOH A 46 546 66 HOH HOH . H 4 HOH A 47 547 91 HOH HOH . H 4 HOH A 48 548 19 HOH HOH . H 4 HOH A 49 549 4 HOH HOH . H 4 HOH A 50 550 73 HOH HOH . H 4 HOH A 51 551 63 HOH HOH . H 4 HOH A 52 552 38 HOH HOH . H 4 HOH A 53 553 39 HOH HOH . H 4 HOH A 54 554 94 HOH HOH . H 4 HOH A 55 555 109 HOH HOH . H 4 HOH A 56 556 83 HOH HOH . H 4 HOH A 57 557 27 HOH HOH . H 4 HOH A 58 558 6 HOH HOH . H 4 HOH A 59 559 7 HOH HOH . H 4 HOH A 60 560 15 HOH HOH . H 4 HOH A 61 561 79 HOH HOH . H 4 HOH A 62 562 8 HOH HOH . H 4 HOH A 63 563 43 HOH HOH . H 4 HOH A 64 564 10 HOH HOH . H 4 HOH A 65 565 41 HOH HOH . H 4 HOH A 66 566 35 HOH HOH . H 4 HOH A 67 567 26 HOH HOH . H 4 HOH A 68 568 108 HOH HOH . H 4 HOH A 69 569 20 HOH HOH . H 4 HOH A 70 570 3 HOH HOH . H 4 HOH A 71 571 89 HOH HOH . H 4 HOH A 72 572 125 HOH HOH . H 4 HOH A 73 573 50 HOH HOH . H 4 HOH A 74 574 47 HOH HOH . H 4 HOH A 75 575 12 HOH HOH . H 4 HOH A 76 576 128 HOH HOH . H 4 HOH A 77 577 5 HOH HOH . H 4 HOH A 78 578 104 HOH HOH . H 4 HOH A 79 579 87 HOH HOH . H 4 HOH A 80 580 44 HOH HOH . H 4 HOH A 81 581 88 HOH HOH . H 4 HOH A 82 582 58 HOH HOH . H 4 HOH A 83 583 21 HOH HOH . H 4 HOH A 84 584 42 HOH HOH . H 4 HOH A 85 585 57 HOH HOH . H 4 HOH A 86 586 130 HOH HOH . H 4 HOH A 87 587 98 HOH HOH . H 4 HOH A 88 588 9 HOH HOH . H 4 HOH A 89 589 34 HOH HOH . H 4 HOH A 90 590 1 HOH HOH . H 4 HOH A 91 591 46 HOH HOH . H 4 HOH A 92 592 120 HOH HOH . H 4 HOH A 93 593 133 HOH HOH . H 4 HOH A 94 594 56 HOH HOH . H 4 HOH A 95 595 111 HOH HOH . H 4 HOH A 96 596 127 HOH HOH . H 4 HOH A 97 597 16 HOH HOH . H 4 HOH A 98 598 84 HOH HOH . H 4 HOH A 99 599 101 HOH HOH . H 4 HOH A 100 600 107 HOH HOH . H 4 HOH A 101 601 100 HOH HOH . H 4 HOH A 102 602 92 HOH HOH . H 4 HOH A 103 603 124 HOH HOH . H 4 HOH A 104 604 2 HOH HOH . H 4 HOH A 105 605 28 HOH HOH . H 4 HOH A 106 606 52 HOH HOH . H 4 HOH A 107 607 32 HOH HOH . H 4 HOH A 108 608 59 HOH HOH . H 4 HOH A 109 609 90 HOH HOH . H 4 HOH A 110 610 119 HOH HOH . H 4 HOH A 111 611 65 HOH HOH . H 4 HOH A 112 612 129 HOH HOH . H 4 HOH A 113 613 122 HOH HOH . H 4 HOH A 114 614 72 HOH HOH . H 4 HOH A 115 615 51 HOH HOH . H 4 HOH A 116 616 25 HOH HOH . H 4 HOH A 117 617 74 HOH HOH . H 4 HOH A 118 618 85 HOH HOH . H 4 HOH A 119 619 71 HOH HOH . H 4 HOH A 120 620 68 HOH HOH . H 4 HOH A 121 621 115 HOH HOH . H 4 HOH A 122 622 132 HOH HOH . H 4 HOH A 123 623 105 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CA A6L . . . C 3 29.653 12.677 28.475 1 26.29 ? CA A6L 402 A 1 HETATM 2 C C A6L . . . C 3 29.964 11.582 29.482 1 38.97 ? C A6L 402 A 1 HETATM 3 O O A6L . . . C 3 29.414 10.323 29.256 1 35.29 ? O A6L 402 A 1 HETATM 4 C C3 A6L . . . C 3 30.848 13.569 28.136 1 33.75 ? C3 A6L 402 A 1 HETATM 5 C C4 A6L . . . C 3 30.309 14.669 27.251 1 28.13 ? C4 A6L 402 A 1 HETATM 6 C C5 A6L . . . C 3 31.373 15.215 26.324 1 26.68 ? C5 A6L 402 A 1 HETATM 7 C C6 A6L . . . C 3 31.343 16.738 26.177 1 26.6 ? C6 A6L 402 A 1 HETATM 8 C C7 A6L . . . C 3 29.987 17.363 26.418 1 35.81 ? C7 A6L 402 A 1 HETATM 9 C C8 A6L . . . C 3 29.511 18.103 25.174 1 36.99 ? C8 A6L 402 A 1 HETATM 10 C C9 A6L . . . C 3 29.77 19.554 25.418 1 36.78 ? C9 A6L 402 A 1 HETATM 11 C C10 A6L . . . C 3 28.904 20.298 26.08 1 35.62 ? C10 A6L 402 A 1 HETATM 12 C C11 A6L . . . C 3 29.427 21.723 26.21 1 35.24 ? C11 A6L 402 A 1 HETATM 13 C C12 A6L . . . C 3 30.402 21.88 27.378 1 39.78 ? C12 A6L 402 A 1 HETATM 14 C C13 A6L . . . C 3 30.587 23.325 27.862 1 40.8 ? C13 A6L 402 A 1 HETATM 15 C C14 A6L . . . C 3 32.031 23.707 28.238 1 45.38 ? C14 A6L 402 A 1 HETATM 16 C C15 A6L . . . C 3 32.47 25.133 27.851 1 49.68 ? C15 A6L 402 A 1 HETATM 17 C C16 A6L . . . C 3 33.963 25.28 27.516 1 45.24 ? C16 A6L 402 A 1 HETATM 18 C C17 A6L . . . C 3 34.272 26.61 26.829 1 46.22 ? C17 A6L 402 A 1 HETATM 19 C C18 A6L . . . C 3 35.199 26.456 25.627 1 46.26 ? C18 A6L 402 A 1 HETATM 20 O OXT A6L . . . C 3 30.62 11.781 30.459 1 44.39 ? OXT A6L 402 A 1 HETATM 21 C C1 A6L . . . C 3 29.119 9.673 30.469 1 35.55 ? C1 A6L 402 A 1 HETATM 22 C C2 A6L . . . C 3 27.974 8.685 30.208 1 23.87 ? C2 A6L 402 A 1 HETATM 23 C C19 A6L . . . C 3 27.617 7.926 31.479 1 28.84 ? C19 A6L 402 A 1 HETATM 24 O O2 A6L . . . C 3 28.515 6.843 31.388 1 38.52 ? O2 A6L 402 A 1 HETATM 25 O O1 A6L . . . C 3 26.88 9.358 29.74 1 27.09 ? O1 A6L 402 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 25 #