data_6LGV
#
_model_server_result.job_id            SreivH9W6tNgkCiVXbopiQ 
_model_server_result.datetime_utc      '2024-11-08 16:13:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6lgv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":403}' 
#
_entry.id    6LGV 
#
_exptl.entry_id    6LGV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              356.54 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6LGV 
_cell.length_a            71.798 
_cell.length_b            91.779 
_cell.length_c            44.855 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6LGV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 G N N 
#
_struct_conn.conn_type_id                   disulf 
_struct_conn.details                        ? 
_struct_conn.id                             disulf1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             15 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              10 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            A 
_struct_conn.ptnr2_label_atom_id            SG 
_struct_conn.ptnr2_label_comp_id            CYS 
_struct_conn.ptnr2_label_seq_id             296 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             CYS 
_struct_conn.ptnr2_auth_seq_id              291 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.043 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C21 H40 O4' 
_chem_comp.formula_weight    356.54 
_chem_comp.id                A6L 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     monoolein 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
OXT C A6L doub 1 n n 
CA C A6L sing 2 n n 
CA C3 A6L sing 3 n n 
C O A6L sing 4 n n 
C4 C3 A6L sing 5 n n 
C4 C5 A6L sing 6 n n 
C6 C5 A6L sing 7 n n 
C6 C7 A6L sing 8 n n 
C17 C18 A6L sing 9 n n 
C17 C16 A6L sing 10 n n 
C16 C15 A6L sing 11 n n 
C8 C7 A6L sing 12 n n 
C8 C9 A6L sing 13 n n 
C14 C15 A6L sing 14 n n 
C14 C13 A6L sing 15 n n 
C9 C10 A6L doub 16 z n 
C12 C13 A6L sing 17 n n 
C12 C11 A6L sing 18 n n 
C10 C11 A6L sing 19 n n 
CA H1 A6L sing 20 n n 
CA H2 A6L sing 21 n n 
C3 H4 A6L sing 22 n n 
C3 H5 A6L sing 23 n n 
C4 H6 A6L sing 24 n n 
C4 H7 A6L sing 25 n n 
C5 H8 A6L sing 26 n n 
C5 H9 A6L sing 27 n n 
C6 H10 A6L sing 28 n n 
C6 H11 A6L sing 29 n n 
C7 H12 A6L sing 30 n n 
C7 H13 A6L sing 31 n n 
C8 H14 A6L sing 32 n n 
C8 H15 A6L sing 33 n n 
C9 H16 A6L sing 34 n n 
C10 H17 A6L sing 35 n n 
C11 H18 A6L sing 36 n n 
C11 H19 A6L sing 37 n n 
C12 H20 A6L sing 38 n n 
C12 H21 A6L sing 39 n n 
C13 H22 A6L sing 40 n n 
C13 H23 A6L sing 41 n n 
C14 H24 A6L sing 42 n n 
C14 H25 A6L sing 43 n n 
C15 H26 A6L sing 44 n n 
C15 H27 A6L sing 45 n n 
C16 H28 A6L sing 46 n n 
C16 H29 A6L sing 47 n n 
C17 H30 A6L sing 48 n n 
C17 H31 A6L sing 49 n n 
C18 H32 A6L sing 50 n n 
C18 H33 A6L sing 51 n n 
C18 H34 A6L sing 52 n n 
O C1 A6L sing 53 n n 
C1 C2 A6L sing 54 n n 
C2 C19 A6L sing 55 n n 
C19 O2 A6L sing 56 n n 
C2 O1 A6L sing 57 n n 
C1 H3 A6L sing 58 n n 
C1 H35 A6L sing 59 n n 
C2 H36 A6L sing 60 n n 
C19 H37 A6L sing 61 n n 
C19 H38 A6L sing 62 n n 
O2 H39 A6L sing 63 n n 
O1 H40 A6L sing 64 n n 
#
_atom_sites.entry_id                     6LGV 
_atom_sites.fract_transf_matrix[1][1]    0.013928 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010896 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.022294 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CIT A 1 401 401 CIT CIT . 
C 3 A6L A 1 402 501 A6L 9MO . 
D 3 A6L A 1 403 502 A6L 9MO . 
E 3 A6L A 1 404 503 A6L 9MO . 
F 3 A6L A 1 405 504 A6L 9MO . 
G 3 A6L A 1 406 505 A6L 9MO . 
H 4 HOH A 1 501 126 HOH HOH . 
H 4 HOH A 2 502 96 HOH HOH . 
H 4 HOH A 3 503 77 HOH HOH . 
H 4 HOH A 4 504 67 HOH HOH . 
H 4 HOH A 5 505 49 HOH HOH . 
H 4 HOH A 6 506 93 HOH HOH . 
H 4 HOH A 7 507 76 HOH HOH . 
H 4 HOH A 8 508 17 HOH HOH . 
H 4 HOH A 9 509 102 HOH HOH . 
H 4 HOH A 10 510 36 HOH HOH . 
H 4 HOH A 11 511 112 HOH HOH . 
H 4 HOH A 12 512 54 HOH HOH . 
H 4 HOH A 13 513 62 HOH HOH . 
H 4 HOH A 14 514 53 HOH HOH . 
H 4 HOH A 15 515 110 HOH HOH . 
H 4 HOH A 16 516 135 HOH HOH . 
H 4 HOH A 17 517 40 HOH HOH . 
H 4 HOH A 18 518 134 HOH HOH . 
H 4 HOH A 19 519 99 HOH HOH . 
H 4 HOH A 20 520 80 HOH HOH . 
H 4 HOH A 21 521 75 HOH HOH . 
H 4 HOH A 22 522 24 HOH HOH . 
H 4 HOH A 23 523 61 HOH HOH . 
H 4 HOH A 24 524 23 HOH HOH . 
H 4 HOH A 25 525 11 HOH HOH . 
H 4 HOH A 26 526 30 HOH HOH . 
H 4 HOH A 27 527 37 HOH HOH . 
H 4 HOH A 28 528 55 HOH HOH . 
H 4 HOH A 29 529 13 HOH HOH . 
H 4 HOH A 30 530 118 HOH HOH . 
H 4 HOH A 31 531 31 HOH HOH . 
H 4 HOH A 32 532 114 HOH HOH . 
H 4 HOH A 33 533 33 HOH HOH . 
H 4 HOH A 34 534 48 HOH HOH . 
H 4 HOH A 35 535 18 HOH HOH . 
H 4 HOH A 36 536 70 HOH HOH . 
H 4 HOH A 37 537 22 HOH HOH . 
H 4 HOH A 38 538 82 HOH HOH . 
H 4 HOH A 39 539 86 HOH HOH . 
H 4 HOH A 40 540 29 HOH HOH . 
H 4 HOH A 41 541 14 HOH HOH . 
H 4 HOH A 42 542 60 HOH HOH . 
H 4 HOH A 43 543 64 HOH HOH . 
H 4 HOH A 44 544 116 HOH HOH . 
H 4 HOH A 45 545 69 HOH HOH . 
H 4 HOH A 46 546 66 HOH HOH . 
H 4 HOH A 47 547 91 HOH HOH . 
H 4 HOH A 48 548 19 HOH HOH . 
H 4 HOH A 49 549 4 HOH HOH . 
H 4 HOH A 50 550 73 HOH HOH . 
H 4 HOH A 51 551 63 HOH HOH . 
H 4 HOH A 52 552 38 HOH HOH . 
H 4 HOH A 53 553 39 HOH HOH . 
H 4 HOH A 54 554 94 HOH HOH . 
H 4 HOH A 55 555 109 HOH HOH . 
H 4 HOH A 56 556 83 HOH HOH . 
H 4 HOH A 57 557 27 HOH HOH . 
H 4 HOH A 58 558 6 HOH HOH . 
H 4 HOH A 59 559 7 HOH HOH . 
H 4 HOH A 60 560 15 HOH HOH . 
H 4 HOH A 61 561 79 HOH HOH . 
H 4 HOH A 62 562 8 HOH HOH . 
H 4 HOH A 63 563 43 HOH HOH . 
H 4 HOH A 64 564 10 HOH HOH . 
H 4 HOH A 65 565 41 HOH HOH . 
H 4 HOH A 66 566 35 HOH HOH . 
H 4 HOH A 67 567 26 HOH HOH . 
H 4 HOH A 68 568 108 HOH HOH . 
H 4 HOH A 69 569 20 HOH HOH . 
H 4 HOH A 70 570 3 HOH HOH . 
H 4 HOH A 71 571 89 HOH HOH . 
H 4 HOH A 72 572 125 HOH HOH . 
H 4 HOH A 73 573 50 HOH HOH . 
H 4 HOH A 74 574 47 HOH HOH . 
H 4 HOH A 75 575 12 HOH HOH . 
H 4 HOH A 76 576 128 HOH HOH . 
H 4 HOH A 77 577 5 HOH HOH . 
H 4 HOH A 78 578 104 HOH HOH . 
H 4 HOH A 79 579 87 HOH HOH . 
H 4 HOH A 80 580 44 HOH HOH . 
H 4 HOH A 81 581 88 HOH HOH . 
H 4 HOH A 82 582 58 HOH HOH . 
H 4 HOH A 83 583 21 HOH HOH . 
H 4 HOH A 84 584 42 HOH HOH . 
H 4 HOH A 85 585 57 HOH HOH . 
H 4 HOH A 86 586 130 HOH HOH . 
H 4 HOH A 87 587 98 HOH HOH . 
H 4 HOH A 88 588 9 HOH HOH . 
H 4 HOH A 89 589 34 HOH HOH . 
H 4 HOH A 90 590 1 HOH HOH . 
H 4 HOH A 91 591 46 HOH HOH . 
H 4 HOH A 92 592 120 HOH HOH . 
H 4 HOH A 93 593 133 HOH HOH . 
H 4 HOH A 94 594 56 HOH HOH . 
H 4 HOH A 95 595 111 HOH HOH . 
H 4 HOH A 96 596 127 HOH HOH . 
H 4 HOH A 97 597 16 HOH HOH . 
H 4 HOH A 98 598 84 HOH HOH . 
H 4 HOH A 99 599 101 HOH HOH . 
H 4 HOH A 100 600 107 HOH HOH . 
H 4 HOH A 101 601 100 HOH HOH . 
H 4 HOH A 102 602 92 HOH HOH . 
H 4 HOH A 103 603 124 HOH HOH . 
H 4 HOH A 104 604 2 HOH HOH . 
H 4 HOH A 105 605 28 HOH HOH . 
H 4 HOH A 106 606 52 HOH HOH . 
H 4 HOH A 107 607 32 HOH HOH . 
H 4 HOH A 108 608 59 HOH HOH . 
H 4 HOH A 109 609 90 HOH HOH . 
H 4 HOH A 110 610 119 HOH HOH . 
H 4 HOH A 111 611 65 HOH HOH . 
H 4 HOH A 112 612 129 HOH HOH . 
H 4 HOH A 113 613 122 HOH HOH . 
H 4 HOH A 114 614 72 HOH HOH . 
H 4 HOH A 115 615 51 HOH HOH . 
H 4 HOH A 116 616 25 HOH HOH . 
H 4 HOH A 117 617 74 HOH HOH . 
H 4 HOH A 118 618 85 HOH HOH . 
H 4 HOH A 119 619 71 HOH HOH . 
H 4 HOH A 120 620 68 HOH HOH . 
H 4 HOH A 121 621 115 HOH HOH . 
H 4 HOH A 122 622 132 HOH HOH . 
H 4 HOH A 123 623 105 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CA A6L . . . D 3 26.835 16.332 29.624 1 38.71 ? CA A6L 403 A 1 
HETATM 2 C C A6L . . . D 3 25.616 15.482 29.983 1 39.67 ? C A6L 403 A 1 
HETATM 3 O O A6L . . . D 3 25.586 14.608 31.09 1 40.42 ? O A6L 403 A 1 
HETATM 4 C C3 A6L . . . D 3 26.441 17.798 29.635 1 36.18 ? C3 A6L 403 A 1 
HETATM 5 C C4 A6L . . . D 3 27.61 18.748 29.464 1 37.52 ? C4 A6L 403 A 1 
HETATM 6 C C5 A6L . . . D 3 27.911 19.577 30.712 1 41.03 ? C5 A6L 403 A 1 
HETATM 7 C C6 A6L . . . D 3 27.522 21.053 30.596 1 40.98 ? C6 A6L 403 A 1 
HETATM 8 C C7 A6L . . . D 3 28.723 21.987 30.459 1 45.56 ? C7 A6L 403 A 1 
HETATM 9 C C8 A6L . . . D 3 28.471 23.406 30.983 1 41.54 ? C8 A6L 403 A 1 
HETATM 10 C C9 A6L . . . D 3 27.113 23.454 31.691 1 40.39 ? C9 A6L 403 A 1 
HETATM 11 C C10 A6L . . . D 3 27.006 24.065 32.849 1 39.8 ? C10 A6L 403 A 1 
HETATM 12 C C11 A6L . . . D 3 25.658 24.107 33.565 1 40.06 ? C11 A6L 403 A 1 
HETATM 13 C C12 A6L . . . D 3 25.699 25.082 34.744 1 51.87 ? C12 A6L 403 A 1 
HETATM 14 C C13 A6L . . . D 3 27.055 25.002 35.454 1 64.86 ? C13 A6L 403 A 1 
HETATM 15 C C14 A6L . . . D 3 27.04 25.465 36.915 1 68.3 ? C14 A6L 403 A 1 
HETATM 16 C C15 A6L . . . D 3 28.449 25.742 37.454 1 67.86 ? C15 A6L 403 A 1 
HETATM 17 C C16 A6L . . . D 3 29.116 24.509 38.076 1 69.76 ? C16 A6L 403 A 1 
HETATM 18 C C17 A6L . . . D 3 28.139 23.384 38.429 1 70.38 ? C17 A6L 403 A 1 
HETATM 19 C C18 A6L . . . D 3 28.36 22.125 37.59 1 66.42 ? C18 A6L 403 A 1 
HETATM 20 O OXT A6L . . . D 3 24.662 15.615 29.327 1 37.94 ? OXT A6L 403 A 1 
HETATM 21 C C1 A6L . . . D 3 26.382 13.457 31.059 1 34.28 ? C1 A6L 403 A 1 
HETATM 22 C C2 A6L . . . D 3 26.49 12.982 32.513 1 36.79 ? C2 A6L 403 A 1 
HETATM 23 C C19 A6L . . . D 3 27.426 11.804 32.758 1 37.43 ? C19 A6L 403 A 1 
HETATM 24 O O2 A6L . . . D 3 27.892 11.95 34.072 1 41.08 ? O2 A6L 403 A 1 
HETATM 25 O O1 A6L . . . D 3 26.984 14.038 33.284 1 42.71 ? O1 A6L 403 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           284 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           25 
#