data_6LGY # _model_server_result.job_id YRf4FlcsTyCfas-45uJMJg _model_server_result.datetime_utc '2024-11-28 12:31:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6lgy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 6LGY # _exptl.entry_id 6LGY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 75.067 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6LGY _cell.length_a 45.469 _cell.length_b 185.578 _cell.length_c 75.081 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6LGY _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 15 A CYS 10 1_555 A SG CYS 296 A CYS 291 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? metalc ? metalc1 A OG SER 109 A SER 104 1_555 D NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc2 A O GLY 110 A GLY 105 1_555 D NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc3 A OG SER 113 A SER 108 1_555 D NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? metalc ? metalc4 A OG SER 131 A SER 126 1_555 D NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.544 ? metalc ? metalc5 A O GLU 259 A GLU 254 1_555 C NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc6 A O VAL 260 A VAL 255 1_555 C NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc7 A O MET 262 A MET 257 1_555 C NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? metalc ? metalc8 A OE1 GLN 263 A GLN 258 1_555 C NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc9 D NA NA . A NA 403 1_555 G O HOH . A HOH 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc10 D NA NA . A NA 403 1_555 G O HOH . A HOH 532 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? # _chem_comp.formula 'C2 H5 N O2' _chem_comp.formula_weight 75.067 _chem_comp.id GLY _chem_comp.mon_nstd_flag y _chem_comp.name GLYCINE _chem_comp.type 'peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA GLY sing 249 n n N H GLY sing 250 n n N H2 GLY sing 251 n n CA C GLY sing 252 n n CA HA2 GLY sing 253 n n CA HA3 GLY sing 254 n n C O GLY doub 255 n n C OXT GLY sing 256 n n OXT HXT GLY sing 257 n n # _atom_sites.entry_id 6LGY _atom_sites.fract_transf_matrix[1][1] 0.021993 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005389 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013319 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GLY A 1 401 401 GLY GLY . C 3 NA A 1 402 501 NA NA . D 3 NA A 1 403 502 NA NA . E 4 2PE A 1 404 601 2PE 2PE . F 5 A6L A 1 405 701 A6L 9MO . G 6 HOH A 1 501 29 HOH HOH . G 6 HOH A 2 502 8 HOH HOH . G 6 HOH A 3 503 15 HOH HOH . G 6 HOH A 4 504 2 HOH HOH . G 6 HOH A 5 505 5 HOH HOH . G 6 HOH A 6 506 46 HOH HOH . G 6 HOH A 7 507 47 HOH HOH . G 6 HOH A 8 508 13 HOH HOH . G 6 HOH A 9 509 10 HOH HOH . G 6 HOH A 10 510 7 HOH HOH . G 6 HOH A 11 511 6 HOH HOH . G 6 HOH A 12 512 14 HOH HOH . G 6 HOH A 13 513 4 HOH HOH . G 6 HOH A 14 514 37 HOH HOH . G 6 HOH A 15 515 20 HOH HOH . G 6 HOH A 16 516 22 HOH HOH . G 6 HOH A 17 517 44 HOH HOH . G 6 HOH A 18 518 27 HOH HOH . G 6 HOH A 19 519 42 HOH HOH . G 6 HOH A 20 520 21 HOH HOH . G 6 HOH A 21 521 1 HOH HOH . G 6 HOH A 22 522 38 HOH HOH . G 6 HOH A 23 523 17 HOH HOH . G 6 HOH A 24 524 9 HOH HOH . G 6 HOH A 25 525 25 HOH HOH . G 6 HOH A 26 526 12 HOH HOH . G 6 HOH A 27 527 24 HOH HOH . G 6 HOH A 28 528 30 HOH HOH . G 6 HOH A 29 529 19 HOH HOH . G 6 HOH A 30 530 33 HOH HOH . G 6 HOH A 31 531 32 HOH HOH . G 6 HOH A 32 532 3 HOH HOH . G 6 HOH A 33 533 16 HOH HOH . G 6 HOH A 34 534 45 HOH HOH . G 6 HOH A 35 535 18 HOH HOH . G 6 HOH A 36 536 41 HOH HOH . G 6 HOH A 37 537 36 HOH HOH . G 6 HOH A 38 538 40 HOH HOH . G 6 HOH A 39 539 39 HOH HOH . G 6 HOH A 40 540 48 HOH HOH . G 6 HOH A 41 541 11 HOH HOH . G 6 HOH A 42 542 28 HOH HOH . G 6 HOH A 43 543 49 HOH HOH . G 6 HOH A 44 544 26 HOH HOH . G 6 HOH A 45 545 35 HOH HOH . G 6 HOH A 46 546 43 HOH HOH . G 6 HOH A 47 547 23 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N GLY . . . B 2 -10.3 -27.692 0.83 1 58.11 ? N GLY 401 A 1 HETATM 2 C CA GLY . . . B 2 -9.287 -27.776 1.87 1 68.69 ? CA GLY 401 A 1 HETATM 3 C C GLY . . . B 2 -8.507 -26.49 2.034 1 74.05 ? C GLY 401 A 1 HETATM 4 O O GLY . . . B 2 -8.064 -25.881 1.059 1 79.25 ? O GLY 401 A 1 HETATM 5 O OXT GLY . . . B 2 -8.309 -26.018 3.149 1 75.34 ? OXT GLY 401 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 690 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 5 #