data_6LGY # _model_server_result.job_id M7km9Vlrg0KBQBfNmLLSwA _model_server_result.datetime_utc '2024-11-08 15:43:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6lgy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":404}' # _entry.id 6LGY # _exptl.entry_id 6LGY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 414.488 _entity.id 4 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 'NONAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6LGY _cell.length_a 45.469 _cell.length_b 185.578 _cell.length_c 75.081 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6LGY _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 15 A CYS 10 1_555 A SG CYS 296 A CYS 291 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? metalc ? metalc1 A OG SER 109 A SER 104 1_555 D NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc2 A O GLY 110 A GLY 105 1_555 D NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc3 A OG SER 113 A SER 108 1_555 D NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? metalc ? metalc4 A OG SER 131 A SER 126 1_555 D NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.544 ? metalc ? metalc5 A O GLU 259 A GLU 254 1_555 C NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc6 A O VAL 260 A VAL 255 1_555 C NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc7 A O MET 262 A MET 257 1_555 C NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? metalc ? metalc8 A OE1 GLN 263 A GLN 258 1_555 C NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc9 D NA NA . A NA 403 1_555 G O HOH . A HOH 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc10 D NA NA . A NA 403 1_555 G O HOH . A HOH 532 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? # _chem_comp.formula 'C18 H38 O10' _chem_comp.formula_weight 414.488 _chem_comp.id 2PE _chem_comp.mon_nstd_flag . _chem_comp.name 'NONAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C2 2PE sing 1 n n O1 HO1 2PE sing 2 n n C2 C3 2PE sing 3 n n C2 H21 2PE sing 4 n n C2 H22 2PE sing 5 n n C3 O4 2PE sing 6 n n C3 H31 2PE sing 7 n n C3 H32 2PE sing 8 n n O4 C5 2PE sing 9 n n C5 C6 2PE sing 10 n n C5 H51 2PE sing 11 n n C5 H52 2PE sing 12 n n C6 O7 2PE sing 13 n n C6 H61 2PE sing 14 n n C6 H62 2PE sing 15 n n O7 C8 2PE sing 16 n n C8 C9 2PE sing 17 n n C8 H81 2PE sing 18 n n C8 H82 2PE sing 19 n n C9 O10 2PE sing 20 n n C9 H91 2PE sing 21 n n C9 H92 2PE sing 22 n n O10 C11 2PE sing 23 n n C11 C12 2PE sing 24 n n C11 H111 2PE sing 25 n n C11 H112 2PE sing 26 n n C12 O13 2PE sing 27 n n C12 H121 2PE sing 28 n n C12 H122 2PE sing 29 n n O13 C14 2PE sing 30 n n C14 C15 2PE sing 31 n n C14 H141 2PE sing 32 n n C14 H142 2PE sing 33 n n C15 O16 2PE sing 34 n n C15 H151 2PE sing 35 n n C15 H152 2PE sing 36 n n O16 C17 2PE sing 37 n n C17 C18 2PE sing 38 n n C17 H171 2PE sing 39 n n C17 H172 2PE sing 40 n n C18 O19 2PE sing 41 n n C18 H181 2PE sing 42 n n C18 H182 2PE sing 43 n n O19 C20 2PE sing 44 n n C20 C21 2PE sing 45 n n C20 H201 2PE sing 46 n n C20 H202 2PE sing 47 n n C21 O22 2PE sing 48 n n C21 H211 2PE sing 49 n n C21 H212 2PE sing 50 n n O22 C23 2PE sing 51 n n C23 C24 2PE sing 52 n n C23 H231 2PE sing 53 n n C23 H232 2PE sing 54 n n C24 O25 2PE sing 55 n n C24 H241 2PE sing 56 n n C24 H242 2PE sing 57 n n O25 C26 2PE sing 58 n n C26 C27 2PE sing 59 n n C26 H261 2PE sing 60 n n C26 H262 2PE sing 61 n n C27 O28 2PE sing 62 n n C27 H271 2PE sing 63 n n C27 H272 2PE sing 64 n n O28 HO2 2PE sing 65 n n # _atom_sites.entry_id 6LGY _atom_sites.fract_transf_matrix[1][1] 0.021993 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005389 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013319 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GLY A 1 401 401 GLY GLY . C 3 NA A 1 402 501 NA NA . D 3 NA A 1 403 502 NA NA . E 4 2PE A 1 404 601 2PE 2PE . F 5 A6L A 1 405 701 A6L 9MO . G 6 HOH A 1 501 29 HOH HOH . G 6 HOH A 2 502 8 HOH HOH . G 6 HOH A 3 503 15 HOH HOH . G 6 HOH A 4 504 2 HOH HOH . G 6 HOH A 5 505 5 HOH HOH . G 6 HOH A 6 506 46 HOH HOH . G 6 HOH A 7 507 47 HOH HOH . G 6 HOH A 8 508 13 HOH HOH . G 6 HOH A 9 509 10 HOH HOH . G 6 HOH A 10 510 7 HOH HOH . G 6 HOH A 11 511 6 HOH HOH . G 6 HOH A 12 512 14 HOH HOH . G 6 HOH A 13 513 4 HOH HOH . G 6 HOH A 14 514 37 HOH HOH . G 6 HOH A 15 515 20 HOH HOH . G 6 HOH A 16 516 22 HOH HOH . G 6 HOH A 17 517 44 HOH HOH . G 6 HOH A 18 518 27 HOH HOH . G 6 HOH A 19 519 42 HOH HOH . G 6 HOH A 20 520 21 HOH HOH . G 6 HOH A 21 521 1 HOH HOH . G 6 HOH A 22 522 38 HOH HOH . G 6 HOH A 23 523 17 HOH HOH . G 6 HOH A 24 524 9 HOH HOH . G 6 HOH A 25 525 25 HOH HOH . G 6 HOH A 26 526 12 HOH HOH . G 6 HOH A 27 527 24 HOH HOH . G 6 HOH A 28 528 30 HOH HOH . G 6 HOH A 29 529 19 HOH HOH . G 6 HOH A 30 530 33 HOH HOH . G 6 HOH A 31 531 32 HOH HOH . G 6 HOH A 32 532 3 HOH HOH . G 6 HOH A 33 533 16 HOH HOH . G 6 HOH A 34 534 45 HOH HOH . G 6 HOH A 35 535 18 HOH HOH . G 6 HOH A 36 536 41 HOH HOH . G 6 HOH A 37 537 36 HOH HOH . G 6 HOH A 38 538 40 HOH HOH . G 6 HOH A 39 539 39 HOH HOH . G 6 HOH A 40 540 48 HOH HOH . G 6 HOH A 41 541 11 HOH HOH . G 6 HOH A 42 542 28 HOH HOH . G 6 HOH A 43 543 49 HOH HOH . G 6 HOH A 44 544 26 HOH HOH . G 6 HOH A 45 545 35 HOH HOH . G 6 HOH A 46 546 43 HOH HOH . G 6 HOH A 47 547 23 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 2PE . . . E 4 -13.742 -39.921 4.407 1 58.62 ? O1 2PE 404 A 1 HETATM 2 C C2 2PE . . . E 4 -14.614 -40.751 5.14 1 57.49 ? C2 2PE 404 A 1 HETATM 3 C C3 2PE . . . E 4 -14.356 -42.232 4.819 1 62.55 ? C3 2PE 404 A 1 HETATM 4 O O4 2PE . . . E 4 -15.392 -42.815 4.053 1 78.71 ? O4 2PE 404 A 1 HETATM 5 C C5 2PE . . . E 4 -15.953 -42.038 3.016 1 80.43 ? C5 2PE 404 A 1 HETATM 6 C C6 2PE . . . E 4 -15.36 -42.426 1.659 1 78.9 ? C6 2PE 404 A 1 HETATM 7 O O7 2PE . . . E 4 -15.723 -41.518 0.654 1 77.39 ? O7 2PE 404 A 1 HETATM 8 C C8 2PE . . . E 4 -14.694 -41.28 -0.269 1 71.04 ? C8 2PE 404 A 1 HETATM 9 C C9 2PE . . . E 4 -14.521 -39.779 -0.485 1 69.61 ? C9 2PE 404 A 1 HETATM 10 O O10 2PE . . . E 4 -13.164 -39.42 -0.512 1 65.34 ? O10 2PE 404 A 1 HETATM 11 C C11 2PE . . . E 4 -12.921 -38.179 0.081 1 50.48 ? C11 2PE 404 A 1 HETATM 12 C C12 2PE . . . E 4 -11.424 -37.957 0.162 1 46.55 ? C12 2PE 404 A 1 HETATM 13 O O13 2PE . . . E 4 -11.048 -37.998 1.508 1 55.28 ? O13 2PE 404 A 1 HETATM 14 C C14 2PE . . . E 4 -9.99 -38.848 1.848 1 57.55 ? C14 2PE 404 A 1 HETATM 15 C C15 2PE . . . E 4 -10.273 -39.369 3.259 1 62.78 ? C15 2PE 404 A 1 HETATM 16 O O16 2PE . . . E 4 -9.402 -40.403 3.622 1 65.99 ? O16 2PE 404 A 1 HETATM 17 C C17 2PE . . . E 4 -10.028 -41.477 4.272 1 65.67 ? C17 2PE 404 A 1 HETATM 18 C C18 2PE . . . E 4 -9.125 -42.707 4.19 1 71.95 ? C18 2PE 404 A 1 HETATM 19 O O19 2PE . . . E 4 -9.866 -43.899 4.19 1 79.68 ? O19 2PE 404 A 1 HETATM 20 C C20 2PE . . . E 4 -9.469 -44.779 5.211 1 83.72 ? C20 2PE 404 A 1 HETATM 21 C C21 2PE . . . E 4 -9.653 -46.254 4.853 1 88.23 ? C21 2PE 404 A 1 HETATM 22 O O22 2PE . . . E 4 -8.659 -47.009 5.501 1 90.26 ? O22 2PE 404 A 1 HETATM 23 C C23 2PE . . . E 4 -8.548 -48.335 5.056 1 90.91 ? C23 2PE 404 A 1 HETATM 24 C C24 2PE . . . E 4 -7.081 -48.766 4.96 1 92.59 ? C24 2PE 404 A 1 HETATM 25 O O25 2PE . . . E 4 -6.791 -49.182 3.649 1 91.15 ? O25 2PE 404 A 1 HETATM 26 C C26 2PE . . . E 4 -5.434 -49.376 3.349 1 85.38 ? C26 2PE 404 A 1 HETATM 27 C C27 2PE . . . E 4 -4.692 -48.037 3.379 1 83.05 ? C27 2PE 404 A 1 HETATM 28 O O28 2PE . . . E 4 -3.853 -47.871 2.267 1 79.54 ? O28 2PE 404 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 229 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 28 #