data_6LGY # _model_server_result.job_id '_MHCVXcGYlyjzJsfHYHHOw' _model_server_result.datetime_utc '2024-11-24 20:08:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6lgy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":405}' # _entry.id 6LGY # _exptl.entry_id 6LGY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6LGY _cell.length_a 45.469 _cell.length_b 185.578 _cell.length_c 75.081 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6LGY _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 15 A CYS 10 1_555 A SG CYS 296 A CYS 291 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? metalc ? metalc1 A OG SER 109 A SER 104 1_555 D NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc2 A O GLY 110 A GLY 105 1_555 D NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc3 A OG SER 113 A SER 108 1_555 D NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? metalc ? metalc4 A OG SER 131 A SER 126 1_555 D NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.544 ? metalc ? metalc5 A O GLU 259 A GLU 254 1_555 C NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc6 A O VAL 260 A VAL 255 1_555 C NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc7 A O MET 262 A MET 257 1_555 C NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? metalc ? metalc8 A OE1 GLN 263 A GLN 258 1_555 C NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc9 D NA NA . A NA 403 1_555 G O HOH . A HOH 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc10 D NA NA . A NA 403 1_555 G O HOH . A HOH 532 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id A6L _chem_comp.mon_nstd_flag . _chem_comp.name '2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms monoolein # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OXT C A6L doub 66 n n CA C A6L sing 67 n n CA C3 A6L sing 68 n n C O A6L sing 69 n n C4 C3 A6L sing 70 n n C4 C5 A6L sing 71 n n C6 C5 A6L sing 72 n n C6 C7 A6L sing 73 n n C17 C18 A6L sing 74 n n C17 C16 A6L sing 75 n n C16 C15 A6L sing 76 n n C8 C7 A6L sing 77 n n C8 C9 A6L sing 78 n n C14 C15 A6L sing 79 n n C14 C13 A6L sing 80 n n C9 C10 A6L doub 81 z n C12 C13 A6L sing 82 n n C12 C11 A6L sing 83 n n C10 C11 A6L sing 84 n n CA H1 A6L sing 85 n n CA H2 A6L sing 86 n n C3 H4 A6L sing 87 n n C3 H5 A6L sing 88 n n C4 H6 A6L sing 89 n n C4 H7 A6L sing 90 n n C5 H8 A6L sing 91 n n C5 H9 A6L sing 92 n n C6 H10 A6L sing 93 n n C6 H11 A6L sing 94 n n C7 H12 A6L sing 95 n n C7 H13 A6L sing 96 n n C8 H14 A6L sing 97 n n C8 H15 A6L sing 98 n n C9 H16 A6L sing 99 n n C10 H17 A6L sing 100 n n C11 H18 A6L sing 101 n n C11 H19 A6L sing 102 n n C12 H20 A6L sing 103 n n C12 H21 A6L sing 104 n n C13 H22 A6L sing 105 n n C13 H23 A6L sing 106 n n C14 H24 A6L sing 107 n n C14 H25 A6L sing 108 n n C15 H26 A6L sing 109 n n C15 H27 A6L sing 110 n n C16 H28 A6L sing 111 n n C16 H29 A6L sing 112 n n C17 H30 A6L sing 113 n n C17 H31 A6L sing 114 n n C18 H32 A6L sing 115 n n C18 H33 A6L sing 116 n n C18 H34 A6L sing 117 n n O C1 A6L sing 118 n n C1 C2 A6L sing 119 n n C2 C19 A6L sing 120 n n C19 O2 A6L sing 121 n n C2 O1 A6L sing 122 n n C1 H3 A6L sing 123 n n C1 H35 A6L sing 124 n n C2 H36 A6L sing 125 n n C19 H37 A6L sing 126 n n C19 H38 A6L sing 127 n n O2 H39 A6L sing 128 n n O1 H40 A6L sing 129 n n # _atom_sites.entry_id 6LGY _atom_sites.fract_transf_matrix[1][1] 0.021993 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005389 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013319 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GLY A 1 401 401 GLY GLY . C 3 NA A 1 402 501 NA NA . D 3 NA A 1 403 502 NA NA . E 4 2PE A 1 404 601 2PE 2PE . F 5 A6L A 1 405 701 A6L 9MO . G 6 HOH A 1 501 29 HOH HOH . G 6 HOH A 2 502 8 HOH HOH . G 6 HOH A 3 503 15 HOH HOH . G 6 HOH A 4 504 2 HOH HOH . G 6 HOH A 5 505 5 HOH HOH . G 6 HOH A 6 506 46 HOH HOH . G 6 HOH A 7 507 47 HOH HOH . G 6 HOH A 8 508 13 HOH HOH . G 6 HOH A 9 509 10 HOH HOH . G 6 HOH A 10 510 7 HOH HOH . G 6 HOH A 11 511 6 HOH HOH . G 6 HOH A 12 512 14 HOH HOH . G 6 HOH A 13 513 4 HOH HOH . G 6 HOH A 14 514 37 HOH HOH . G 6 HOH A 15 515 20 HOH HOH . G 6 HOH A 16 516 22 HOH HOH . G 6 HOH A 17 517 44 HOH HOH . G 6 HOH A 18 518 27 HOH HOH . G 6 HOH A 19 519 42 HOH HOH . G 6 HOH A 20 520 21 HOH HOH . G 6 HOH A 21 521 1 HOH HOH . G 6 HOH A 22 522 38 HOH HOH . G 6 HOH A 23 523 17 HOH HOH . G 6 HOH A 24 524 9 HOH HOH . G 6 HOH A 25 525 25 HOH HOH . G 6 HOH A 26 526 12 HOH HOH . G 6 HOH A 27 527 24 HOH HOH . G 6 HOH A 28 528 30 HOH HOH . G 6 HOH A 29 529 19 HOH HOH . G 6 HOH A 30 530 33 HOH HOH . G 6 HOH A 31 531 32 HOH HOH . G 6 HOH A 32 532 3 HOH HOH . G 6 HOH A 33 533 16 HOH HOH . G 6 HOH A 34 534 45 HOH HOH . G 6 HOH A 35 535 18 HOH HOH . G 6 HOH A 36 536 41 HOH HOH . G 6 HOH A 37 537 36 HOH HOH . G 6 HOH A 38 538 40 HOH HOH . G 6 HOH A 39 539 39 HOH HOH . G 6 HOH A 40 540 48 HOH HOH . G 6 HOH A 41 541 11 HOH HOH . G 6 HOH A 42 542 28 HOH HOH . G 6 HOH A 43 543 49 HOH HOH . G 6 HOH A 44 544 26 HOH HOH . G 6 HOH A 45 545 35 HOH HOH . G 6 HOH A 46 546 43 HOH HOH . G 6 HOH A 47 547 23 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CA A6L . . . F 5 6.562 -15.713 8.288 1 60.85 ? CA A6L 405 A 1 HETATM 2 C C A6L . . . F 5 7.921 -15.015 8.369 1 68.17 ? C A6L 405 A 1 HETATM 3 O O A6L . . . F 5 8.024 -13.746 8.974 1 71.98 ? O A6L 405 A 1 HETATM 4 C C3 A6L . . . F 5 6.639 -17.237 8.158 1 57.64 ? C3 A6L 405 A 1 HETATM 5 C C4 A6L . . . F 5 6.919 -17.946 9.48 1 55.19 ? C4 A6L 405 A 1 HETATM 6 C C5 A6L . . . F 5 6.818 -19.467 9.361 1 54.75 ? C5 A6L 405 A 1 HETATM 7 C C6 A6L . . . F 5 7.609 -20.216 10.437 1 56.14 ? C6 A6L 405 A 1 HETATM 8 C C7 A6L . . . F 5 7.471 -21.733 10.295 1 57.97 ? C7 A6L 405 A 1 HETATM 9 C C8 A6L . . . F 5 8.172 -22.509 11.414 1 61.87 ? C8 A6L 405 A 1 HETATM 10 C C9 A6L . . . F 5 7.862 -24.014 11.439 1 60.36 ? C9 A6L 405 A 1 HETATM 11 C C10 A6L . . . F 5 8.397 -24.835 10.554 1 63.95 ? C10 A6L 405 A 1 HETATM 12 C C11 A6L . . . F 5 9.327 -24.317 9.445 1 71.08 ? C11 A6L 405 A 1 HETATM 13 C C12 A6L . . . F 5 10.826 -24.467 9.716 1 74.4 ? C12 A6L 405 A 1 HETATM 14 C C13 A6L . . . F 5 11.56 -25.309 8.668 1 75.52 ? C13 A6L 405 A 1 HETATM 15 C C14 A6L . . . F 5 12.882 -25.868 9.211 1 77.62 ? C14 A6L 405 A 1 HETATM 16 C C15 A6L . . . F 5 13.632 -26.764 8.22 1 79.17 ? C15 A6L 405 A 1 HETATM 17 C C16 A6L . . . F 5 13.942 -28.16 8.776 1 76.62 ? C16 A6L 405 A 1 HETATM 18 C C17 A6L . . . F 5 14.634 -29.106 7.784 1 72.57 ? C17 A6L 405 A 1 HETATM 19 C C18 A6L . . . F 5 13.945 -29.238 6.422 1 68.22 ? C18 A6L 405 A 1 HETATM 20 O OXT A6L . . . F 5 8.88 -15.547 7.915 1 72.21 ? OXT A6L 405 A 1 HETATM 21 C C1 A6L . . . F 5 9.289 -13.145 8.982 1 72.73 ? C1 A6L 405 A 1 HETATM 22 C C2 A6L . . . F 5 9.308 -12.021 10.027 1 76.85 ? C2 A6L 405 A 1 HETATM 23 C C19 A6L . . . F 5 7.946 -11.873 10.704 1 79.54 ? C19 A6L 405 A 1 HETATM 24 O O2 A6L . . . F 5 8.105 -11.046 11.827 1 86.99 ? O2 A6L 405 A 1 HETATM 25 O O1 A6L . . . F 5 9.682 -10.8 9.448 1 77.93 ? O1 A6L 405 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 25 #