data_6LGZ # _model_server_result.job_id O5E15BMD168OWtkFfwWdDQ _model_server_result.datetime_utc '2024-11-21 16:14:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6lgz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":503}' # _entry.id 6LGZ # _exptl.entry_id 6LGZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6LGZ _cell.length_a 88.578 _cell.length_b 44.416 _cell.length_c 71.564 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6LGZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 15 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 10 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 296 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 291 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.023 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id A6L _chem_comp.mon_nstd_flag . _chem_comp.name '2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms monoolein # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OXT C A6L doub 1 n n CA C A6L sing 2 n n CA C3 A6L sing 3 n n C O A6L sing 4 n n C4 C3 A6L sing 5 n n C4 C5 A6L sing 6 n n C6 C5 A6L sing 7 n n C6 C7 A6L sing 8 n n C17 C18 A6L sing 9 n n C17 C16 A6L sing 10 n n C16 C15 A6L sing 11 n n C8 C7 A6L sing 12 n n C8 C9 A6L sing 13 n n C14 C15 A6L sing 14 n n C14 C13 A6L sing 15 n n C9 C10 A6L doub 16 z n C12 C13 A6L sing 17 n n C12 C11 A6L sing 18 n n C10 C11 A6L sing 19 n n CA H1 A6L sing 20 n n CA H2 A6L sing 21 n n C3 H4 A6L sing 22 n n C3 H5 A6L sing 23 n n C4 H6 A6L sing 24 n n C4 H7 A6L sing 25 n n C5 H8 A6L sing 26 n n C5 H9 A6L sing 27 n n C6 H10 A6L sing 28 n n C6 H11 A6L sing 29 n n C7 H12 A6L sing 30 n n C7 H13 A6L sing 31 n n C8 H14 A6L sing 32 n n C8 H15 A6L sing 33 n n C9 H16 A6L sing 34 n n C10 H17 A6L sing 35 n n C11 H18 A6L sing 36 n n C11 H19 A6L sing 37 n n C12 H20 A6L sing 38 n n C12 H21 A6L sing 39 n n C13 H22 A6L sing 40 n n C13 H23 A6L sing 41 n n C14 H24 A6L sing 42 n n C14 H25 A6L sing 43 n n C15 H26 A6L sing 44 n n C15 H27 A6L sing 45 n n C16 H28 A6L sing 46 n n C16 H29 A6L sing 47 n n C17 H30 A6L sing 48 n n C17 H31 A6L sing 49 n n C18 H32 A6L sing 50 n n C18 H33 A6L sing 51 n n C18 H34 A6L sing 52 n n O C1 A6L sing 53 n n C1 C2 A6L sing 54 n n C2 C19 A6L sing 55 n n C19 O2 A6L sing 56 n n C2 O1 A6L sing 57 n n C1 H3 A6L sing 58 n n C1 H35 A6L sing 59 n n C2 H36 A6L sing 60 n n C19 H37 A6L sing 61 n n C19 H38 A6L sing 62 n n O2 H39 A6L sing 63 n n O1 H40 A6L sing 64 n n # _atom_sites.entry_id 6LGZ _atom_sites.fract_transf_matrix[1][1] 0.011289 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022514 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013974 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 A6L A 1 501 501 A6L 9MO . C 2 A6L A 1 502 502 A6L 9MO . D 2 A6L A 1 503 503 A6L 9MO . E 2 A6L A 1 504 505 A6L 9MO . F 3 SO4 A 1 505 601 SO4 SO4 . G 4 HOH A 1 601 4 HOH HOH . G 4 HOH A 2 602 7 HOH HOH . G 4 HOH A 3 603 25 HOH HOH . G 4 HOH A 4 604 23 HOH HOH . G 4 HOH A 5 605 19 HOH HOH . G 4 HOH A 6 606 12 HOH HOH . G 4 HOH A 7 607 14 HOH HOH . G 4 HOH A 8 608 18 HOH HOH . G 4 HOH A 9 609 28 HOH HOH . G 4 HOH A 10 610 5 HOH HOH . G 4 HOH A 11 611 3 HOH HOH . G 4 HOH A 12 612 26 HOH HOH . G 4 HOH A 13 613 6 HOH HOH . G 4 HOH A 14 614 29 HOH HOH . G 4 HOH A 15 615 2 HOH HOH . G 4 HOH A 16 616 16 HOH HOH . G 4 HOH A 17 617 13 HOH HOH . G 4 HOH A 18 618 1 HOH HOH . G 4 HOH A 19 619 24 HOH HOH . G 4 HOH A 20 620 17 HOH HOH . G 4 HOH A 21 621 27 HOH HOH . G 4 HOH A 22 622 20 HOH HOH . G 4 HOH A 23 623 9 HOH HOH . G 4 HOH A 24 624 8 HOH HOH . G 4 HOH A 25 625 22 HOH HOH . G 4 HOH A 26 626 11 HOH HOH . G 4 HOH A 27 627 15 HOH HOH . G 4 HOH A 28 628 21 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CA A6L . . . D 2 12.489 -29.56 -35.833 1 58.33 ? CA A6L 503 A 1 HETATM 2 C C A6L . . . D 2 11.004 -29.306 -36.084 1 66.25 ? C A6L 503 A 1 HETATM 3 O O A6L . . . D 2 10.156 -28.975 -35.02 1 70.77 ? O A6L 503 A 1 HETATM 4 C C3 A6L . . . D 2 13.134 -28.456 -35 1 55.14 ? C3 A6L 503 A 1 HETATM 5 C C4 A6L . . . D 2 14.298 -28.971 -34.156 1 54.88 ? C4 A6L 503 A 1 HETATM 6 C C5 A6L . . . D 2 15.636 -28.385 -34.6 1 55.22 ? C5 A6L 503 A 1 HETATM 7 C C6 A6L . . . D 2 16.665 -28.359 -33.472 1 56.23 ? C6 A6L 503 A 1 HETATM 8 C C7 A6L . . . D 2 17.902 -27.543 -33.849 1 58.23 ? C7 A6L 503 A 1 HETATM 9 C C8 A6L . . . D 2 19.194 -28.182 -33.346 1 59.46 ? C8 A6L 503 A 1 HETATM 10 C C9 A6L . . . D 2 20.427 -27.58 -34.014 1 61.67 ? C9 A6L 503 A 1 HETATM 11 C C10 A6L . . . D 2 21.032 -26.536 -33.488 1 62.31 ? C10 A6L 503 A 1 HETATM 12 C C11 A6L . . . D 2 20.511 -25.908 -32.198 1 63.66 ? C11 A6L 503 A 1 HETATM 13 C C12 A6L . . . D 2 21.493 -24.894 -31.612 1 63.53 ? C12 A6L 503 A 1 HETATM 14 C C13 A6L . . . D 2 21.445 -23.55 -32.334 1 63.16 ? C13 A6L 503 A 1 HETATM 15 C C14 A6L . . . D 2 22.622 -22.654 -31.957 1 64.13 ? C14 A6L 503 A 1 HETATM 16 C C15 A6L . . . D 2 22.374 -21.19 -32.315 1 64.73 ? C15 A6L 503 A 1 HETATM 17 C C16 A6L . . . D 2 23.653 -20.358 -32.248 1 66.1 ? C16 A6L 503 A 1 HETATM 18 C C17 A6L . . . D 2 23.752 -19.365 -33.402 1 68.19 ? C17 A6L 503 A 1 HETATM 19 C C18 A6L . . . D 2 24.067 -17.95 -32.927 1 69 ? C18 A6L 503 A 1 HETATM 20 O OXT A6L . . . D 2 10.566 -29.396 -37.182 1 69.2 ? OXT A6L 503 A 1 HETATM 21 C C1 A6L . . . D 2 9.063 -29.839 -34.891 1 74.09 ? C1 A6L 503 A 1 HETATM 22 C C2 A6L . . . D 2 7.809 -29.039 -34.554 1 75.93 ? C2 A6L 503 A 1 HETATM 23 C C19 A6L . . . D 2 6.951 -29.85 -33.585 1 76.39 ? C19 A6L 503 A 1 HETATM 24 O O2 A6L . . . D 2 5.854 -29.07 -33.198 1 76.74 ? O2 A6L 503 A 1 HETATM 25 O O1 A6L . . . D 2 7.083 -28.825 -35.733 1 77.22 ? O1 A6L 503 A 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 348 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 25 #