data_6LH9 # _model_server_result.job_id 43N9FeDMmOY3KiVcYUpD2A _model_server_result.datetime_utc '2024-11-15 06:47:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6lh9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":803}' # _entry.id 6LH9 # _exptl.entry_id 6LH9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6LH9 _cell.length_a 57.703 _cell.length_b 155.878 _cell.length_c 164.8 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6LH9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 277 n n PA O2A NDP sing 278 n n PA O5B NDP sing 279 n n PA O3 NDP sing 280 n n O2A HOA2 NDP sing 281 n n O5B C5B NDP sing 282 n n C5B C4B NDP sing 283 n n C5B H51A NDP sing 284 n n C5B H52A NDP sing 285 n n C4B O4B NDP sing 286 n n C4B C3B NDP sing 287 n n C4B H4B NDP sing 288 n n O4B C1B NDP sing 289 n n C3B O3B NDP sing 290 n n C3B C2B NDP sing 291 n n C3B H3B NDP sing 292 n n O3B HO3A NDP sing 293 n n C2B O2B NDP sing 294 n n C2B C1B NDP sing 295 n n C2B H2B NDP sing 296 n n O2B P2B NDP sing 297 n n C1B N9A NDP sing 298 n n C1B H1B NDP sing 299 n n N9A C8A NDP sing 300 n y N9A C4A NDP sing 301 n y C8A N7A NDP doub 302 n y C8A H8A NDP sing 303 n n N7A C5A NDP sing 304 n y C5A C6A NDP sing 305 n y C5A C4A NDP doub 306 n y C6A N6A NDP sing 307 n n C6A N1A NDP doub 308 n y N6A H61A NDP sing 309 n n N6A H62A NDP sing 310 n n N1A C2A NDP sing 311 n y C2A N3A NDP doub 312 n y C2A H2A NDP sing 313 n n N3A C4A NDP sing 314 n y O3 PN NDP sing 315 n n PN O1N NDP doub 316 n n PN O2N NDP sing 317 n n PN O5D NDP sing 318 n n O2N H21N NDP sing 319 n n O5D C5D NDP sing 320 n n C5D C4D NDP sing 321 n n C5D H51N NDP sing 322 n n C5D H52N NDP sing 323 n n C4D O4D NDP sing 324 n n C4D C3D NDP sing 325 n n C4D H4D NDP sing 326 n n O4D C1D NDP sing 327 n n C3D O3D NDP sing 328 n n C3D C2D NDP sing 329 n n C3D H3D NDP sing 330 n n O3D HO3N NDP sing 331 n n C2D O2D NDP sing 332 n n C2D C1D NDP sing 333 n n C2D H2D NDP sing 334 n n O2D HO2N NDP sing 335 n n C1D N1N NDP sing 336 n n C1D H1D NDP sing 337 n n N1N C2N NDP sing 338 n n N1N C6N NDP sing 339 n n C2N C3N NDP doub 340 n n C2N H2N NDP sing 341 n n C3N C7N NDP sing 342 n n C3N C4N NDP sing 343 n n C7N O7N NDP doub 344 n n C7N N7N NDP sing 345 n n N7N H71N NDP sing 346 n n N7N H72N NDP sing 347 n n C4N C5N NDP sing 348 n n C4N H41N NDP sing 349 n n C4N H42N NDP sing 350 n n C5N C6N NDP doub 351 n n C5N H5N NDP sing 352 n n C6N H6N NDP sing 353 n n P2B O1X NDP doub 354 n n P2B O2X NDP sing 355 n n P2B O3X NDP sing 356 n n O2X HOP2 NDP sing 357 n n O3X HOP3 NDP sing 358 n n # _atom_sites.entry_id 6LH9 _atom_sites.fract_transf_matrix[1][1] 0.01733 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006415 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006068 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PO4 A 1 801 801 PO4 PO4 . D 3 EA0 A 1 802 901 EA0 DRG . E 4 NDP A 1 803 1001 NDP NDP . F 2 PO4 A 1 804 801 PO4 PO4 . G 3 EA0 B 1 901 901 EA0 DRG . H 4 NDP B 1 902 1001 NDP NDP . I 5 HOH A 1 901 43 HOH HOH . I 5 HOH A 2 902 44 HOH HOH . I 5 HOH A 3 903 23 HOH HOH . I 5 HOH A 4 904 8 HOH HOH . I 5 HOH A 5 905 12 HOH HOH . I 5 HOH A 6 906 25 HOH HOH . I 5 HOH A 7 907 46 HOH HOH . I 5 HOH A 8 908 11 HOH HOH . I 5 HOH A 9 909 39 HOH HOH . I 5 HOH A 10 910 41 HOH HOH . I 5 HOH A 11 911 17 HOH HOH . I 5 HOH A 12 912 65 HOH HOH . I 5 HOH A 13 913 40 HOH HOH . I 5 HOH A 14 914 48 HOH HOH . I 5 HOH A 15 915 57 HOH HOH . I 5 HOH A 16 916 18 HOH HOH . I 5 HOH A 17 917 32 HOH HOH . I 5 HOH A 18 918 30 HOH HOH . I 5 HOH A 19 919 16 HOH HOH . I 5 HOH A 20 920 54 HOH HOH . I 5 HOH A 21 921 3 HOH HOH . I 5 HOH A 22 922 20 HOH HOH . I 5 HOH A 23 923 52 HOH HOH . I 5 HOH A 24 924 29 HOH HOH . I 5 HOH A 25 925 35 HOH HOH . I 5 HOH A 26 926 68 HOH HOH . I 5 HOH A 27 927 47 HOH HOH . I 5 HOH A 28 928 7 HOH HOH . I 5 HOH A 29 929 28 HOH HOH . I 5 HOH A 30 930 67 HOH HOH . I 5 HOH A 31 931 22 HOH HOH . I 5 HOH A 32 932 37 HOH HOH . I 5 HOH A 33 933 21 HOH HOH . I 5 HOH A 34 934 78 HOH HOH . I 5 HOH A 35 935 80 HOH HOH . I 5 HOH A 36 936 36 HOH HOH . I 5 HOH A 37 937 56 HOH HOH . I 5 HOH A 38 938 49 HOH HOH . I 5 HOH A 39 939 4 HOH HOH . I 5 HOH A 40 940 60 HOH HOH . I 5 HOH A 41 941 59 HOH HOH . I 5 HOH A 42 942 63 HOH HOH . I 5 HOH A 43 943 72 HOH HOH . I 5 HOH A 44 944 86 HOH HOH . I 5 HOH A 45 945 51 HOH HOH . I 5 HOH A 46 946 82 HOH HOH . I 5 HOH A 47 947 89 HOH HOH . I 5 HOH A 48 948 83 HOH HOH . I 5 HOH A 49 949 62 HOH HOH . I 5 HOH A 50 950 76 HOH HOH . J 5 HOH B 1 1001 84 HOH HOH . J 5 HOH B 2 1002 88 HOH HOH . J 5 HOH B 3 1003 13 HOH HOH . J 5 HOH B 4 1004 66 HOH HOH . J 5 HOH B 5 1005 1 HOH HOH . J 5 HOH B 6 1006 33 HOH HOH . J 5 HOH B 7 1007 9 HOH HOH . J 5 HOH B 8 1008 73 HOH HOH . J 5 HOH B 9 1009 42 HOH HOH . J 5 HOH B 10 1010 14 HOH HOH . J 5 HOH B 11 1011 50 HOH HOH . J 5 HOH B 12 1012 10 HOH HOH . J 5 HOH B 13 1013 26 HOH HOH . J 5 HOH B 14 1014 55 HOH HOH . J 5 HOH B 15 1015 19 HOH HOH . J 5 HOH B 16 1016 38 HOH HOH . J 5 HOH B 17 1017 69 HOH HOH . J 5 HOH B 18 1018 15 HOH HOH . J 5 HOH B 19 1019 27 HOH HOH . J 5 HOH B 20 1020 6 HOH HOH . J 5 HOH B 21 1021 53 HOH HOH . J 5 HOH B 22 1022 74 HOH HOH . J 5 HOH B 23 1023 81 HOH HOH . J 5 HOH B 24 1024 70 HOH HOH . J 5 HOH B 25 1025 58 HOH HOH . J 5 HOH B 26 1026 5 HOH HOH . J 5 HOH B 27 1027 31 HOH HOH . J 5 HOH B 28 1028 24 HOH HOH . J 5 HOH B 29 1029 45 HOH HOH . J 5 HOH B 30 1030 77 HOH HOH . J 5 HOH B 31 1031 2 HOH HOH . J 5 HOH B 32 1032 71 HOH HOH . J 5 HOH B 33 1033 75 HOH HOH . J 5 HOH B 34 1034 34 HOH HOH . J 5 HOH B 35 1035 85 HOH HOH . J 5 HOH B 36 1036 87 HOH HOH . J 5 HOH B 37 1037 61 HOH HOH . J 5 HOH B 38 1038 64 HOH HOH . J 5 HOH B 39 1039 79 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . E 4 -6.112 4.035 -68.682 1 66.22 ? PA NDP 803 A 1 HETATM 2 O O1A NDP . . . E 4 -4.767 4.292 -68.054 1 54.83 ? O1A NDP 803 A 1 HETATM 3 O O2A NDP . . . E 4 -7.144 3.225 -67.969 1 54.34 ? O2A NDP 803 A 1 HETATM 4 O O5B NDP . . . E 4 -5.895 3.477 -70.171 1 67.24 ? O5B NDP 803 A 1 HETATM 5 C C5B NDP . . . E 4 -7.02 2.992 -70.941 1 63.3 ? C5B NDP 803 A 1 HETATM 6 C C4B NDP . . . E 4 -6.471 2.405 -72.216 1 64.14 ? C4B NDP 803 A 1 HETATM 7 O O4B NDP . . . E 4 -5.886 1.108 -71.928 1 59.35 ? O4B NDP 803 A 1 HETATM 8 C C3B NDP . . . E 4 -7.476 2.145 -73.347 1 62.42 ? C3B NDP 803 A 1 HETATM 9 O O3B NDP . . . E 4 -7.667 3.314 -74.132 1 56.21 ? O3B NDP 803 A 1 HETATM 10 C C2B NDP . . . E 4 -6.77 1.024 -74.089 1 56.57 ? C2B NDP 803 A 1 HETATM 11 O O2B NDP . . . E 4 -5.563 1.433 -74.691 1 57.64 ? O2B NDP 803 A 1 HETATM 12 C C1B NDP . . . E 4 -6.293 0.191 -72.92 1 60.06 ? C1B NDP 803 A 1 HETATM 13 N N9A NDP . . . E 4 -7.305 -0.7 -72.378 1 63.12 ? N9A NDP 803 A 1 HETATM 14 C C8A NDP . . . E 4 -8.013 -0.565 -71.211 1 66.33 ? C8A NDP 803 A 1 HETATM 15 N N7A NDP . . . E 4 -8.832 -1.56 -70.983 1 63.59 ? N7A NDP 803 A 1 HETATM 16 C C5A NDP . . . E 4 -8.641 -2.417 -72.056 1 64.27 ? C5A NDP 803 A 1 HETATM 17 C C6A NDP . . . E 4 -9.211 -3.663 -72.39 1 62.01 ? C6A NDP 803 A 1 HETATM 18 N N6A NDP . . . E 4 -10.115 -4.297 -71.651 1 56.89 ? N6A NDP 803 A 1 HETATM 19 N N1A NDP . . . E 4 -8.793 -4.243 -73.536 1 68.75 ? N1A NDP 803 A 1 HETATM 20 C C2A NDP . . . E 4 -7.867 -3.611 -74.275 1 69.02 ? C2A NDP 803 A 1 HETATM 21 N N3A NDP . . . E 4 -7.27 -2.441 -74.07 1 61.98 ? N3A NDP 803 A 1 HETATM 22 C C4A NDP . . . E 4 -7.704 -1.89 -72.927 1 63.1 ? C4A NDP 803 A 1 HETATM 23 O O3 NDP . . . E 4 -6.805 5.413 -69.066 1 57.39 ? O3 NDP 803 A 1 HETATM 24 P PN NDP . . . E 4 -7.413 6.633 -68.245 1 60.49 ? PN NDP 803 A 1 HETATM 25 O O1N NDP . . . E 4 -8.735 6.157 -67.715 1 49.49 ? O1N NDP 803 A 1 HETATM 26 O O2N NDP . . . E 4 -7.301 7.826 -69.159 1 61.26 ? O2N NDP 803 A 1 HETATM 27 O O5D NDP . . . E 4 -6.37 6.8 -67.016 1 62.61 ? O5D NDP 803 A 1 HETATM 28 C C5D NDP . . . E 4 -5.084 7.49 -67.156 1 58.76 ? C5D NDP 803 A 1 HETATM 29 C C4D NDP . . . E 4 -5.009 8.661 -66.198 1 62.84 ? C4D NDP 803 A 1 HETATM 30 O O4D NDP . . . E 4 -5.207 8.188 -64.841 1 66.77 ? O4D NDP 803 A 1 HETATM 31 C C3D NDP . . . E 4 -3.675 9.436 -66.159 1 63.35 ? C3D NDP 803 A 1 HETATM 32 O O3D NDP . . . E 4 -3.86 10.824 -65.899 1 55.23 ? O3D NDP 803 A 1 HETATM 33 C C2D NDP . . . E 4 -2.935 8.743 -65.012 1 61.44 ? C2D NDP 803 A 1 HETATM 34 O O2D NDP . . . E 4 -1.857 9.526 -64.508 1 51.05 ? O2D NDP 803 A 1 HETATM 35 C C1D NDP . . . E 4 -4.107 8.566 -64.042 1 63.56 ? C1D NDP 803 A 1 HETATM 36 N N1N NDP . . . E 4 -3.875 7.515 -63.012 1 60.29 ? N1N NDP 803 A 1 HETATM 37 C C2N NDP . . . E 4 -3.805 7.863 -61.689 1 68.47 ? C2N NDP 803 A 1 HETATM 38 C C3N NDP . . . E 4 -3.827 6.926 -60.681 1 65.75 ? C3N NDP 803 A 1 HETATM 39 C C7N NDP . . . E 4 -4.239 7.352 -59.303 1 55.25 ? C7N NDP 803 A 1 HETATM 40 O O7N NDP . . . E 4 -4.384 6.484 -58.432 1 44.69 ? O7N NDP 803 A 1 HETATM 41 N N7N NDP . . . E 4 -4.479 8.637 -59.05 1 44.63 ? N7N NDP 803 A 1 HETATM 42 C C4N NDP . . . E 4 -3.446 5.529 -61.042 1 63.8 ? C4N NDP 803 A 1 HETATM 43 C C5N NDP . . . E 4 -3.367 5.292 -62.497 1 67.05 ? C5N NDP 803 A 1 HETATM 44 C C6N NDP . . . E 4 -3.691 6.212 -63.379 1 60.89 ? C6N NDP 803 A 1 HETATM 45 P P2B NDP . . . E 4 -5.657 1.737 -76.256 1 60.03 ? P2B NDP 803 A 1 HETATM 46 O O1X NDP . . . E 4 -6.688 0.796 -76.922 1 61.32 ? O1X NDP 803 A 1 HETATM 47 O O2X NDP . . . E 4 -6.014 3.202 -76.397 1 58.95 ? O2X NDP 803 A 1 HETATM 48 O O3X NDP . . . E 4 -4.22 1.473 -76.701 1 62.4 ? O3X NDP 803 A 1 HETATM 49 H H51A NDP . . . E 4 -7.559 2.22 -70.387 1 63.3 ? H51A NDP 803 A 1 HETATM 50 H H52A NDP . . . E 4 -7.701 3.811 -71.181 1 63.3 ? H52A NDP 803 A 1 HETATM 51 H H4B NDP . . . E 4 -5.717 3.116 -72.58 1 64.14 ? H4B NDP 803 A 1 HETATM 52 H H3B NDP . . . E 4 -8.443 1.766 -72.988 1 62.42 ? H3B NDP 803 A 1 HETATM 53 H HO3A NDP . . . E 4 -8.119 3.986 -73.604 0 56.21 ? HO3A NDP 803 A 1 HETATM 54 H H2B NDP . . . E 4 -7.466 0.675 -74.864 1 56.57 ? H2B NDP 803 A 1 HETATM 55 H H1B NDP . . . E 4 -5.449 -0.427 -73.257 1 60.06 ? H1B NDP 803 A 1 HETATM 56 H H8A NDP . . . E 4 -7.87 0.301 -70.576 1 66.33 ? H8A NDP 803 A 1 HETATM 57 H H61A NDP . . . E 4 -10.425 -3.907 -70.838 1 56.89 ? H61A NDP 803 A 1 HETATM 58 H H2A NDP . . . E 4 -7.63 -4.192 -75.157 1 69.02 ? H2A NDP 803 A 1 HETATM 59 H H51N NDP . . . E 4 -4.978 7.858 -68.178 1 58.76 ? H51N NDP 803 A 1 HETATM 60 H H52N NDP . . . E 4 -4.272 6.795 -66.934 1 58.76 ? H52N NDP 803 A 1 HETATM 61 H H4D NDP . . . E 4 -5.77 9.397 -66.492 1 62.84 ? H4D NDP 803 A 1 HETATM 62 H H3D NDP . . . E 4 -3.169 9.303 -67.126 1 63.35 ? H3D NDP 803 A 1 HETATM 63 H HO3N NDP . . . E 4 -3 11.266 -65.884 0 55.23 ? HO3N NDP 803 A 1 HETATM 64 H H2D NDP . . . E 4 -2.524 7.795 -65.388 1 61.44 ? H2D NDP 803 A 1 HETATM 65 H HO2N NDP . . . E 4 -1.421 9.049 -63.788 0 51.05 ? HO2N NDP 803 A 1 HETATM 66 H H1D NDP . . . E 4 -4.289 9.527 -63.541 1 63.56 ? H1D NDP 803 A 1 HETATM 67 H H2N NDP . . . E 4 -3.729 8.906 -61.407 1 68.47 ? H2N NDP 803 A 1 HETATM 68 H H71N NDP . . . E 4 -4.741 8.91 -58.175 1 44.63 ? H71N NDP 803 A 1 HETATM 69 H H41N NDP . . . E 4 -2.456 5.403 -60.598 1 63.8 ? H41N NDP 803 A 1 HETATM 70 H H42N NDP . . . E 4 -4.139 4.814 -60.594 1 63.8 ? H42N NDP 803 A 1 HETATM 71 H H5N NDP . . . E 4 -3.029 4.321 -62.829 1 67.05 ? H5N NDP 803 A 1 HETATM 72 H H6N NDP . . . E 4 -3.811 5.92 -64.412 1 60.89 ? H6N NDP 803 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 68 _model_server_stats.query_time_ms 250 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 72 #