data_6LH9 # _model_server_result.job_id RoNtTGEh3242gUtP7L3b0Q _model_server_result.datetime_utc '2024-11-15 07:03:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6lh9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":902}' # _entry.id 6LH9 # _exptl.entry_id 6LH9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6LH9 _cell.length_a 57.703 _cell.length_b 155.878 _cell.length_c 164.8 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6LH9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 277 n n PA O2A NDP sing 278 n n PA O5B NDP sing 279 n n PA O3 NDP sing 280 n n O2A HOA2 NDP sing 281 n n O5B C5B NDP sing 282 n n C5B C4B NDP sing 283 n n C5B H51A NDP sing 284 n n C5B H52A NDP sing 285 n n C4B O4B NDP sing 286 n n C4B C3B NDP sing 287 n n C4B H4B NDP sing 288 n n O4B C1B NDP sing 289 n n C3B O3B NDP sing 290 n n C3B C2B NDP sing 291 n n C3B H3B NDP sing 292 n n O3B HO3A NDP sing 293 n n C2B O2B NDP sing 294 n n C2B C1B NDP sing 295 n n C2B H2B NDP sing 296 n n O2B P2B NDP sing 297 n n C1B N9A NDP sing 298 n n C1B H1B NDP sing 299 n n N9A C8A NDP sing 300 n y N9A C4A NDP sing 301 n y C8A N7A NDP doub 302 n y C8A H8A NDP sing 303 n n N7A C5A NDP sing 304 n y C5A C6A NDP sing 305 n y C5A C4A NDP doub 306 n y C6A N6A NDP sing 307 n n C6A N1A NDP doub 308 n y N6A H61A NDP sing 309 n n N6A H62A NDP sing 310 n n N1A C2A NDP sing 311 n y C2A N3A NDP doub 312 n y C2A H2A NDP sing 313 n n N3A C4A NDP sing 314 n y O3 PN NDP sing 315 n n PN O1N NDP doub 316 n n PN O2N NDP sing 317 n n PN O5D NDP sing 318 n n O2N H21N NDP sing 319 n n O5D C5D NDP sing 320 n n C5D C4D NDP sing 321 n n C5D H51N NDP sing 322 n n C5D H52N NDP sing 323 n n C4D O4D NDP sing 324 n n C4D C3D NDP sing 325 n n C4D H4D NDP sing 326 n n O4D C1D NDP sing 327 n n C3D O3D NDP sing 328 n n C3D C2D NDP sing 329 n n C3D H3D NDP sing 330 n n O3D HO3N NDP sing 331 n n C2D O2D NDP sing 332 n n C2D C1D NDP sing 333 n n C2D H2D NDP sing 334 n n O2D HO2N NDP sing 335 n n C1D N1N NDP sing 336 n n C1D H1D NDP sing 337 n n N1N C2N NDP sing 338 n n N1N C6N NDP sing 339 n n C2N C3N NDP doub 340 n n C2N H2N NDP sing 341 n n C3N C7N NDP sing 342 n n C3N C4N NDP sing 343 n n C7N O7N NDP doub 344 n n C7N N7N NDP sing 345 n n N7N H71N NDP sing 346 n n N7N H72N NDP sing 347 n n C4N C5N NDP sing 348 n n C4N H41N NDP sing 349 n n C4N H42N NDP sing 350 n n C5N C6N NDP doub 351 n n C5N H5N NDP sing 352 n n C6N H6N NDP sing 353 n n P2B O1X NDP doub 354 n n P2B O2X NDP sing 355 n n P2B O3X NDP sing 356 n n O2X HOP2 NDP sing 357 n n O3X HOP3 NDP sing 358 n n # _atom_sites.entry_id 6LH9 _atom_sites.fract_transf_matrix[1][1] 0.01733 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006415 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006068 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PO4 A 1 801 801 PO4 PO4 . D 3 EA0 A 1 802 901 EA0 DRG . E 4 NDP A 1 803 1001 NDP NDP . F 2 PO4 A 1 804 801 PO4 PO4 . G 3 EA0 B 1 901 901 EA0 DRG . H 4 NDP B 1 902 1001 NDP NDP . I 5 HOH A 1 901 43 HOH HOH . I 5 HOH A 2 902 44 HOH HOH . I 5 HOH A 3 903 23 HOH HOH . I 5 HOH A 4 904 8 HOH HOH . I 5 HOH A 5 905 12 HOH HOH . I 5 HOH A 6 906 25 HOH HOH . I 5 HOH A 7 907 46 HOH HOH . I 5 HOH A 8 908 11 HOH HOH . I 5 HOH A 9 909 39 HOH HOH . I 5 HOH A 10 910 41 HOH HOH . I 5 HOH A 11 911 17 HOH HOH . I 5 HOH A 12 912 65 HOH HOH . I 5 HOH A 13 913 40 HOH HOH . I 5 HOH A 14 914 48 HOH HOH . I 5 HOH A 15 915 57 HOH HOH . I 5 HOH A 16 916 18 HOH HOH . I 5 HOH A 17 917 32 HOH HOH . I 5 HOH A 18 918 30 HOH HOH . I 5 HOH A 19 919 16 HOH HOH . I 5 HOH A 20 920 54 HOH HOH . I 5 HOH A 21 921 3 HOH HOH . I 5 HOH A 22 922 20 HOH HOH . I 5 HOH A 23 923 52 HOH HOH . I 5 HOH A 24 924 29 HOH HOH . I 5 HOH A 25 925 35 HOH HOH . I 5 HOH A 26 926 68 HOH HOH . I 5 HOH A 27 927 47 HOH HOH . I 5 HOH A 28 928 7 HOH HOH . I 5 HOH A 29 929 28 HOH HOH . I 5 HOH A 30 930 67 HOH HOH . I 5 HOH A 31 931 22 HOH HOH . I 5 HOH A 32 932 37 HOH HOH . I 5 HOH A 33 933 21 HOH HOH . I 5 HOH A 34 934 78 HOH HOH . I 5 HOH A 35 935 80 HOH HOH . I 5 HOH A 36 936 36 HOH HOH . I 5 HOH A 37 937 56 HOH HOH . I 5 HOH A 38 938 49 HOH HOH . I 5 HOH A 39 939 4 HOH HOH . I 5 HOH A 40 940 60 HOH HOH . I 5 HOH A 41 941 59 HOH HOH . I 5 HOH A 42 942 63 HOH HOH . I 5 HOH A 43 943 72 HOH HOH . I 5 HOH A 44 944 86 HOH HOH . I 5 HOH A 45 945 51 HOH HOH . I 5 HOH A 46 946 82 HOH HOH . I 5 HOH A 47 947 89 HOH HOH . I 5 HOH A 48 948 83 HOH HOH . I 5 HOH A 49 949 62 HOH HOH . I 5 HOH A 50 950 76 HOH HOH . J 5 HOH B 1 1001 84 HOH HOH . J 5 HOH B 2 1002 88 HOH HOH . J 5 HOH B 3 1003 13 HOH HOH . J 5 HOH B 4 1004 66 HOH HOH . J 5 HOH B 5 1005 1 HOH HOH . J 5 HOH B 6 1006 33 HOH HOH . J 5 HOH B 7 1007 9 HOH HOH . J 5 HOH B 8 1008 73 HOH HOH . J 5 HOH B 9 1009 42 HOH HOH . J 5 HOH B 10 1010 14 HOH HOH . J 5 HOH B 11 1011 50 HOH HOH . J 5 HOH B 12 1012 10 HOH HOH . J 5 HOH B 13 1013 26 HOH HOH . J 5 HOH B 14 1014 55 HOH HOH . J 5 HOH B 15 1015 19 HOH HOH . J 5 HOH B 16 1016 38 HOH HOH . J 5 HOH B 17 1017 69 HOH HOH . J 5 HOH B 18 1018 15 HOH HOH . J 5 HOH B 19 1019 27 HOH HOH . J 5 HOH B 20 1020 6 HOH HOH . J 5 HOH B 21 1021 53 HOH HOH . J 5 HOH B 22 1022 74 HOH HOH . J 5 HOH B 23 1023 81 HOH HOH . J 5 HOH B 24 1024 70 HOH HOH . J 5 HOH B 25 1025 58 HOH HOH . J 5 HOH B 26 1026 5 HOH HOH . J 5 HOH B 27 1027 31 HOH HOH . J 5 HOH B 28 1028 24 HOH HOH . J 5 HOH B 29 1029 45 HOH HOH . J 5 HOH B 30 1030 77 HOH HOH . J 5 HOH B 31 1031 2 HOH HOH . J 5 HOH B 32 1032 71 HOH HOH . J 5 HOH B 33 1033 75 HOH HOH . J 5 HOH B 34 1034 34 HOH HOH . J 5 HOH B 35 1035 85 HOH HOH . J 5 HOH B 36 1036 87 HOH HOH . J 5 HOH B 37 1037 61 HOH HOH . J 5 HOH B 38 1038 64 HOH HOH . J 5 HOH B 39 1039 79 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . H 4 4.998 -37.916 -3.996 1 110.28 ? PA NDP 902 B 1 HETATM 2 O O1A NDP . . . H 4 3.831 -37.185 -4.572 1 100.57 ? O1A NDP 902 B 1 HETATM 3 O O2A NDP . . . H 4 6.34 -37.827 -4.661 1 94.98 ? O2A NDP 902 B 1 HETATM 4 O O5B NDP . . . H 4 4.563 -39.445 -3.84 1 128.86 ? O5B NDP 902 B 1 HETATM 5 C C5B NDP . . . H 4 5.552 -40.474 -3.662 1 140.8 ? C5B NDP 902 B 1 HETATM 6 C C4B NDP . . . H 4 4.895 -41.792 -3.969 1 152.8 ? C4B NDP 902 B 1 HETATM 7 O O4B NDP . . . H 4 4.874 -41.991 -5.408 1 152.25 ? O4B NDP 902 B 1 HETATM 8 C C3B NDP . . . H 4 5.581 -43.039 -3.401 1 157.53 ? C3B NDP 902 B 1 HETATM 9 O O3B NDP . . . H 4 5.196 -43.277 -2.052 1 168.8 ? O3B NDP 902 B 1 HETATM 10 C C2B NDP . . . H 4 5.07 -44.078 -4.385 1 155.72 ? C2B NDP 902 B 1 HETATM 11 O O2B NDP . . . H 4 5.807 -45.284 -4.216 1 153.43 ? O2B NDP 902 B 1 HETATM 12 C C1B NDP . . . H 4 5.244 -43.319 -5.703 1 148.28 ? C1B NDP 902 B 1 HETATM 13 N N9A NDP . . . H 4 6.592 -43.299 -6.271 1 134.72 ? N9A NDP 902 B 1 HETATM 14 C C8A NDP . . . H 4 7.676 -42.589 -5.818 1 122.77 ? C8A NDP 902 B 1 HETATM 15 N N7A NDP . . . H 4 8.75 -42.75 -6.548 1 120.41 ? N7A NDP 902 B 1 HETATM 16 C C5A NDP . . . H 4 8.354 -43.607 -7.561 1 126.8 ? C5A NDP 902 B 1 HETATM 17 C C6A NDP . . . H 4 9.043 -44.169 -8.655 1 124.89 ? C6A NDP 902 B 1 HETATM 18 N N6A NDP . . . H 4 10.323 -43.934 -8.926 1 117.84 ? N6A NDP 902 B 1 HETATM 19 N N1A NDP . . . H 4 8.352 -44.993 -9.478 1 129.98 ? N1A NDP 902 B 1 HETATM 20 C C2A NDP . . . H 4 7.061 -45.225 -9.207 1 135.77 ? C2A NDP 902 B 1 HETATM 21 N N3A NDP . . . H 4 6.314 -44.758 -8.21 1 140.06 ? N3A NDP 902 B 1 HETATM 22 C C4A NDP . . . H 4 7.022 -43.943 -7.409 1 135.1 ? C4A NDP 902 B 1 HETATM 23 O O3 NDP . . . H 4 5.162 -37.524 -2.447 1 112.07 ? O3 NDP 902 B 1 HETATM 24 P PN NDP . . . H 4 6.305 -36.744 -1.631 1 111.93 ? PN NDP 902 B 1 HETATM 25 O O1N NDP . . . H 4 7.519 -36.664 -2.5 1 89.86 ? O1N NDP 902 B 1 HETATM 26 O O2N NDP . . . H 4 6.446 -37.328 -0.26 1 100.36 ? O2N NDP 902 B 1 HETATM 27 O O5D NDP . . . H 4 5.602 -35.304 -1.526 1 111.38 ? O5D NDP 902 B 1 HETATM 28 C C5D NDP . . . H 4 4.15 -35.24 -1.349 1 107.95 ? C5D NDP 902 B 1 HETATM 29 C C4D NDP . . . H 4 3.749 -33.842 -0.934 1 100.72 ? C4D NDP 902 B 1 HETATM 30 O O4D NDP . . . H 4 3.652 -33.013 -2.12 1 99.02 ? O4D NDP 902 B 1 HETATM 31 C C3D NDP . . . H 4 2.403 -33.693 -0.2 1 87.54 ? C3D NDP 902 B 1 HETATM 32 O O3D NDP . . . H 4 2.564 -32.929 0.99 1 73.24 ? O3D NDP 902 B 1 HETATM 33 C C2D NDP . . . H 4 1.526 -33.001 -1.25 1 87.05 ? C2D NDP 902 B 1 HETATM 34 O O2D NDP . . . H 4 0.49 -32.19 -0.71 1 77.1 ? O2D NDP 902 B 1 HETATM 35 C C1D NDP . . . H 4 2.553 -32.151 -1.992 1 89.32 ? C1D NDP 902 B 1 HETATM 36 N N1N NDP . . . H 4 2.144 -31.706 -3.357 1 89.16 ? N1N NDP 902 B 1 HETATM 37 C C2N NDP . . . H 4 3.018 -30.986 -4.128 1 91.06 ? C2N NDP 902 B 1 HETATM 38 C C3N NDP . . . H 4 2.555 -30.338 -5.229 1 93.43 ? C3N NDP 902 B 1 HETATM 39 C C7N NDP . . . H 4 2.92 -28.894 -5.44 1 98.22 ? C7N NDP 902 B 1 HETATM 40 O O7N NDP . . . H 4 3.071 -28.458 -6.585 1 103.11 ? O7N NDP 902 B 1 HETATM 41 N N7N NDP . . . H 4 3.046 -28.093 -4.389 1 91.13 ? N7N NDP 902 B 1 HETATM 42 C C4N NDP . . . H 4 1.611 -31.129 -6.052 1 88.18 ? C4N NDP 902 B 1 HETATM 43 C C5N NDP . . . H 4 0.666 -31.868 -5.177 1 86.83 ? C5N NDP 902 B 1 HETATM 44 C C6N NDP . . . H 4 0.887 -31.971 -3.881 1 85.33 ? C6N NDP 902 B 1 HETATM 45 P P2B NDP . . . H 4 5.074 -46.2 -3.089 1 151.53 ? P2B NDP 902 B 1 HETATM 46 O O1X NDP . . . H 4 4.47 -45.391 -1.954 1 126.84 ? O1X NDP 902 B 1 HETATM 47 O O2X NDP . . . H 4 4.001 -46.972 -3.836 1 149.92 ? O2X NDP 902 B 1 HETATM 48 O O3X NDP . . . H 4 6.213 -47.084 -2.602 1 150.8 ? O3X NDP 902 B 1 HETATM 49 H H51A NDP . . . H 4 6.391 -40.318 -4.343 1 140.8 ? H51A NDP 902 B 1 HETATM 50 H H52A NDP . . . H 4 5.915 -40.479 -2.632 1 140.8 ? H52A NDP 902 B 1 HETATM 51 H H4B NDP . . . H 4 3.878 -41.738 -3.555 1 152.8 ? H4B NDP 902 B 1 HETATM 52 H H3B NDP . . . H 4 6.677 -43.007 -3.47 1 157.53 ? H3B NDP 902 B 1 HETATM 53 H HO3A NDP . . . H 4 5.555 -42.58 -1.486 0 168.8 ? HO3A NDP 902 B 1 HETATM 54 H H1B NDP . . . H 4 4.576 -43.768 -6.452 1 148.28 ? H1B NDP 902 B 1 HETATM 55 H H8A NDP . . . H 4 7.594 -41.969 -4.934 1 122.77 ? H8A NDP 902 B 1 HETATM 56 H H61A NDP . . . H 4 10.832 -43.358 -8.362 1 117.84 ? H61A NDP 902 B 1 HETATM 57 H H2A NDP . . . H 4 6.629 -45.897 -9.938 1 135.77 ? H2A NDP 902 B 1 HETATM 58 H H51N NDP . . . H 4 3.846 -35.949 -0.576 1 107.95 ? H51N NDP 902 B 1 HETATM 59 H H52N NDP . . . H 4 3.657 -35.494 -2.29 1 107.95 ? H52N NDP 902 B 1 HETATM 60 H H4D NDP . . . H 4 4.507 -33.458 -0.237 1 100.72 ? H4D NDP 902 B 1 HETATM 61 H H3D NDP . . . H 4 2.034 -34.697 0.054 1 87.54 ? H3D NDP 902 B 1 HETATM 62 H HO3N NDP . . . H 4 1.711 -32.846 1.437 0 73.24 ? HO3N NDP 902 B 1 HETATM 63 H H2D NDP . . . H 4 1.075 -33.774 -1.888 1 87.05 ? H2D NDP 902 B 1 HETATM 64 H HO2N NDP . . . H 4 -0.016 -31.791 -1.431 0 77.1 ? HO2N NDP 902 B 1 HETATM 65 H H1D NDP . . . H 4 2.782 -31.27 -1.376 1 89.32 ? H1D NDP 902 B 1 HETATM 66 H H2N NDP . . . H 4 4.066 -30.938 -3.858 1 91.06 ? H2N NDP 902 B 1 HETATM 67 H H71N NDP . . . H 4 3.277 -27.176 -4.513 1 91.13 ? H71N NDP 902 B 1 HETATM 68 H H41N NDP . . . H 4 1.053 -30.456 -6.703 1 88.18 ? H41N NDP 902 B 1 HETATM 69 H H42N NDP . . . H 4 2.174 -31.838 -6.66 1 88.18 ? H42N NDP 902 B 1 HETATM 70 H H5N NDP . . . H 4 -0.21 -32.324 -5.613 1 86.83 ? H5N NDP 902 B 1 HETATM 71 H H6N NDP . . . H 4 0.08 -32.264 -3.226 1 85.33 ? H6N NDP 902 B 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 253 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 71 #